1. SEQUENCE ALIGNMENT SPEED-UP A PARALLEL APPROACH University of Salerno Parallel and Concurrent Computing Course 19 February 2013 Giuliana Carullo Luca Pepe Daniele Valenza…

Slide 1Segment Alignment (SEA) Yuzhen Ye Adam Godzik The Burnham Institute Slide 2 Outline A new look at the local structure prediction Network matching problem Practical…

1.Transcript discovery and gene model correction using next generationsequencing dataSucheta Tripathy, 6th July 20122. NextGen Sequencing Methods 454 sequencing methods(2006)…

1.Need & Emergence of the Field Speaker Shashi Shekhar Head of computational Section Biowits Life Sciences2.  The marriage between computer science andmolecular biology◦…

Slide 1Thomas Jellema & Wouter Van Gool 1 Question Slide 2 2Answer Slide 3 3 Pairwise alignment using HMMs Wouter van Gool and Thomas Jellema Slide 4 Thomas Jellema &…

Slide 1Feature Based Image Mosaicing Satya Prakash Mallick Slide 2 Introduction Mosaicing methods can be classified broadly into 1. Direct Method: Uses information from all…

Slide 11 Aligning Multiple Genome Sequences With the Threaded Blockset Aligner Blanchette, W., Kent, W.J., Riemer, C., Elnitski, L., Smit, A.F.A., Roskin, K.M., Baertsch,…

Slide 1. Computational Genomics Lecture #2 This class has been edited from Nir Friedman’s lecture which is available at www.cs.huji.ac.il/~nir. Changes made by Dan Geiger,…

Slide 1 Biostatistics-Lecture 17 Single nucleotide polymorphism detection—an introduction Ruibin Xi Peking University School of Mathematical Sciences Slide 2 SNPs vs. SNVs…

Slide 1 Bioinformatics Alignment of pairs of sequence Local and global alignment Methods of alignment Dynamic programming approach Use of scoring matrices and gap penalties…