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De-novo Assembly Day 4. The Challenge Given many (millions or billions) of reads, produce a linear (or perhaps circular) genome Issues: – Coverage – Errors.
Documents De-novo Assembly Day 4. The Challenge Given many (millions or billions) of reads, produce a linear.....

Slide 1 De-novo Assembly Day 4 Slide 2 The Challenge Given many (millions or billions) of reads, produce a linear (or perhaps circular) genome Issues: – Coverage – Errors…

CS 394C March 19, 2012 Tandy Warnow. 2 DNA target sample SHEAR & SIZE End Reads / Mate Pairs 550bp 10,000bp Shotgun DNA Sequencing Not all sequencing.
Documents CS 394C March 19, 2012 Tandy Warnow. 2 DNA target sample SHEAR & SIZE End Reads / Mate Pairs 550bp.....

CS 394C March 19, 2012 Tandy Warnow * DNA target sample SHEAR & SIZE End Reads / Mate Pairs 550bp 10,000bp Shotgun DNA Sequencing Not all sequencing technologies produce…

CS 394C Oct 16, 2013
Documents CS 394C Oct 16, 2013

CS 394C Oct 16, 2013 Tandy Warnow * DNA target sample SHEAR & SIZE End Reads / Mate Pairs 550bp 10,000bp Shotgun DNA Sequencing Not all sequencing technologies produce…

De-novo Assembly
Documents De-novo Assembly

De-novo Assembly De-novo Assembly Day 4 The Challenge Given many (millions or billions) of reads, produce a linear (or perhaps circular) genome Issues: Coverage Errors in…

CS 394C March 19, 2012
Documents CS 394C March 19, 2012

CS 394C March 19, 2012 Tandy Warnow * DNA target sample SHEAR & SIZE End Reads / Mate Pairs 550bp 10,000bp Shotgun DNA Sequencing Not all sequencing technologies produce…

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