1.Biological databases Challenges in organization and usability Lars Juhl Jensen 2. Ph.D. 3. postdoc 4. staff scientist 5. group leader 6. cofounder 7. challenges 8. buzzword…

1.>10 km 2. too much to read 3. exponential growth 4. ~40 seconds per paper 5. computer 6. as smart as a dog 7. teach it specific tricks 8. information retrieval 9. named…

1.Immunohistochemistry: techniques and considerations 2. Immunohistochemistry • What is it? • What can it tell you? • What are its limitations? • How is it done?…

1. Text mining for organismand environment namesLars Juhl Jensen 2. who am I? 3. sequence analysis 4. protein networks 5. string-db.org 6. chemical networks 7. stitch-db.org…

1. STRINGLarge-scale data and text miningLars Juhl Jensen 2. association networks 3. guilt by association 4. biological systems 5. protein networks 6. STRING 7. 1100+ genomes…

1. The pragmatic text minerIt’s just another type of poorly standardizeddataLars Juhl Jensen 2. why text mining? 3. data mining 4. guilt by association 5. structured…

1. Large-scale integrationof data and textLars Juhl Jensen 2. cellular network biology 3. association networks 4. guilt by association 5. molecular networks 6. proteins 7.…

1. The STRING database and relatedtoolsLars Juhl Jensen 2. association networks 3. guilt by association 4. molecular networks 5. computational predictions 6. gene fusion…

Slide 1Glycolysis Regualtion Dr. Sooad Al-Daihan Biochemistry department Slide 2 KEY CONCEPT QUESTIONS IN GLYCOLYSIS How do substrate availability and enzyme activity levels…

Slide 1 Computational Analysis of Tissue Specificity: Decoding Promoters Chris Stoeckert, Ph.D. Center for Bioinformatics & Dept. of Genetics University of Pennsylvania…