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Documents Why Align Sequences? DNA sequences (4 letters in alphabet) – GTAAACTGGTACT… Amino acid (protein)...

Slide 1Why Align Sequences? DNA sequences (4 letters in alphabet) – GTAAACTGGTACT… Amino acid (protein) sequences (20 letters) – SSHLDKLMNEFF… Align them so we can…

Documents The Effectiveness Study of Music Information Retrieval Arbee L.P. Chen National Tsing Hua University...

Slide 1 The Effectiveness Study of Music Information Retrieval Arbee L.P. Chen National Tsing Hua University 2002 ACM International CIKM Conference Slide 2 Outline Motivation…

Documents Tools and Softwares Group 13 Shashi Ranjan Murali Sivaramakrishnan Ognjen Perisic.

Slide 1 Tools and Softwares Group 13 Shashi Ranjan Murali Sivaramakrishnan Ognjen Perisic Slide 2 Introduction Importance of aligning two sequences –Identify the structure…

Documents Exploration Session Week 8: Computational Biology Melissa Winstanley:...

Slide 1 Exploration Session Week 8: Computational Biology Melissa Winstanley: [email protected]@cs.washington.edu (based on slides by Martin Tompa, Luca Cardelli)…

Documents 8/30/2015 5:26 PM Homology modeling Dinesh Gupta ICGEB, New Delhi.

Slide 1 8/30/2015 5:26 PM Homology modeling Dinesh Gupta ICGEB, New Delhi Slide 2 8/30/2015 5:26 PM Protein structure prediction Methods: –Homology (comparative) modelling…

Documents Searching Similar Segments over Textual Event Sequences

Searching Similar Segments over Textual Event Sequences Searching Similar Segments over Textual Event Sequences Liang Tang*, Tao Li*, Shu-Ching Chen* and Shunzhi Zhu+ *Florida…

Documents 1 Data structure:Lookup Table Application:BLAST. 2 The Look-up Table Data Structure A k-mer is a...

* Data structure: Lookup Table Application: BLAST * The Look-up Table Data Structure A k-mer is a string of length k. A lookup table is a table of size |Σ|k that stores…

Documents BNFO 240

BNFO 240 Usman Roshan Last time Traceback for alignment How to select the gap penalties? Benchmark alignments Structural superimposition BAliBASE Database searching Suppose…

Documents Http://creativecommons.org/licenses/by-sa/2.0/. BNFO 602, Lecture 2 Usman Roshan Some of the slides....

http://creativecommons.org/licenses/by-sa/2.0/ BNFO 602, Lecture 2 Usman Roshan Some of the slides are based upon material by David Wishart of University of Alberta and Ron…