240-301, Computer Engineering Lab III (Software) Semester 1, 2006-2007 Pattern Matching Dr. Andrew Davison WiG Lab (teachers room), CoE [email protected] T: P: a…

1. 3 -1Chapter 3String Matching 2. String Matching Problem Given a text string T of length n and a patternstring P of length m, the exact string matchingproblem is to…

1. 1Tries Standard Tries Compressed Tries Suffix Tries 2. 2Text Processing We have seen that preprocessing the patternspeeds up pattern matching queries After…

What about the trees of the Mississippi? Suffix Trees explained in an algorithm for indexing large biological sequences Jacob Kleerekoper & Marjolijn Elsinga Overview…

Slide 1. Computational Genomics Lecture #2 This class has been edited from Nir Friedman’s lecture which is available at www.cs.huji.ac.il/~nir. Changes made by Dan Geiger,…

Slide 1 What about the trees of the Mississippi? Suffix Trees explained in an algorithm for indexing large biological sequences Jacob Kleerekoper & Marjolijn Elsinga…

Slide 1 CSE182-L10 LW statistics/Assembly Slide 2 Whole Genome Shotgun Break up the entire genome into pieces Sequence ends, and assemble using a computer LW statistics &…

Slide 1 Database Index to Large Biological Sequences Ela Hunt, Malcolm P. Atkinson, and Robert W. Irving Proceedings of the 27th VLDB Conference,2001 Presented by Raghav…

Computational Genomics Lecture #2 This class has been edited from Nir Friedman’s lecture which is available at www.cs.huji.ac.il/~nir. Changes made by Dan Geiger, then…

Computational Genomics Lecture #2 This class has been edited from Nir Friedman’s lecture which is available at www.cs.huji.ac.il/~nir. Changes made by Dan Geiger, then…