Slide 1Illumin8er: Software for the Illumina GAII Ian Carr, Joanne Morgan, Phil Chambers, Alex Markham, David Bonthron& Graham Taylor Leeds Institute of Molecular Medicine,…

Slide 1 Bioinformatic Analysis of Chromatin Genomic Data Giulio Pavesi University of Milano [email protected] Slide 2 Slide 3 Slide 4 “Nucleosome” The nucleosome…

1.Next Generation Sequencing forModel and Non-Model Organism 2nd dayJun Sese and Kentaro Shimizu [email protected] course lecture @Institute of Plant Biology, Univ.…

1.RNA-Seq Data AnalysisNational Bureau of Animal Genetic Resources Karnal2. Transcriptome Sequencing Sequencing steady state RNA in a sample is known as RNA-Seq. It is free…

Slide 1 Reconstruction of Haplotype Spectra from NGS Data Ion Mandoiu UTC Associate Professor in Engineering Innovation Department of Computer Science & Engineering University…

Transcriptome analysis Transcriptome analysis With a reference Challenging due to size and complexity of datasets Many tools available, driven by biomedical research GATK…

EDACC Primary Analysis Pipelines Cristian Coarfa Bioinformatics Research Laboratory Molecular and Human Genetics Data Levels Data Types Submitted To EDACC ChIP-Seq Shotgun…

Next-generation sequencing: informatics & software aspects Gabor T. Marth Boston College Biology Department Next-gen data Read length read length [bp] 0 100 200 300 ~200-450…

* Assembly by alignment Instead of overlap-layout-consensus we use alignment-consensus * Alignment algorithm AMOScmp uses MUMmer MUMmer will be covered in detail by Adam…

Informatics tools for next-generation sequence analysis Gabor T. Marth Boston College Biology Department University of Michigan October 20, 2008 Next-gen. sequencers offer…