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Oxidized human neuroglobin acts as a heterotrimeric
Galpha protein guanine nucleotide dissociation inhibitor
Keisuke Wakasugi*†‡, Tomomi Nakano†, and Isao Morishima*‡
*Department of Molecular Engineering, Graduate School of Engineering, Kyoto University,
Kyoto 606-8501, Japan; †Precursory Research for Embryonic Science and Technology (PRESTO),
Japan Science and Technology Corporation (JST).
‡To whom correspondence should be addressed. e-mail: [email protected]
u.ac.jp
Copyright 2003 by The American Society for Biochemistry and Molecular Biology, Inc.
JBC Papers in Press. Published on July 14, 2003 as Manuscript M305519200 by guest on M
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RUNNING TITLE
Oxidized human Ngb as a GDI
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ABSTRACT
Neuroglobin (Ngb) is a newly discovered vertebrate heme protein that is expressed in the
brain and can reversibly bind oxygen. It has been reported that Ngb expression levels increase in
response to oxygen deprivation, and that it protects neurons from hypoxia in vitro and in vivo.
However, the mechanism of this neuroprotection remains unclear. In the present study, we tried to
clarify the neuroprotective role of Ngb under oxidative stress in vitro. By surface plasmon
resonance, we found that ferric Ngb, which is generated spontaneously as a result of the rapid
autoxidation, binds exclusively to the GDP-bound form of the α subunit of heterotrimeric G
protein (Gα�). In GDP dissociation assays or GTPγS binding assays, ferric Ngb behaved as a
guanine nucleotide dissociation inhibitor (GDI), inhibiting the rate of exchange of GDP for GTP.
The interaction of GDP-bound Gαi with ferric Ngb will liberate Gβγ, leading to protection
against neuronal death. In contrast, ferrous ligand-bound Ngb under normoxia did not have GDI
activities. Taken together, we propose that human Ngb may be a novel oxidative stress-
responsive sensor for signal transduction in the brain.
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INTRODUCTION
Neuroglobin (Ngb) is a recently discovered globin found in the vertebrate brain that has a
high affinity for oxygen (1-3). Globins are iron porphyrin complex (heme)-containing proteins
that bind reversibly to oxygen and as such, play an important role in respiratory function. They
have been found in many taxa including bacteria, fungi, plants, and animals (4). The two major
globins that have been described in vertebrates are hemoglobin and myoglobin. Hemoglobin (Hb),
which consists of four subunits that cooperatively bind oxygen, is present in red blood cells where
it is responsible for transporting oxygen from the lungs to the tissues (5). Myoglobin (Mb) is a
monomeric intracellular globin that stores oxygen in muscle tissue and facilitates its diffusion
from the periphery of the cell to mitochondria, which use it during oxidative phosphorylation (6).
Although Ngb shares only 21 to 25 % sequence identity with vertebrate Hb and Mb, it conserves
the key amino acid residues that are required for Hb and Mb function (1). Like Hb and Mb, Ngb
can reversibly bind oxygen (1,7,8). The iron atom in the heme prosthetic group of each globin
normally exists in either the ferrous (Fe2+) or ferric (Fe3+) state. In the absence of exogenous
ligands, the ferric and ferrous forms of Ngb are hexacoordinated with the endogenous protein
ligands, distal histidine and proximal histidine (7) (Fig. 1). Oxygen (O2) or carbon monoxide
(CO) can displace the distal histidine of ferrous Ngb to produce ferrous oxygen-bound Ngb
(ferrous-O2 Ngb) or ferrous carbon monoxide-bound Ngb (ferrous-CO Ngb) (7). On the other
hand, Hb and Mb are normally hexacoordinated in the ferric state, with a water molecule
coordinated to iron and pentacoordinated in the ferrous form, leaving the sixth position empty and
available for the binding of exogenous ligands such as O2 and CO.
The mammalian brain accounts for up to 20% of the total oxygen consumption even though
it constitutes only 2% of total body weight, and it is the most sensitive organ to the effects of
tissue hypoxia (9). Ngb is widely expressed in the cerebral cortex, hippocampus (CA1, CA2, CA3,
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and CA4, especially in the pyramidal layer), thalamus, hypothalamus, and cerebellum (1,3,10) of
the rat brain. Recently, it has been suggested that Ngb plays a role in the neuronal response to
hypoxia and ischemia (11,12). Ngb expression was reported to increase in response to neuronal
hypoxia in vitro and focal cerebral ischemia in vivo (11,12). Neuronal survival following hypoxia
was reduced by inhibiting Ngb expression with an antisense oligodeoxynucleotide and was
enhanced by Ngb overexpression, supporting the notion that Ngb protects neurons from hypoxic-
ischemic insults (11). Moreover, Ngb protected the brain from experimental stroke in vivo (12).
A possible mechanism by which Ngb protects these neurons is by functioning as an O2
carrier, facilitating the diffusion of O2 to the mitochondria within cells that are engaging in active
aerobic metabolism, in a manner similar to the way Mb acts in muscle cells. However, Ngb has
been estimated to comprise less than 0.01% of the total protein content in the brain (1). The low
concentration (in the micromolar range) of Ngb in brain tissue perhaps argues against its role in
storing and carrying significant amounts of O2. On the other hand, local concentrations of Ngb
may reach sufficiently high levels to allow it to regulate local oxygen consumption (10,13).
Finally, though debatable, the affinity of Ngb for oxygen may be so high as to prevent its release
under physiological conditions (7,8). Thus, the mechanism by which Ngb affords neuroprotection
under oxidative stress conditions such as ischemia and reperfusion remains unclear.
The objective of this study was to investigate whether Ngb has novel functions that are
related to neuroprotective roles under oxidative stress. Online BLAST searches were performed
via the website of the National Center for Biotechnology Information (NCBI) (Conserved
Domain
Database,http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi;http://www.ncbi.nlm.nih.gov/BL
AST). These analyses revealed that human Ngb has 25-35 % amino acid sequence homology with
regulators of G protein signaling (RGS) and RGS domains of G protein-coupled receptor kinases
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(GRK) (Fig. 1). The protein that most closely resembles Ngb (24 % amino acid identity) is GRK4
(Fig. 1). RGS and GRK proteins are modulators of heterotrimeric G proteins (14-17).
Heterotrimeric G proteins (G proteins) consist of an α subunit (Gα) with GTPase activity and a
βγ dimer (Gβγ), and belong to a family of proteins, whose signal transduction function depends
on the binding of guanine nucleotides (18-23). Ligand- or signal-activated G protein-coupled
receptors (GPCRs) induce GDP release from a Gα subunit, which is followed by the binding of
GTP. Binding of GTP to Gα “turns on” the system and causes conformational changes that result
in dissociation of the GTP-bound Gα from both the receptor and Gβγ. The GTP-bound Gα and
Gβγ can then regulate the activity of different effector molecules, such as adenylyl cyclase,
phospholipase Cβ, and ion channels. Signal transduction is “turned off” by the intrinsic GTPase
activity of the Gα protein, that hydrolyzes the bound GTP to GDP, inducing the reassociation of
GDP-bound Gα with Gβγ. The on/off G protein ratio can be regulated by three groups of protein
modulators: guanine nucleotide exchange factors (GEFs) which stimulate GDP dissociation and
subsequent GTP-binding; guanine nucleotide dissociation inhibitors (GDIs) which inhibit GDP
dissociation; and GTPase-activating proteins (GAPs) which enhance GTP hydrolysis (18-23).
GPCRs play a role as functional analogues of GEFs (18,20,21). GRKs phosphorylate agonist-
activated forms of GPCRs to induce homologous desentsitization of signaling pathways (14,15).
RGS proteins act as GAPs for Gαi or Gαo and play a role in desensitization (16,17).
In the present study, we examined the possibility of interaction of Ngb with Gα by surface
plasmon resonance (SPR) measurements. Ferric Ngb interacted exclusively with Gαi in their
GDP-bound forms. In GDP dissociation assays or GTPγS binding assays, ferric Ngb exhibited
GDI activity, inhibiting the rate of exchange of GDP for GTP by Gαi. Since ferrous ligand-bound
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Ngb under normoxia did not have GDI activities, human Ngb may function as a novel oxidative
stress-responsive sensor for signal transduction in the brain.
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EXPERIMENTAL PROCEDURES
Samples
Rat myristoylated Gα-subunits (Gαi1, Gαi2, Gαi3, and Gαo; Calbiochem, San Diego, CA) and
bovine Gβγ (Calbiochem) were used. [35S]GTPγS (>1000 Ci/mmol), [8-3H]GDP (10-15
Ci/mmol) and [α-32P]GTP (~3000 Ci/mmol) were purchased from Amersham Pharmacia Biotech
(Buckinghamshire, England).
Preparation of proteins
Amplification of human Ngb cDNA was performed by PCR using human universal Quick-clone
cDNA (Clontech, Palo Alto, CA). Human Ngb cDNA was cloned into plasmid PET20b
(Novagen, Madison, WI) and was sequenced using an ABI 3100 Genetic Analyzer (Applied
Biosystems, Foster City, CA). Overexpression of human Ngb was induced in E. coli strain BL 21
(DE 3) (Novagen) by treatment with isopropyl β-D-thiogalactopyranoside for 4 h. Purification of
Ngb without 6xHis-tag was carried out as follows (24): Soluble cell extract was loaded onto a
DEAE sepharose anion-exchange column equilibrated with 20 mM Tris-HCl pH 8.0. Ngb was
eluted from the column with buffer containing 75 mM NaCl and was further purified by passage
through a Sephacryl S-200 HR gel filtration column. Human Ngb mutants, including a COOH-
terminal tag of six histidine residues (6xHis-tag), were purified on nickel affinity columns
(His•Bind® resin; Novagen) from the supernatant of lysed cells using the protocol provided by
Novagen.
Mass spectrometric measurements of purified Ngbs were performed using MALDI-TOF
mass spectrometry (PerSpective Biosystems VoyagerTM DE PRO-SD, Applied Biosystems), and
Edman degradation was carried out on purified Ngbs using a G1005A protein sequencing system
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(Hewlett Packard, Palo Alto, CA) at Takara Biomedicals, Inc. in order to determine their NH2-
terminal sequences.
Ferric Ngbs were incubated with 2 mM dithiothreitol (DTT) for 2 h, and then DTT was
removed by chromatography using a PD-10 column (Amersham Pharmacia Biotech). Ferrous-CO
Ngbs were generated after addition of sodium dithionite and CO gas to the DTT-treated ferric
Ngb followed by gel filtration,.
Site-directed mutagenesis
A QuikChangeTM site-directed mutagenesis system (Stratagene, La Jolla, CA) was used to alter
cysteine residues (amino acid residues 46, 55, and/or 120) in human Ngb. The point mutations
were confirmed by DNA sequencing using BigDye Terminator Cycle Sequencing FS (Applied
Biosystems) and an ABI 3100 Genetic Analyzer (Applied Biosystems).
Surface plasmon resonance (SPR) experiments
SPR measurements were performed on a BIAcore® X Instrument (Biacore, Uppsala, Sweden).
Rat myristoylated Gα-subunit (Gαi, Gαi2, Gαi3, or Gαo) was immobilized on the surface of a
CM5 sensor chip using an amine coupling kit (Biacore) according to the instructions of the
manufacturer. Activation of the carboxymethylated dextran in the CM5 sensor chip was carried
out by mixing equal volumes of 400 mM N-ethyl-N'-(3-dimethylaminopropyl)carbodiimide in
water and 100 mM hydrochloride/N-hydroxysuccinimide in water, and injecting the mixture into
the instrument at 10 µl/min for 7 min. This was followed by the injection of 5 µg/�l of Gα
protein dissolved in 10 mM acetate buffer (pH 4.5) over the activated surface of the sensor chip
for 7 min at a flow-rate of 10 µl/min. The unreacted sites of the sensor chip were masked by the
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injection for 7 min of 1 M ethanolamine, pH 8.5. After immobilization, non-specifically bound
protein was removed by washing with running buffer (10 mM Hepes, 150 mM NaCl, 0.005 %
Tween20, pH 7.4) until the value of the resonance units (RU) became nearly constant.
All binding experiments were performed at 25 °C at a flow rate of 5 µl/min. Ferric or ferrous-
CO Ngb in the running buffer was injected for 5 min, during which association occurred.
Dissociation then took place in the running buffer over the next 10 min. The BIAcore response
was expressed in relative RU i.e., the difference in response between flow cell with immobilized
protein and the control flow channel. 1000 RU corresponded to 1 ng/mm2 of bound ligand. For
binding analyses in the presence of guanine nucleotides, the running buffer containing 5 mM
MgSO4 and either 500 µM GDP, or 500 µM GDP plus 500 µM AlCl3 and 10 mM NaF was
loaded for 60 min to allow binding of guanine nucleotide to immobilized Gα, after which the
samples were injected. After each binding cycle, the sensor chip was regenerated with 5 µl of
0.05 % SDS in the running buffer and was washed with running buffer for 5-10 min prior to the
next injection. Experimental curves (sensorgrams) were analyzed by means of the BIAevaluation
3.1 software package using the model A + B ⇔ AB to estimate the association and dissociation
rate constants ka and kd.
GTPγS binding assays
100 nM Gαi1 or Gαo was incubated for 3 min at 25 °C in buffer A (20 mM Tris-HCl, 100 mM
NaCl, and 10 mM MgSO4 at pH 8.0) with 10 µM GDP in the absence or presence of Ngb (5 µM).
Binding assays were initiated with additions of 50 nM [35S]GTPγS (>1000 Ci/mmol). Aliquots
(10 µl) were withdrawn from the binding mixtures and were passed through nitrocellulose filters
(0.45 µm) (Millipore, Bedford, MA). The filters were then washed three times with 1 ml of ice-
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cold buffer A and were counted in a liquid scintillation counter (LSC-6100; Aloka, Tokyo, Japan).
The apparent rate constant (kapp) values for the binding reactions were calculated by fitting the
data to the following equation: GTPγS binding (%) = 100 % x (1-e-kt).
GDP dissociation assays
Gαi1 complexed with [3H]GDP (0.3 µM) was prepared by incubating 0.3 µM Gαi1 with 2 µM
[3H]GDP in buffer A for 1.5 h at 25 °C. Excess unlabeled GTP or GDP (200 µM) was added to
monitor dissociation of [3H]GDP from Gαi1 in the absence or presence of Ngb (5 µM). Aliquots
were withdrawn at the indicated times and were passed through nitrocellulose filters (0.45 µm)
(Millipore, Bedford, MA). The filters were then washed three times with 1 ml of ice-cold buffer
A and were counted in a liquid scintillation counter (LSC-6100; Aloka). As for preparation of
Gαi1 complexed with [α-32P]GDP (1 µM), 1 µM Gαi1 and 2 µM [α-32P]GTP were incubated in
buffer A for 1.5 h at 25 °C. Experiments using Gαi1 complexed with [α-32P]GDP were also
performed, as described above.
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RESULTS
SPR detection of human ferric Ngb binding to Gα
Proteins that interacted with human Ngb were sought by SPR experimentation. SPR is a
powerful tool for real time measurement of direct protein-protein interactions that do not require
labeling of the proteins. We covalently coupled rat Gαi, which is highly expressed in the brain
(18), to a sensor chip. As positive and negative controls we used Gβγ and Mb, respectively, and
confirmed that Gβγ interacts with GDP-bound Gαi but Mb does not bind to Gαi by SPR
(Supplement). Then we characterized the interaction between Ngb and Gαi by SPR. A
representative sensorgram in Fig. 2A shows that the resonance response reflecting Gαi-ferric Ngb
interaction occurred in an analyte concentration-dependent manner. In the association phase (0 ~
300 s), the intensity of SPR increased, indicating that ferric Ngb bound to Gαi specifically, while
in the dissociation phase (300 ~ 900 s), the intensity of SPR decreased, indicating that ferric Ngb
dissociated from the immobilized Gαi. Binding parameters for the interaction of ferric Ngb with
Gαi were determined to be as follows: association rate constant, ka = 5.0 x 102 M-1s-1;
dissociation rate constant, kd = 3.0 x 10-4 s-1; and equilibrium dissociation constant, Kd = kd/ka =
6.0 x 102 nM. No significant resonance signals were obtained from sensor chip surfaces that did
not have attached ligands (data not shown), indicating an absence of nonspecific interactions
between the sensor chip surfaces and analytes.
Next we investigated the possibility of interaction of ferrous-O2 Ngb with Gαi. Since ferrous-
O2 Ngb is unstable and is converted into ferric Ngb very rapidly due to its autoxidation (7), stable
ferrous-CO Ngb was used for SPR experiments. As shown in Fig. 2B, the binding affinity of
ferrous-CO Ngb to Gαi was significantly low (Kd > 1mM) as compared with that of ferric Ngb.
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Moreover, further SPR measurements clarified that human ferric Ngb binds to Gαi2, Gαi3,
and Gαo (Kd = 5.8 x 102, 5.5 x 102 and 6.1 x 102 nM, respectively), whereas ferrous-CO Ngb
does not bind them (Kd > 1 mM).
Ferric Ngb interacts exclusively with the GDP-bound form of Gα
Next we investigated guanine nucleotide dependence of the binding of Gαi1 to Ngb by SPR
measurements. As shown in Fig. 2C, ferric Ngb bound to Gαi even in the presence of Mg2+ and
GDP. The binding parameters (ka = 1.1 x 103 M-1s-1, kd = 6.8 x 10-4 s-1, Kd = 6.0 x 102 nM) were
almost the same as those seen in the absence of Mg2+ and GDP. Aluminium tetrafluoride (AlF4-),
together with Mg2+, can interact with Gαi1-bound GDP and mimic GTP, and thereby activate
Gαi1 (21,22). In the presence of Mg2+, GDP and AlF4-, ferric Ngb did not bind to the activated
Gαi (Fig. 2C). Therefore, human ferric Ngb clearly interacts exclusively with the inactive (GDP-
bound) form of Gαi1.
Effects of Ngb on GTPγS binding to Gα
Since our SPR data suggested that human ferric Ngb interacts with GDP-bound Gαi1 but not
interact with activated GTP-bound Gαi1, we hypothesized that Ngb may function as a GEF or
GDI for Gαi1. To determine whether ferric Ngb functions as a GEF or a GDI, we performed
GTPγS (a nonhydrolyzable analog of GTP) binding experiments. Increased GTPγS binding to
Gαi1 would imply ferric Ngb is a GEF, whereas decreased binding would imply that ferric Ngb is
a GDI.
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As shown in Fig. 3A, Gαi1 bound GTPγS due to spontaneous guanine nucleotide exchange
(kapp = 0.081 min-1). In the presence of ferric Ngb, the rate of GTPγS binding to Gαi1 was reduced
6.2-fold (kapp= 0.013 min-1) (Fig. 3A), implying that ferric Ngb functions as a GDI for Gαi. On
the other hand, ferrous-CO Ngb had no effect on the GTPγS binding (kapp = 0.078 min-1) (Fig.
3A).
Moreover, ferric Ngb inhibited the rate of GTPγS binding to Gαo by 10-fold, in contrast
ferrous-CO Ngb had no effect (kapp = 0.040, 0.004, and 0.038 min-1 in the absence and presence
of ferric and ferrous-CO Ngb, respectively) (Fig. 3B). These results imply that ferric Ngb is a
GDI for Gαo as well as Gαi.
Ferric Ngb acts as a GDI
We then addressed the mechanism by which human ferric Ngb inhibited GTPγS binding to
Gαi and Gαo. The inhibition of GTPγS binding to Gαi/o by ferric Ngb may reflect a reduction in
the rate of nucleotide exchange. To examine the effects of ferric Ngb on the release of GDP from
Gαi1, we measured the rates of GDP dissociation in the absence or presence of ferric Ngb. In the
presence of an excess amount of unlabeled GTP, [3H]GDP release from [3H]GDP-bound Gαi1
was inhibited by ferric Ngb (Fig. 4A). The inhibition of GDP dissociation by ferric Ngb suggests
that ferric Ngb diminished the rates of spontaneous GTPγS binding to Gαi and Gαo by blocking
the GDP release. In other words, ferric Ngb functions as a GDI for Gαi.
The most representative GDIs for heterotrimeric G proteins share conserved sequence repeats
named the G protein regulatory (GPR) (25) or GoLoco motifs (26). One of the family, Purkinje
cell protein-2 (Pcp2), can modulate GDP binding to Gαo and Gαi (27,28). In the presence of
excess unlabeled GTP, Pcp2 preferentially interacts with the GDP-bound conformation of Gα and
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serves exclusively as a GDI as does human ferric Ngb (28,29). On the other hand, in the presence
of excess unlabeled GDP, Pcp2 was reported to stimulate GDP release from Gαo (27). To further
characterize properties of Ngb as a GDI, we performed GDP dissociation assays in the presence
of excess GDP. As shown in Fig. 4B, ferric Ngb stimulated [3H]GDP release from [3H]GDP-
bound Gαi1 in the presence of an excess amount of unlabeled GDP, suggesting that the
mechanism of ferric Ngb as a GDI is similar to that of Pcp2. Experiments using [α32P]-GDP
instead of [3H]-GDP also supported these results (data not shown).
Functional analyses of Ngb with an intra- or intermolecular disulfide bond
Cysteine (Cys) residues are particularly sensitive to oxidation by almost all forms of reactive
oxygen species during ischemia and reperfusion (30). Under even mild oxidative conditions, Cys
residues are converted to disulfides (31). Human Ngb has three Cys residues at positions 46, 55,
and 120 (Fig. 1). Cys55 and Cys120 are conserved among mammalian Ngbs, whereas Cys46 is
specific for human Ngb. We investigated whether human wild-type Ngb before DTT treatment
forms a disulfide bond. Fig. 5A shows the SDS-polyacrylamide gel electrophoresis (SDS-PAGE)
that was run under nonreducing conditions. The protein treated with DTT migrated slower than
the untreated protein. Since it has been reported that a protein containing an intramolecular
disulfide linkage has a smaller radius of gyration and migrates further down a gel (32), these data
suggest that ferric Ngb forms a disulfide bond between Cys46, Cys55, or Cys120 spontaneously
upon exposure to air.
To investigate the role of a disulfide bond in the functioning of Ngb, Ngb Cys→Ser mutants
[three single mutants (C46S; C55S; C120S), three double mutants (C46S,C55S; C46S,C120S;
C55S,C120S) and a triple mutant (C46S,C55S,C120S)] with C-terminal 6 x His tag were
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prepared. The C120S Ngb mutant formed a disulfide bond as did wild-type Ngb, while the C46S
and C55S mutants did not (data not shown), suggesting that the intramolecular disulfide bond
between Cys46 and Cys55 is present in human wild-type Ngb. As shown in Fig. 5B, we found that
a double mutant (C55S,C120S) forms a dimer. This dimer was converted into a monomer by
incubation with DTT (Fig. 5B), indicating that the intermolecular disulfide bond Cys46-Cys46 was
present in this mutant.
Next we investigated GDI activities of these Ngbs with the intra- or intermolecular disulfide
bond. As shown in Fig. 6A, human wild-type ferric Ngb with the intramolecular disulfide bond
inhibited GDP release as did the DTT-reduced ferric Ngb. Double mutant (C55S,C120S)
homodimer linked by the intermolecular disulfide bond did not inhibit GDP/GTP exchange of
Gαi1, whereas its DTT-reduced monomeric form inhibited GDP/GTP exchange of Gαi1 (Fig. 6A),
implying that formation of the intermolecular Cys46-Cys46 disulfide bond in the double mutant
blocks binding sites with Gαi1. As a control, triple mutant (C46S,C55S,C120S), which can not
form a disulfide bond, acted as a GDI with or without DTT (Fig. 6A). As shown in Fig. 6B, in the
presence of excess unlabeled GDP, only double mutant (C55S,C120S) homodimer could not
stimulate [3H]GDP release from [3H]GDP-bound Gαi1. These data also imply that residues
around Cys46 are important for GDI activities of human ferric Ngb.
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DISCUSSION
During ischemia and reperfusion, overproduction of nitric oxide (NO) occurs due to
induction of expression of NO synthetases (33). Reactive oxygen species, which have been
identified as central mediators in certain signaling events, are also generated (34). Reaction of
ferrous-O2 Mb or Hb with NO and/or reactive oxygen species converts these proteins to their
ferric forms (35-38). Thus, ferrous-O2 Ngb may become ferric Ngb during ischemia and
reperfusion. In fact, Ngb has been reported to have a surprisingly high rate of auto-oxidation (7).
Moreover, a recent histochemical study suggested that Ngb transcript exists in the brain areas
important for adaptive responses to stressful events and that Ngb and NO synthetase are co-
expressed in a number of nuclei (39). Our results showed that ferric Ngb functions as a novel GDI
for Gαi/o in vitro. The interaction of Gαi with ferric Ngb will liberate Gβγ, leading to protection
against neuronal death. Since ferrous ligand-bound Ngb, which is a normal form under normoxia,
does not have GDI activities, Ngb may act as an oxidative stress-responsive sensor for signal
transduction in the brain (Fig. 7).
Structure and function of Ngb - the hypoxia-regulated sensor
In this study, we showed that human Ngb, which contains weak homology to RGS domains,
functions as a novel GDI in vitro. Human ferric Ngb binds exclusively to the GDP-bound form of
Gαi and inhibits GDP/GTP exchange of Gαi. On the other hand, ferrous-CO Ngb did not interact
with Gαi and did not have GDI activities. Therefore, it is theorized that the regulation of
interaction of Ngb with Gαi is dependent on oxidation/reduction state and ligand binding of Ngb.
Nonsymbiotic plant hemoglobins (nsHbs) have some characteristics that are similar to Ngb
including the fact they are both members of a newly discovered class of "hexacoordinated"
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globins and are expressed at low levels (1,40-43). Hypoxia induces the expression of nsHbs as
well as Ngb (44,45). While the three-dimensional structure of Ngb has not as yet been determined,
that of a nsHb (rice Hb1) has been determined (40). In the hexacoordinated structure (Fe3+) of rice
Hb1, electron density of the Phe B10 in the distal pocket is very low because of substantial
disorder, and it has been suggested that the entire CD corner is disordered because of distal His
binding to the heme iron (40). Crystallographic modeling suggests that ligand binding occurs by
an upward and outward movement of the E helix, a concomitant dissociation of the distal
histidine, a possible repacking of the CD corner and folding of the D helix (40).
It is tempting to speculate that Ngb undergoes large tertiary structural changes around the CD
corner and D helix when its ferrous-O2 form is converted into bis-His conformation
(hemichromogen or hemochromogen), as described for rice Hb1 (40). Furthermore, it can be
speculated that the structural change around the CD corner and D helix triggers changes in
affinity for the binding of Gαi if that binding occurs in the CD region and D helix. In fact, in this
study we have demonstrated that Ngb double mutant (C55S,C120S) homodimer linked by the
intermolecular disulfide bond at Cys46-Cys46 can not function as a GDI, whereas its DTT-reduced
monomeric form acts as a GDI, suggesting that the CD corner in which Cys46 exists is important
for protein-protein interaction between ferric Ngb and Gαi1 and is responsible for GDI activities
for Gα.
It should also be noted that a disulfide bond between Cys46 and Cys55 of Ngb is located at the
CD corner and D helix. Therefore, the S-S bond formed during hypoxia may contribute to the
stabilization of structures near the CD corner and D helix of oxidized Ngb, which is the active
form for signal transduction in the brain, since it has been reported that introduction of a disulfide
bond enhances the thermal and conformational stability of proteins (46,47). Because Cys46 is
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present in human Ngb but is not present in other mammalian Ngbs, human Ngb might have
evolved to stabilize the active form during hypoxia.
Novel brain-specific signaling pathway under oxidative stress
It has recently been reported that Gαi and Gαo are direct target proteins of reactive oxygen
species generated during ischemia and reperfusion and that they are activated in the absence of
GPCR-mediated signaling (48,49). Reactive oxygen species modify two cysteine residues of Gαi
and Gαo (49). Modification of Gαi and Gαo accelerates GDP release from Gα and increases the
formation of the GTP-bound form of Gα without receptor activation (48,49).
We have shown here that human ferric Ngb, which may be produced under oxidative stress
conditions such as ischemia and reperfusion, functions as a GDI that keeps Gαi or Gαo in its
inactive state as does Pcp-2 (GPR, GoLoco). The interaction of Gαi/o with ferric Ngb under
oxidative stress is a novel brain-specific signaling pathway (Fig. 7). Since GPR/Gαi/o interaction
prevents Gβγ from returning to Gα and thus leads to enhanced Gβγ-dependent signaling (28,50),
human ferric Ngb would selectively shut off signaling pathways linked to Gα effectors and favor
Gβγ effector pathways. The intracellular signal transduction induced by Gβγ protects the cells
against oxidative stress (51): Gβγ stimulate proliferation via mitogen activated protein kinase
(MAPK) pathways and promote cell survival by the activation of phosphotidylinositol-3-kinase
(PI3K). Taken together, the characteristic of human ferric Ngb as a GDI may play important roles
in neuroprotective function of human Ngb in the brain. Further study will be necessary to
understand the physiological significance of the interaction of Ngb with Gα in the brain.
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FOOTNOTES
This work was supported in part by Grants-in-Aid 13780532 and 15770085 for Young Scientists
(B) (to K. W.), a Grant-in-Aid 12215077 for Scientific Research on Priority Areas (to K. W.) and
a Grant-in-Aid 12002008 for Specially Promoted Research (to I. M.) from the Ministry of
Education, Culture, Sports, Science and Technology of Japan.
‡To whom correspondence should be addressed. e-mail: [email protected]
u.ac.jp
1The abbreviations used are: Ngb, neuroglobin; ferrous-02 Ngb, ferrous oxygen-bound Ngb;
ferrous-CO Ngb, ferrous carbon monoxide-bound Ngb; G protein, guanine nucleotide-binding
protein; GRK, G protein-coupled receptor kinase; RGS, regulator of G protein signaling; GPCR,
G protein-coupled receptor; GEF, guanine nucleotide exchange factor; GDI, guanine nucleotide
dissociation inhibitor; GAP, GTPase activating protein; DTT, dithiothreitol; SDS-PAGE, sodium
dodecyl sulfate-polyacrylamide gel electrophoresis; SPR, surface plasmon resonance; RU,
resonance units; GTPγS, guanosine 5’-O-(3-thio)triphosphate; Pcp2, Purkinje cell protein-2; GPR,
G protein regulatory; GoLoco, Gαi/o-Loco interaction; GAIP, Gα interacting protein.
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FIGURE LEGENDS
FIG. 1. Sequence alignment of human Ngb to RGS domains.
The multiple sequence alignment was performed by Clustal W and manual adjustments. GRK2,
GRK4, GRK5, GRK6, RGS1, RGS4, RGS9 and GAIP share RGS domains. Human myoglobin
(Mb) was used as a representative protein among globin family members. Consensus amino acids
between Ngb and RGS domain are indicated as red letters. Residues highlighted in yellow are
conserved residues that form the hydrophobic core of the RGS domain. Numbers on the left and
right of the sequences correspond to those at the beginning and end of the sequences, respectively.
Gaps in the sequences are indicated by dashes. Boundaries of α helices in human Mb or GAIP,
based on its crystal structure (52,53), are depicted as boxes above or below the sequence,
respectively. The secondary structure prediction for human Ngb obtained with the program PHD
(54) is shown above the sequence (boxes for α-helices and continuous lines for the rest).
Residues in RGS4 and RGS9 that are involved in contacts (< 4.0 �) with Gαi1 and the Gαi/t
chimera, respectively, are blue (55,56). Cysteine residues of Ngb are highlighted in green, and
distal and proximal histidine residues of Ngb are highlighted in purple. The primary sequences
used in the alignment are human myoglobin (Mb, 154 amino acid (aa) protein, accession number
NP_005359), human neuroglobin (Ngb, 151 aa, NP_067080), human GRK2 (689 aa P25098),
human GRK4 (578 aa, P32298), human GRK5 (590 aa, P34947), human GRK6 (576 aa, P43250),
human RGS1 (196 aa, Q08116), human RGS4 (205 aa, P49798), human RGS9 (443 aa,
NP_003826) and human GAIP (217 aa, CAA62919).
FIG. 2. SPR analyses of human Ngb binding to G protein α-subunit Gαi1. A, Concentration
dependence of ferric Ngb on binding affinities with Gαi1. Gαi1 was immobilized to a CM5 sensor
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chip. The immobilization level of Gαi1 was 10000 resonance units (RU). The on and off
processes for ligand binding were recorded on a BIAcoreX. The bars at 0 and 300 sec indicate the
start of injection of ligand (association phase) and the start of injection of buffer alone
(dissociation phase), respectively. Concentrations of Ngb used were 1, 2, 4, 6, 8 and 10 µM. B,
SPR analyses of ferric or ferrous-CO Ngb binding to Gαi1. The concentrations of Ngbs were 4
µM. C, Effects of a guanine nucleotide (GDP, or GDP plus AlF4-) on the interaction between Ngb
and Gαi1. The concentration of Ngb was 3 µM.
FIG. 3. Effects of human Ngb on GTPγS binding to Gαi/o. The binding of GTPγS to 100 nM
Gαi1 (A) and Gαo (B) in the absence (○) or presence of 5 µM ferric (●) or ferrous-CO Ngb (▲)
was initiated by the addition of 50 nM [35S]GTPγS (>1000 Ci/mmol). Gαi1- or Gαo-bound
GTPγS was counted by withdrawing aliquots at the indicated times and passing through
nitrocellulose filters (0.45 µm).
FIG. 4. Effects of Ngb on dissociation of GDP from GDP-bound Gαi1. A, Experiments
performed in the presence of an excess amount of unlabeled GTP. Gαi1 complexed with [3H]GDP
was obtained as described in the “Materials and methods”. An excess of unlabeled GTP (200 µM)
was added to the Gαi1:[3H]GDP complex in the absence or presence of 5 µM Ngb. Aliquots were
withdrawn at 0, 5, and 10 min and passed through nitrocellulose filters (0.45 µm). Each error bar
represents the standard deviation of 3-4 independent experiments. B, Experiments performed in
the presence of an excess amount of unlabeled GDP. Experimental conditions were as in A,
except for the addition of an excess amount of unlabeled GDP (200 µM).
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FIG. 5. SDS-PAGE analyses of human Ngbs under nonreducing conditions. A, analysis of
human wild-type Ngb. Human wild-type Ngb was incubated in the absence or presence of 2 mM
DTT for 2 hours at 25 °C. The samples were analyzed under nonreducing conditions on 12.5 %
SDS-polyacrylamide gels and stained by Coomassie Blue. Molecular size markers are given to
the left (in kilodaltons). B, analysis of human Ngb mutants [triple mutant (C46S,C55S,C120S)
and double mutant (C55S,C120S)] with C-terminal 6xHis tag under nonreducing conditions.
Experimental conditions are as in A.
FIG. 6. Effects of disulfide bond formation on GDI activities of ferric Ngbs. A, Experiments
performed in the presence of an excess amount of unlabeled GTP. Human wild-type Ngb and
Ngb mutants [triple mutant (C46S,C55S,C120S) and double mutant (C55S,C120S) with C-
terminal 6xHis tag] were used. Percentages of [3H]GDP-bound Gαi1 at 5 min are shown. The
concentrations of Ngbs were 5 µM. Experimental conditions are as in Fig. 4A. B, Experiments
performed in the presence of an excess amount of unlabeled GDP. Experimental conditions are as
in Fig. 4B.
FIG. 7. Human Ngb as an oxidative-stress responsive sensor for signal transduction in the
brain.
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DE
F
FG
H
α3α4
α5
α6α7
α8
Mb 42 EKFDKFK-HLKSEDEMK--ASEDLKKHGATVLTALGGILKKKGH---HEAEIK 88
Ngb 40 PLFQYNCRQFSSPEDCL--SSPEFLDHIRKVMLVIDAAVTNVEDLSSLEEYLA 90
GRK2 62 KLGYLLFRDFCLNHLEEARPLVEFYEEIKKYEKLETEEERVARSREIFDSYIM 114
GRK4 61 PIGRRLFRQFCDTKPTLK-RHIEFLDAVAEYEVADD-EDRSDCGLSILDRFFN 111
GRK5 61 PIGRLLFRQFCETRPGLE-CYIQFLDSVAEYEVTPD-EKLGEKGKEIMTKYLT 111
GRK6 61 PIGRLLFREFCATRPELS-RCVAFLDGVAEYEVTPD-DKRKACGRQLTQNFLS 111
RGS1 80 QTGQNVFGSFLKSEFSE--ENIEFWLACEDYKKTES-DLLPCKAEEIYKAFVH 129
RGS4 70 ECGLAAFKAFLKSEYSE--ENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFIS 120
RGS9 81 PKGRQSFQYFLKKEFSG--ENLGFWEACEDLKYGDQ-SKVKEKAEEIYKLFLA 130
GAIP 98 PAGRSVFRAFLRTEYSE--ENMLFWLACEELKAEANQHVVDEKARLIYEDYVS 148
Mb 89 PLAQSHATKHKIPVKYLEFISEAIIQVLQS-KHPGDFGADAQGAMNKALELFRK 141
Ngb 91 SLGRKHRAVG-VKLSSFSTVGESLLYMLEK-CLGPAFTPATRAAWSQLYGAVVQ 142
GRK2 115 KELLAC-SHP-F---SKSATEHVQGHLGKKQVPPDLFQPYIEEICQNLRGDVFQ 163
GRK4 112 DKLAAP-LPE-I---PPDVVTECRLGLKEENPSKKAFEECTRVAHNYLRGEPFE 160
GRK5 112 PKSPVF-IAQ-V---GQDLVSQTEEKLLQK-PCKELFSACAQSVHEYLRGEPFH 159
GRK6 112 HTGPDL-IPE-V---PRQLVTNCTQRLEQG-PCKDLFQELTRLTHEYLSVAPFA 159
RGS1 130 SDAAK--QIN-I---DFRTRESTAKKIKA--PTPTCFDEAQKVIYTLMEKDSYP 175
RGS4 121 VQATK--EVN-L---DSCTREETSRNMLE--PTITCFDEAQKKIFNLMEKDSYR 166
RGS9 131 PGARR--WIN-I---DGKTMDITVKGLKH--PHRYVLDAAQTHIYMLMKKDSYA 176
GAIP 149 ILSPK--EVS-L---DSRVREGINKKMQE--PSAHTFDDAQLQIYTLMHRDSYP 194
Fig
. 1
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0
50
100
150
200
250
300
350
400
0 200 400 600 800
SP
R S
igna
l (R
U)
Time (sec)
10
8
6
4
2
1
Fig. 2A
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0
50
100
150
200
0 200 400 600 800
SP
R S
igna
l (R
U)
Time (sec)
Ferrous-CO Ngb
Ferric Ngb
Fig. 2B
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-10
0
10
20
30
40
50
60
0 200 400 600 800
SP
R S
igna
l (R
U)
Time (sec)
+ GDP
+ GDP + AlF4-
Fig. 2C
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0
20
40
60
80
100
0 5 10 15 20
GT
P
S b
indi
ng (
% m
axim
um)
Time (min)
γ
Fig. 3A
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0
10
20
30
40
50
60
70
0 5 10 15 20
GT
P
S b
indi
ng (
% m
axim
um)
Time (min)
γ
Fig. 3B
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0
20
40
60
80
100
120G
DP
bou
nd (
% m
axim
um)
Gα i1 +NgbGα i1
0 5 10 0 5 10
Fig. 4A
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0
20
40
60
80
100
120G
DP
bou
nd (
% m
axim
um)
Gα i1 +NgbGα i1
0 5 10 0 5 10
Fig. 4B
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DTT -+ +
47.0
38.0
29.5
21.0
9.8
Fig. 5A
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DTT - + +-
47.0
38.0
29.5
21.0
Triple mutant(C46S,C55S,C120S)
Double mutant (C55S,C120S)
Fig. 5B
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0
20
40
60
80
100
120G
DP
bou
nd (
% m
axim
um)
Triplemutant+ DTT
Doublemutant+ DTT
Triplemutant- DTT
Doublemutant- DTT
WT- DTT
WT+ DTT
Fig. 6A
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0
20
40
60
80
100
120G
DP
bou
nd (
% m
axim
um)
Triplemutant+ DTT
Doublemutant+ DTT
Triplemutant- DTT
Doublemutant- DTT
WT- DTT
WT+ DTT
Fig. 6B
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GDP-boundGα
NormoxiaHypoxia
(Ischemia, Reperfusion)
oxidative stressNo signal
GTP-boundGα GβγGDP-bound
Gα
Gβγ
GTPGDP
inactive active
Effectors Effectors
GPCR
Ferrous-02 Ngb
Ferric Ngb
Gβγ
inactive active
Effectors
Cell survival
?
Ferric Ngb
Fig. 7
Pi
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FIGURE LEGEND
Supplement. SPR analyses of Mb or Gββββγγγγ binding to G protein αααα-subunit Gααααi1. Gαi1
was immobilized to a CM5 sensor chip. The on and off processes for ligand binding
were recorded on a BIAcoreX. The bars at 0 and 300 sec indicate the start of injection
of ligand (association phase) and the start of injection of buffer alone (dissociation
phase), respectively. As a negative control, human Mb (10 µM) was used. Human Mb
did not bind to Gαi1 (Kd > 1 mM). As a positive control, concentration dependence of
Gβγ on binding affinities with Gαi1 was investigated. Concentrations of Gβγ used were
3, 9 and 25 nM. The running buffer containing 5 mM MgSO4 and 500 µM GDP was
used. Equilibrium dissociation constant for the interaction of Gβγ with Gαi1 Kd = 6.7
nM.
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0
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100
150
200
250
0 200 400 600 800
SP
R S
igna
l (R
U)
Time (sec)
Gβγ 25 nM
Gβγ 9 nM
Gβγ 3 nM
Mb 10 Mµ
Supplement
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Keisuke Wakasugi, Tomomi Nakano and Isao Morishimanucleotide dissociation inhibitor
Oxidized human neuroglobin acts as a heterotrimeric Galpha protein guanine
published online July 14, 2003J. Biol. Chem.
10.1074/jbc.M305519200Access the most updated version of this article at doi:
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