1. NON-INTENSIVE BIOLOGY:OPPORTUNITIES ANDCHALLENGES OF NEXT-GENSEQUENCINGC. Titus BrownAssistant ProfessorMMG / CSE 2. Lansing, Michigan -> Davis, California 3. We practice…

1. STREAMING VARIANTCALLING?C. Titus BrownMichigan State UniversitySep 2014, NCI EDRN / Bethesda, MD 2. Mapping: locate reads in referencehttp://en.wikipedia.org/wiki/File:Mapping_Reads.png…

1.Streaming approaches to sequencedata compression(via normalization and error correction) C. Titus Brown Asst Prof, CSE andMicrobiologyMichigan State University [email protected].…

1.  Genetic variations in plants thathave been produced by plant tissueculture and can be detected asgenetic or phenotypic traits. 2. Basic Features of SomaclonalVariations…

1. Variant calling while accounting for alternate haplotypes Aaron Quinlan University of Virginia ! quinlanlab.org Genome Reference Consortium Workshop Sept 21, 2014 2. Motivation:…

1. Ion TorrentThe Chip is the Machine™Ion TorrentThe Chip is the Machinescalabilitysimplicityspeed 2. Scalabilitymassively scalable semiconductor technologySimplicitynatural…

PHYTOPHTHORA GENOME SEQUENCING: A case study Santhosh J. Eapen [email protected] Status of whole genome sequencing of Phytophthora spp. * * Organism Status Release date…

CloudBurst, Crossbow & Contrail: Scaling Up Bioinformatics with Cloud Computing Michael Schatz March 15, 2010 CHI XGen Congress The Evolution of DNA Sequencing Year Genome…

1.The ABRF Next Generation Sequencing Study: Multi-Platform and Cross-Methodological Reproducibility of RNA and DNA Profiling Genome in a Bottle Consortium Workshop January…