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Documents How to Work With Affymetrix.Cel Files in geWorkbench Fan Lin, Ph. D Molecular Analysis Tools...

Slide 1 How to Work With Affymetrix.Cel Files in geWorkbench Fan Lin, Ph. D Molecular Analysis Tools Knowledge Center Columbia University and The Broad Institute of MIT and…

Documents 1 Preprocessing for Affymetrix GeneChip Data 1/18/2011 Copyright © 2011 Dan Nettleton.

Slide 1 1 Preprocessing for Affymetrix GeneChip Data 1/18/2011 Copyright © 2011 Dan Nettleton Slide 2 2 Affymetrix.CEL Files A.CEL file contains one number representing…

Documents Data Extraction cDNA arrays Affy arrays. Stanford microarray database.

Slide 1 Data Extraction cDNA arrays Affy arrays Slide 2 Stanford microarray database Slide 3 Go into public login select organism and the author Slide 4 If you chose to display…

Documents Microarray data analysis A practical example using GEPAS.

Slide 1 Microarray data analysis A practical example using GEPAS Slide 2 The GEPAS website http://gepas.bioinfo.cipf.es/ Slide 3 Tools roadmap Slide 4 Data exploration (input)…

Documents Microarray data analysis

Microarray data analysis A practical example using GEPAS The GEPAS website http://gepas.bioinfo.cipf.es/ Tools roadmap Data exploration (input) Go to Tools Viewers…

Documents Angela S Benton, BAS 1 , Alan M Watson, PhD 1,2 , Zuyi Wang, PhD 1,3 ,

TIMP-1 Nucleates a Critical Bronchial Epithelial Response Network to Tobacco Smoke in Asthma Angela S Benton, BAS1, Alan M Watson, PhD1,2, Zuyi Wang, PhD1,3, Mary C Rose,…

Documents Lab 5 Unsupervised and supervised clustering

Lab 5 Unsupervised and supervised clustering Lab 5 Unsupervised and supervised clustering Feb 22th 2012 Daniel Fernandez Alejandro Quiroz Outline Unsupervised Hierarchical…

Documents Differential Gene Expression with the limma package

Differential Gene Expression with the limma package Differential Gene Expression with the limma package 20 March 2012 Functional Genomics Linear regression Fit a straight…

Documents Metsada Pasmanik-Chor, TAU Bioinformatics Unit, 19/3/09 1 Making Sense of Public Domain Expression.....

Metsada Pasmanik-Chor, TAU Bioinformatics Unit, 19/3/09 * Making Sense of Public Domain Expression Data- GeneVestigator Metsada Pasmanik-Chor, TAU Bioinformatics Unit, 19/3/09…