1.ClustalX Mr. Arvind Singh BII faculty2. ClustalX Clustal X is a new windows interface for the ClustalW multiple sequence alignment program. It provides an integrated environment…

1. Machine learning approach to protein fold class recognition when classes have low homology between their amino acid sequences Introduction Over the last several decades…

Slide 1GBS & GWAS using the iPlant Discovery Environment @ Plant & Animal Genome XXI - San Diego, CA Slide 2 Overview: This training module is designed to demonstrate…

Slide 1 Bioinformatics Alignment of pairs of sequence Local and global alignment Methods of alignment Dynamic programming approach Use of scoring matrices and gap penalties…

Slide 1 Progressive MSA Do pair-wise alignment Develop an evolutionary tree Most closely related sequences are then aligned, then more distant are added. Genetic distance…

Slide 1 Genome Evolution: Duplication (Paralogs) & Degradation (Pseudogenes) Slide 2  Genes related by duplication within a genome  May evolve new function …

Slide 1 Pair-wise Sequence Alignment What happened to the sequences of similar genes? random mutation deletion, insertion Seq. 1: 515 EVIRMQDNNPFSFQSDVYSYG EVI ++ P++ ++DV+SY…

http://creativecommons.org/licenses/by-sa/2.0/ From Genes to Proteins (and a little bit about allignments) Prof:Rui Alves [email protected] 973702406 Dept Ciencies Mediques…

Sequence-based Similarity Module (BLAST & CDD only ) & Horizontal Gene Transfer Module (Ortholog Neighborhood & GC content only) Phylogenetic tree of Bacteria…

PowerPoint Presentation BINF6201/8201 Hidden Markov Models for Sequence Analysis 4 11-29-2011 1 Choice of model topology The structure (topology) and parameters together…