INTRODUCTION TO COMPUTATIONAL MOLECULAR BIOLOGY JOAO SETUBAL and JOAO MEIDANIS University of Campinas, Brazil i i \r u INFORMATIK N n PWS PUBLISHING COMPANY I(T)P An International…

INTRODUCTION TO COMPUTATIONAL MOLECULAR BIOLOGY JOAO SETUBAL and JOAO MEIDANIS University of Campinas, Brazil i i \r u INFORMATIK N n PWS PUBLISHING COMPANY I(T)P An International…

1. Sucheta Tripathy, 16th November 2012 2.  A protein sequence from species A◦ What is the nearest species this protein is similarto?◦ Where is it originated from?◦…

1. Benjamin GoodBenjamin Good March 17, 2008March 17, 2008 2. The Genetic Code • Sequence constructed from 4 “letters” known as nucleotides…

Bioinformatics I Sequence Analysis and Phylogenetics Winter Semester 2013/2014 by Sepp Hochreiter Institute of Bioinformatics, Johannes Kepler University Linz Lecture Notes…

Slide 1 Hidden Markov Models in Bioinformatics Applications CSC391/691 Bioinformatics Spring 2004 Fetrow/Burg/Miller (Slides by J. Burg) Slide 2 How Markov Models Work, In…

Slide 1 Bioinformatics Types of databases. Principles of organizations and functioning. Sequence formats. Conversion of one sequence format to another. Database search. FASTA,…

Slide 1 Alignment methods and database searching April 14, 2005 Quiz#1 today Learning objectives- Finish Dotter Program analysis. Understand how to use the program to assess…

Slide 1 Slide 2 Fa05CSE 182 CSE182-L5: Scoring matrices Dictionary Matching Slide 3 Fa05CSE 182 Scoring DNA DNA has structure. Slide 4 Fa05CSE 182 DNA scoring matrices So…

Molecular evolution, cont. Comparing estimation methods. Application to human and mouse sequences Lecture 16, Statistics 246 March 16, 2004 The resolvent method Müller and…