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Technology Comparative data in VectorBase

1. VectorBase http://www.vectorbase.orgComparative data in VectorBaseNovember 2008 2. VectorBasehttp://www.vectorbase.org Comparative data in VectorBase • DNA/DNA comparison–…

Technology VectorBase Comparative data

1. Comparative data in VectorBaseComparative data in VectorBaseKaryn MégyNovember 2008 2008-11 Karyn Mégy 2. Comparative data in VectorBase • DNA/DNA comparisons– Pairwise…

Documents CS273a Lecture 14, Fall 08, Batzoglou CS273a Lecture 14, Fall 2008 Finding Conserved Elements (1)...

Slide 1 CS273a Lecture 14, Fall 08, Batzoglou CS273a Lecture 14, Fall 2008 Finding Conserved Elements (1) Binomial method  25-bp window in the human genome  Binomial…

Documents Evolution at the DNA level …ACGGTGCAGTTACCA… …AC----CAGTCCACCA… Mutation SEQUENCE EDITS...

Slide 1 Evolution at the DNA level …ACGGTGCAGTTACCA… …AC----CAGTCCACCA… Mutation SEQUENCE EDITS REARRANGEMENTS Deletion Inversion Translocation Duplication Slide…

Documents CS273a Lecture 8, Win07, Batzoglou Evolution at the DNA level …ACGGTGCAGTTACCA…...

Slide 1 CS273a Lecture 8, Win07, Batzoglou Evolution at the DNA level …ACGGTGCAGTTACCA… …AC----CAGTCCACCA… Mutation SEQUENCE EDITS REARRANGEMENTS Deletion Inversion…

Documents CS273a Lecture 11, Aut 08, Batzoglou Multiple Sequence Alignment.

Slide 1 CS273a Lecture 11, Aut 08, Batzoglou Multiple Sequence Alignment Slide 2 CS273a Lecture 11, Aut 08, Batzoglou CS273a Lecture 11, Fall 2008 Index-based local alignment…

Documents Building synteny maps Recommended local aligners BLASTZ Most accurate, especially for genes Chains...

Slide 1 Building synteny maps Recommended local aligners BLASTZ  Most accurate, especially for genes  Chains local alignments WU-BLAST  Good tradeoff of efficiency/sensitivity…

Documents Short Primer on Comparative Genomics Today: Special guest lecture 12pm, Alway M108 Comparative...

Slide 1 Short Primer on Comparative Genomics Today: Special guest lecture 12pm, Alway M108 Comparative genomics of animals and plants Adam Siepel Assistant Professor of Biological…

Documents Chapter Two Chromsome Structure & Function 1.Ploidy levels and the cell cycle The chromosome set is....

Slide 1 Chapter Two Chromsome Structure & Function 1.Ploidy levels and the cell cycle The chromosome set is the number of different chromosomes in a nucleated cells and…

Documents Transient Protein States in Designing Inhibitors of the MDM2-p53 Interaction Michal Bista, Siglinde....

Transient Protein States in Designing Inhibitors of the MDM2-p53 Interaction  Michal Bista, Siglinde Wolf, Kareem Khoury, Kaja Kowalska, Yijun Huang, Ewa Wrona, Marcelino…