Slide 1 Introduction to Short Read Sequencing Analysis Jim Noonan GENE 760 Slide 2 Sequence read lengths remain limiting For most applications reads are aligned to a reference…

Slide 1 H.Lu/HKUST L07: Lock Tuning Slide 2 L07-Lock Tuning - 2 H.Lu/HKUST Lock Tuning  The key is to combine the theory of concurrency control with practical DBMS knowledge…

Slide 1 Introducción a NGS Diseño Experimental y Controles de Calidad Antonio Rueda Slide 2 NGS technologies Slide 3 Library preparation Slide 4 Amplification Slide 5 From…

Slide 1 Assembly & Annotation at iPlant iPlant: Josh Stein (CSHL) Matt Vaughn (TACC) Dian Jiao (TACC) Zhenyuan Lu (CSHL) Nirav Merchant (U. Arizona) Michael Schatz (CSHL)…

Slide 1 De-novo Assembly Day 4 Slide 2 The Challenge Given many (millions or billions) of reads, produce a linear (or perhaps circular) genome Issues: – Coverage – Errors…

PowerPoint Presentation Bacterial Genome Assembly C. Victor Jongeneel Bacterial Genome Assembly | C. Victor Jongeneel | 2015 1 PowerPoint by Casey Hanson 1 Bacterial Genome…

Advanced ChIPseq Identification of consensus binding sites for the LEAFY transcription factor Scientific Objective The LEAFY transcription factor has been shown (Moyroud…

PowerPoint Presentation Anatomy of a Genome Project Sequencing De novo vs. ‘resequencing’ Sanger WGS versus ‘next generation’ sequencing High versus low sequence…

Slide 1 Whole Exome Sequencing for Variant Discovery and Prioritisation First, a recap. What have we learned? NGS platforms – short and long reads What the data looks like…

PowerPoint Presentation Introduction to Short Read Sequencing Analysis James Knight (with many slides adapted from Jim Noonan) GENE 760 Rule to remember when using bioinformatics…