Documents Fa05CSE 182 CSE182-L5: Scoring matrices Dictionary Matching.

Slide 1 Slide 2 Fa05CSE 182 CSE182-L5: Scoring matrices Dictionary Matching Slide 3 Fa05CSE 182 Scoring DNA DNA has structure. Slide 4 Fa05CSE 182 DNA scoring matrices So…

Documents CSE182-L5: Scoring matrices Dictionary Matching

CSE182-L5: Scoring matrices Dictionary Matching Scoring DNA DNA has structure. DNA scoring matrices So far, we considered a simple match/mismatch criterion. The nucleotides…

Documents CSE182-L5: Scoring matrices Dictionary Matching

CSE182-L5: Scoring matrices Dictionary Matching Silly Quiz PAM 1 distance Two sequences are 1 PAM apart if they differ in 1 % of the residues. PAM1(a,b) = Pr[residue a substitutes…