Figures and Table for Supplemental material Kemin Zhou Nov 20, 2011
Figures and Table for Supplemental material
Kemin Zhou
Nov 20, 2011
Transcription overlap
Number of genes per congregation
Genome Agabi2 Aspca3 Spoth2 Lacbi2 Aspac1
%Multi genes 13.5 38.1 63.0 44.5 63.9
%Genes in Cong. 25.4 63.5 87.4 71.8 90.9
Cou
nt
Fig S1
Fig S2
Relative Expression Level of Minor Isoforms
Co
un
t
Agabi2
0.0 0.4 0.8
050
015
00
Aspca3
0.0 0.4 0.8
020
0060
00
Spoth2
0.0 0.4 0.8
020
0060
00
Lacbi2: Sanger+454
0.0 0.4 0.8
020
040
060
0 Lacbi2
0.0 0.4 0.8
010
000
3000
0
Aspac1
0.0 0.4 0.8
020
000
4000
0
100 200 300 400
0.2
50
.30
0.3
50
.40
0.4
50
.50
SO
M (
std
/me
an
)
Average EST Length (nt)
81.08797.2162.0xxy
Agabi2Aspca3
Aspac1
Spoth2
Lacbi2
Fig S3
Agabi2 N
AG
Fig S4
NA
G
Aspca3
Fig S5
NA
GN
AG
Lacbi2
Fig S6
NA
GN
AG
Spoth2
Fig S7
NA
GN
AG
Aspac1
Fig S8
NA
GN
AG
0.0
0.1
0.2
0.3
0.4
0.5
0.6
0.7
0.8
AD AACE
CE_AD
CE_AA
CE_ADAA IR
ADAA
CEorAAen
dM
E
Other
Agabi2
Aspca3
Spoth2
Lacbi2
Aspac1
AS Category
Fra
ctio
n of
Tot
al
Fig S9
0.00
0.01
0.02
0.03
0.04
CE
CE_AD
CE_AA
CE_ADAA
CEorAAen
d ME
Other
A
B
E
D
C
Fig S10
Intron Length (nt)
Fre
qu
en
cy
Intron Length (nt)
Major: Expression Level > median of complete
models Major isoform of AS
All: Intron from partial + complete models
0.26
0.28
0.3
0.32
0.34
0.36
0.38a
ll
ma
j
ma
jS
ma
jL all
ma
j
ma
jS
ma
jL all
ma
j
ma
jS
ma
jL all
ma
j
ma
jS
ma
jL all
ma
j
ma
jS
ma
jL
Agabi2 Aspca3 Lacbi2 Spoth2 Aspac1
3n 3n+1 3n+22.
6E-0
9
0.02
163
0.95
605
0.41
517
5.1E
-05
0.11
912
0.32
093
0.03
850
0.00
014
6.6E
-06
0.68
033
0.00
084
0.02
261
0.53
449
0.05
320
0.07
668
0.11
337
0.77
613
0.01
756
0.02
417
Fig S11
Fra
ctio
n