Slide 1Why Align Sequences? DNA sequences (4 letters in alphabet) – GTAAACTGGTACT… Amino acid (protein) sequences (20 letters) – SSHLDKLMNEFF… Align them so we can…
Slide 1 The Effectiveness Study of Music Information Retrieval Arbee L.P. Chen National Tsing Hua University 2002 ACM International CIKM Conference Slide 2 Outline Motivation…
Slide 1 Tools and Softwares Group 13 Shashi Ranjan Murali Sivaramakrishnan Ognjen Perisic Slide 2 Introduction Importance of aligning two sequences –Identify the structure…
Searching Similar Segments over Textual Event Sequences Searching Similar Segments over Textual Event Sequences Liang Tang*, Tao Li*, Shu-Ching Chen* and Shunzhi Zhu+ *Florida…
* Data structure: Lookup Table Application: BLAST * The Look-up Table Data Structure A k-mer is a string of length k. A lookup table is a table of size |Σ|k that stores…
BNFO 240 Usman Roshan Last time Traceback for alignment How to select the gap penalties? Benchmark alignments Structural superimposition BAliBASE Database searching Suppose…
http://creativecommons.org/licenses/by-sa/2.0/ BNFO 602, Lecture 2 Usman Roshan Some of the slides are based upon material by David Wishart of University of Alberta and Ron…