Slide 11 Fast Parallel and Serial Approximate String Matching Journal of Algorithms, Vol.10 (1989), pp.157-169. G. Landau and U. Vishkin Advisor: Prof. R. C. T. Lee Speaker:…
Slide 11 String Matching with k Mismatches by Using Kangaroo Method Efficient string with k mismatches, Landau, G.M., and Vishkin, U., Theoret. Comput Sci 43, 1986, pp. 239-249…
Slide 11 Approximate String Matching Using Compressed Suffix Arrays Trinh N. D. Huynh, W. K. Hon, T. W. Lam and W. K. Sung, Theoretical Computer Science, Vol. 352, 2006,…
Slide 11 Faster algorithms for string matching with k mismatches Adviser : R. C. T. Lee Speaker: C. C. Yen Journal of Algorithms, Volume 50, Issue 2, February 2004, Pages…
Slide 1The beauty of prime numbers vs the beauty of the random Ely Porat Bar-Ilan University Israel Slide 2 Outline Applications Prime Numbers Group Testing De-randomized…
1. 1Tries Standard Tries Compressed Tries Suffix Tries 2. 2Text Processing We have seen that preprocessing the patternspeeds up pattern matching queries After…
Slide 1 Compressed Suffix Arrays based on Run-Length Encoding Veli Mäkinen Bielefeld University Gonzalo Navarro University of Chile BWTRLFID Slide 2 20.6.2005 Compressed…
Gena Tang Pushkar Pande Tianjun Ye Xing Liu Racchit Thapliyal Robert Arthur Kevin Lee Biology background Algorithms De novo - Overlap-Layout-Consensus - De Bruijn graphs…