Documents HMM for multiple sequences. Pair HMM HMM for pairwise sequence alignment, which incorporates affine....

HMM for multiple sequences Pair HMM HMM for pairwise sequence alignment, which incorporates affine gap scores. “Hidden” States Match (M) Insertion in x (X) insertion…

Documents Ch 5. Profile HMMs for sequence families

Ch 5. Profile HMMs for sequence families Biological sequence analysis: Probabilistic models of proteins and nucleic acids Richard Durbin Sean R. Eddy Anders Krogh Graeme…

Documents HMM for multiple sequences

HMM for multiple sequences Pair HMM HMM for pairwise sequence alignment, which incorporates affine gap scores. “Hidden” States Match (M) Insertion in x (X) insertion…