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Science 2014 nci-edrn

1. STREAMING VARIANTCALLING?C. Titus BrownMichigan State UniversitySep 2014, NCI EDRN / Bethesda, MD 2. Mapping: locate reads in referencehttp://en.wikipedia.org/wiki/File:Mapping_Reads.png…

Education 2011-04-26_various-assemblers-presentation

1.Assembly tools and VisualisationMatthias HaimelEBI is an Outstation of the European Molecular Biology Laboratory.2. Overview• Assemblers • ABySS • SOAPdenovo• Visualisation…

Health & Medicine From infection to genbank torsten seemann - lscc - 27 apr 2012

1.From Infection to GenbankHow a pathogenic bacterium gets its genome to NCBITorsten SeemannVLSCI - Life Sciences Computation Centre - Genomics Theme - Lab Meeting - Friday…

Technology Slides Tamc07

1.TAMC 2007 25 th May, 2007 A Distributed Algorithm of FaultRecovery For Stateful FailoverIndranil Saha HTS (Honeywell Technology Solutions) Research Bangalore, IndiaEmail:…

Technology Ngs de novo assembly progresses and challenges

1. NGS de novo assembly: progresses and challengesYingruiLiBGI Shenzhen 2. Overall sketch of SOAPdenovo2 3. Overall sketch of SOAPdenovo3 4. Main issues in NGS de novo assemblyEfficient…

Technology 20110602labseminar pub

1. RNA-Seq (yag_ays)http://yag-ays.jp/pdf/20110602labseminar_pub.pdf 2. r e d n s oc eusagiusamimi 3. NGS(Next Generation Sequencing) RNA-Seq(Transcriptome Analysis)de novoTranscriptome…

Education Вяххи Н. Обучение биоинформатике. Форматы и опыт

1. Обучение биоинформатике Николай Вяххи [email protected] BDBM 2014, June 30 2. ! Algorithmic+Biology+Laboratory,+St.+Petersburg,+Russia,++…

Documents Large Plant Genome Assemblies using Phusion2 Zemin Ning The Wellcome Trust Sanger Institute.

Slide 1 Large Plant Genome Assemblies using Phusion2 Zemin Ning The Wellcome Trust Sanger Institute Slide 2 Phusion2 Assembly Pipeline NGS Data Assembly Contig Merge Filtering…

Documents Parallel Architectures: Topologies Heiko Schröder, 2003.

Slide 1 Parallel Architectures: Topologies Heiko Schröder, 2003 Slide 2 Parallel Architectures 2 Types of sequential processors (SISD) processor memory processor memory…

Documents CS267 Assignment 3: Parallelize Graph Algorithms for de Novo Genome Assembly Spring 2015.

Slide 1 CS267 Assignment 3: Parallelize Graph Algorithms for de Novo Genome Assembly Spring 2015 Slide 2 Problem statement Input: A set of unique k-mers and their corresponding…