Slide 1Sequence motifs, information content, logos, and HMMs Morten Nielsen, CBS, BioCentrum, DTU Slide 2 Outline Multiple alignments and sequence motifs Weight matrices…

Slide 1Artificial Neural Networks 1 Morten Nielsen Department of Systems Biology, DTU IIB-INTECH, UNSAM, Argentina Slide 2 InputNeural networkOutput Neural network: is a…

Slide 1Sequence Alignment and Phylogeny Dr Peter Smooker, [email protected] B I O I N F O R M A T I C S | | | | | | | B I O L O G Y - M A T H - S Slide 2 Uses of…

Slide 1 Advanced Database Searching June 24, 2008 Jonathan Pevsner, Ph.D. Introduction to Bioinformatics Johns Hopkins University Slide 2 Copyright notice Many of the images…

Slide 1Intro to Alignment Algorithms: Global and Local Intro to Alignment Algorithms: Global and Local Algorithmic Functions of Computational Biology Professor Istrail Slide…

Slide 1 Scoring Matrices June 19, 2008 Learning objectives- Understand how scoring matrices are constructed. Workshop-Use different BLOSUM matrices in the Dotter Program…

Slide 1 Review of important points from the NCBI lectures. –Example slides Review the two types of microarray platforms. –Spotted arrays –Affymetrix Specific examples…

Advanced BLAST Searching Courtesy of Jonathan Pevsner Johns Hopkins U. Outline of todayâs lecture Organism-specific BLAST sites Specialized BLAST-related algorithms BLAST-like…

Sequence Database Searching Eric Rouchka, D.Sc. [email protected] Bioinformatics Journal Club October 8, 2003 Sequence Format FASTA Format: Each sequence begins…

Sequence encoding, Cross Validation Morten Nielsen BioSys, DTU Outline Sequence encoding How to represent biological data Overfitting cross-validation Method evaluation Sequence…