Slide 1 By Fakhruddin Mahmood Anlei Rao Slide 2 Outline Introduction Channel Polarization  Channel Combining  Channel Splitting Polar Codes  Polar coding  Successive…

HMM for multiple sequences Pair HMM HMM for pairwise sequence alignment, which incorporates affine gap scores. “Hidden” States Match (M) Insertion in x (X) insertion…

Ch 5. Profile HMMs for sequence families Biological sequence analysis: Probabilistic models of proteins and nucleic acids Richard Durbin Sean R. Eddy Anders Krogh Graeme…

Generalized Hidden Markov Models for Eukaryotic Gene Prediction Ela Pertea Assistant Research Scientist CBCB A hidden Markov model (HMM) is a statistical model in which the…

HMM for multiple sequences Pair HMM HMM for pairwise sequence alignment, which incorporates affine gap scores. “Hidden” States Match (M) Insertion in x (X) insertion…

Generalized Hidden Markov Models CBB 231 / COMPSCI 261 for Eukaryotic gene prediction W.H. Majoros ATG TGA coding segment complete mRNA ATG GT AG GT AG . . . . . . . . .…

Generalized Hidden Markov Models CBB 231 / COMPSCI 261 for Eukaryotic gene prediction W.H. Majoros ATG TGA coding segment complete mRNA ATG GT AG GT AG . . . . . . . . .…