Slide 1QueryAtlas Steve Pieper, Greg Brown, David Kennedy, Maryanne Martone, Jyl Boline, Burak Ozyurt, Wendy Plesniak, Michael Halle, Anna Tang, and Florin Talos Slide 2…

1. fMRI Data AnalysisSonia Pujol, Ph.D. Wendy Plesniak, Ph.D. Randy Gollub, M.D., Ph.D. 2. Acknowledgments National Alliance for Medical Image Computing NIH U54EB005149Neuroimage…

Frequently Asked Questions for NIfTI and ANALYZE tools Orientation related question Is it possible to use reslice_nii to apply a transform to a nifti volume? for example,…

Slide 1 Applying FreeSurfer Tools to FSL fMRI Analysis 1 Integrating FreeSurfer and FSL FEAT Slide 2 Applying FreeSurfer Tools to FSL fMRI Analysis 2 Outline Registering…

Slide 1 1 Integrating FreeSurfer and FSL FEAT Slide 2 2 Outline Registering FEAT  FreeSurfer Anatomical Automatic (FLIRT) Manual (tkregister2) Surface-based Group fMRI…

QueryAtlas Steve Pieper, Greg Brown, David Kennedy, Maryanne Martone, Jyl Boline, Burak Ozyurt, Wendy Plesniak, Michael Halle, Anna Tang, and Florin Talos QueryAtlas: a Slicer3…

QueryAtlas Steve Pieper, Greg Brown, David Kennedy, Maryanne Martone, Jyl Boline, Burak Ozyurt, Wendy Plesniak, Michael Halle, Anna Tang, and Florin Talos QueryAtlas: a Slicer3…

QueryAtlas Steve Pieper, Greg Brown, David Kennedy, Maryanne Martone, Jyl Boline, Burak Ozyurt, Wendy Plesniak, Michael Halle, Anna Tang, and Florin Talos QueryAtlas: a Slicer3…

Multimodal Integration Overview Affine transformations Registration, Automatic and Manual fMRI Integration fMRI Analysis Intro Registration Viewing on Volume and Surface…