Slide 1 High Throughput Computational Sequence Analysis Rob Edwards [email protected] Argonne National Laboratory San Diego State University Slide 2 First bacterial…

Slide 1 CS273a Lecture 5, Win07, Batzoglou Quality of assemblies—mouse N50 contig length Terminology: N50 contig length If we sort contigs from largest to smallest, and…

Slide 1 High performance computational analysis of DNA sequences from different environments Rob Edwards Computer Science Biology edwards.sdsu.eduwww.theseed.org Slide 2…

Slide 1 Annotating Metagenomes Using the NMPDR Rob Edwards Department of Computer Sciences, San Diego State University Mathematics and Computer Sciences Division, Argonne…

Slide 1 CS262 Lecture 11, Win06, Batzoglou Some new sequencing technologies Slide 2 CS262 Lecture 11, Win06, Batzoglou Molecular Inversion Probes Slide 3 CS262 Lecture 11,…

Slide 1 How We Annotated Genomes for Free: Fast and Accurate Functional Analysis Using Subsystems Technology Rob Edwards Depts of Computer Science And Biology, San Diego…

Slide 1 Annotating Metagenomes Using the SEED Rob Edwards Department of Computer Sciences, San Diego State University Mathematics and Computer Sciences Division, Argonne…

Standards in Genomic Sciences (2012) 6:421-433 DOI:10.4056/sigs.2945050 The Genomic Standards Consortium VIROME: a standard operating procedure for analysis of viral metagenome…

Slide 1 Environmental Genome Shotgun Sequencing of the Sargasso Sea J. Craig Venter et al. Presented by: Hormuzdiyar Dasenbrock and Ryan Wong Slide 2 Environmental Genome…

Slide 1 Sequencing All of Microbial Life: Challenges and Opportunities Rob Edwards Argonne National Laboratory San Diego State University Slide 2 First bacterial genome 100…