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Documents BLAST (Basic Local Alignment Search Tool) In addition to the exact word, BLAST considers related...

Slide 1 BLAST (Basic Local Alignment Search Tool) In addition to the exact word, BLAST considers related words based on BLOSUM62: the neighborhood. Once a word is aligned,…

Documents Genome Analysis 2007 Lecture 7 C E N T R F O R I N T E G R A T I V E B I O I N F O R M A T I C S V U...

Slide 1 Genome Analysis 2007 Lecture 7 C E N T R F O R I N T E G R A T I V E B I O I N F O R M A T I C S V U E Iterative homology searching (PSI-BLAST) Slide 2 PSI (Position…

Documents Tools and Softwares Group 13 Shashi Ranjan Murali Sivaramakrishnan Ognjen Perisic.

Slide 1 Tools and Softwares Group 13 Shashi Ranjan Murali Sivaramakrishnan Ognjen Perisic Slide 2 Introduction Importance of aligning two sequences –Identify the structure…

Documents Iterative homology searching using PSI-BLAST, scoring statistics and performance evaluation

Iterative homology searching using PSI-BLAST, scoring statistics and performance evaluation Introduction to bioinformatics 2008 Lecture 10 Today: PSI-BLAST Statistical scoring…

Documents Introduction to bioinformatics 2007 Lecture 13

Introduction to bioinformatics 2007 Lecture 13 Iterative homology searching, PSI (Position Specific Iterated) BLAST basic idea use results from BLAST query to construct a…

Documents Introduction to Bioinformatics

Introduction to Bioinformatics Lecture 12: Iterative homology searching and Protein Structure-Function Relationships Centre for Integrative Bioinformatics VU (IBIVU) PSI…