WFCC Global Catalogue of Microorganisms (GCM) … Global Catalogue of...WFCC Global Catalogue of Microorganisms (GCM) For culture collections: a reliable and user- friendly system

WFCC

Global Catalogue of Microorganisms (GCM)

Introduction

World Data Center of Microorganisms(WDCM)

Oct. 2012

1 Rectangle graphics Outlines

Part 1: GCM: mission, functional architecture and

progress

Part 2: Minimum and Recommended Data Sets

Part 3: GCM for the data users

Part 4: GCM for the culture collections

WFCC Global Catalogue of Microorganisms (GCM)

For culture collections: a reliable and user-

friendly system to help culture collections to

manage, disseminate and share the information

related to their holdings.

For scientific and industrial data users: supports

them by integrated database and tools with a

simple and flexible user interface.

An initiative launched by the World Data Center for Micro-organisms

Common Data standards

Regional network

Collections

Collections

Training

DBMS

Microbial Resources Data Warehouse

Literature

Sequence

Patents ISO

CCINFO

WFCC Global Catalogue of

Microorganisms (GCM)

ABC datamining

Microbial Cloud

ABC

Research community: SNS/Video conference

Contributions and benefits of CCs

WFCC Global

Catalogue

Contributions Benefits

Promote visibility

Provide online catalogue for CC

Provide data management services for small CC

Provide platform for data and resource exchanges

Benefits from industrial application of strains

Training

Catalogue information in XML, Excel, Mysql file.

Further cooperate with WFCC WDCM for industrial application of microbial resources

GCM Statistics

Counts

Strains 233,789

Species 36,623

Culture Collections 36

Countries 19

Homepage： gcm.wfcc.info

1 Rectangle graphics Overview

Part 1: GCM: mission, functional

architecture and progress

Part 2: Minimum and Recommended Data Sets

Part 2: GCM for the data users

Part 3: GCM for the culture collections

WDCM MDS is composed of 15 fields. The input files could be either EXCEL or XML.

1 Rectangle graphics Overview

Part 1: GCM: mission, functional

architecture and progress

Part 2: Minimum and Recommended Data Sets

Part 3: GCM for the data users

Part 4: GCM for the culture collections

eOffice Solution Planning

Strain Page Species Page

Search options

Filter

Display format

strain number/name

Search literature

Advanced Search

Homology search

Browse taxonomy tree By Culture collection

By isolation sources

By strain number/name

On Google map

Organism type

Location

Temperature

Further analysis

Search GCM by Strain Name and Strain Number

Search results

Filtering search result and customizing the output format

Formats to display the search results

Link to Species page

Display the search result in a list of culture collections

Display the table of isolation sources

Display the Geographic origin of strains

Advanced search interface

Advanced search interface

Searching results of sequence similarity

Searching strains by publications and patents

Searching results by publications and patents

Link out to CCINFO database

List of culture collections in the search result

Catalogue information from collections

Link back to original site

Publications explored by Analyzer of Bio-resources Citations(ABC)

Exploring information about a strain

Sequences explored by ABC

Detailed information of Strains

Patents explored by ABC

Choose sequences to execute bioinformatics analysis

Exploring information about a species

Exploring information about a species

Publications related to the strains

Exploring information about a species

Publications related to this species

Species information

Patents related with this species explored by ABC

Adding your own comments

What users can do for the strain information?

Bioinformatics Analysis

Exchange of strains with collections

Communicate with others on this platform

Choose sequences to execute bioinformatics analysis

Multiple Alignment of selected sequences

Order strains online

Users can add comments on species page

1 Rectangle graphics Overview

Part 1: GCM: mission, functional

architecture and progress

Part 2: Minimum and Recommended Data Sets

Part 3: GCM for the data users

Part 4: GCM for the culture collections

Workflow

Register in CCINFO

Join in GCM Publish online

Catalogue

Provide ABC and Name

check results

Provide the DBMS

WDCM Number and

Acronym

Strain Number and Name

DBMS for culture collections

Provides:

In-house data management

Homepage

Online Catalogue

Choose data items according to your own catalogue items

Import your data in EXCEL file

Export an EXCEL template for data management

Managing your data in EXCEL file

Submit your data through EXCEL template directly

Manage and add new accounts

Director of WDCM

Dr. Juncai MA,

[email protected]

GCM team supports

Dr. Linhuan WU

[email protected]

ABC team supports

Ms. Qinlan SUN

[email protected]

Thanks for your supports,

for any of your suggestions and comments please contact: