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THE EPIDEMIOLOGY OF FOOT AND MOUTH DISEASE IN MALAYSIA SITI ZUBAIDAH BINTI RAMANOON DVM (UPM), MSC. (GUELPH) THIS THESIS IS PRESENTED FOR THE DEGREE OF DOCTOR OF PHILOSOPHY OF MURDOCH UNIVERSITY, 2016
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SITI ZUBAIDAH BINTI RAMANOON DVM (UPM), MSC (GUELPH · 2016. 8. 2. · 2.1 Foot and mouth disease 9 2.2 Foot and mouth disease virus 10 2.3 Host range and pathogenesis 13 2.4 Clinical

Feb 13, 2021

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  • THE EPIDEMIOLOGY OF FOOT AND MOUTH DISEASE IN MALAYSIA

    SITI ZUBAIDAH BINTI RAMANOON

    DVM (UPM), MSC. (GUELPH)

    THIS THESIS IS PRESENTED FOR THE DEGREE OF DOCTOR OF PHILOSOPHY OF

    MURDOCH UNIVERSITY, 2016

  • ii

    I declare that this thesis is my own account of my research and contains

    as its main content work which has not previously been submitted for

    a degree at any tertiary education institution.

    Siti Zubaidah Binti Ramanoon

  • iii

    Dedication

    This thesis is dedicated to my husband Adriandy Lubis Saparno for his

    love and support, and for sharing the pain and joy throughout this

    special journey in Australia (and in life); to my beloved son Akasha

    Rosman Ehsan as the source of encouragement, inspiration, motivation

    and my sweetheart forever.

  • iv

    ABSTRACT

    The objectives of the present study were to determine the prevalence of foot and

    mouth disease (FMD) and the serotypes of foot and mouth disease virus (FMDV) in

    Malaysia; to describe the temporal and spatial distribution of FMD in Malaysia; to

    evaluate the risk of the introduction of FMD to Malaysia; to evaluate the effectiveness

    of mitigation strategies adopted in Malaysia during outbreaks of FMD; and ultimately

    to give recommendations on FMD control to the Malaysia-Thailand-Myanmar (MTM)

    Tri-state Commission and Zoning Working Groups.

    The first documented outbreak of FMD in Peninsular Malaysia was in the 1860s

    and, although there have been periods where no outbreaks have been reported, the

    disease is now endemic in Peninsular Malaysia. Serotypes A, O and Asia 1 have been

    involved in the outbreaks of FMD in Peninsular Malaysia. In contrast the states of

    Sabah and Sarawak, located on Borneo have never had a reported outbreak of FMD.

    The virus strains involved in outbreaks in Peninsular Malaysia are closely related to

    those in southern Thailand and outbreaks have occurred in both countries at similar

    times.

    A total of 622 outbreaks of FMD were reported between 2001 and 2011 in

    Peninsular Malaysia. Serotype O was responsible for 92% of the 253 outbreaks

    serotyped and A in 8%. The number of outbreaks of FMD differed significantly

    between years (χ2=621, P

  • v

    months. Outbreaks of FMD in Peninsular Malaysia were most prevalent in Kedah

    (n=95). There was a significant correlation between the number of outbreaks and the

    average population size of cattle (r=0.731, P=0.007), buffalo (r=0.625, P=0.03) and

    goats (r=0.652, P=0.021). Cattle were involved in most outbreaks (87%). The overall

    prevalence of clinical disease was highest in cattle (15.4%), followed by buffalo

    (9.9%), goats (6.8%), sheep (6.6%) and pigs (6.5%). Cattle (odds ratio, OR=2.6, 95%

    CI 2.5, 2.8) and buffalo (OR=1.6, 95% CI 1.4, 1.8) were significantly more likely to

    be reported with clinical signs of disease than pigs. The case-fatality rate in cattle was

    0.2% and goats 0.5%. The main sources of outbreaks were hypothesised to be the

    introduction of new animals or the illegal movement of animals (66% of outbreaks).

    A combination of control measures, including ring vaccination, animal movement

    management and quarantine, were implemented during outbreaks.

    The animal seroprevalence of FMD by the NSP test in cattle, buffalo, goats and

    sheep were 24.2% (95% CI: 23.8, 24.6), 52.7% (95% CI: 50.5, 55), 11.8% (95% CI:

    11, 12.6) and 9.5% (95% CI: 6.9, 12.6), respectively. These findings indicate natural

    infection and provide evidence that the virus was circulating in the livestock

    population. Males were 2.2 (OR 95% CI: 2.04, 2.3) times more likely to be NSP

    positive than were females. Cattle belonging to the Murrah breed (OR=1.6, 95% CI:

    1.3, 2.0) and dairy breeds (OR=1.3, 95% CI: 1.2, 1.5) were more likely to be

    seropositive than were meat breeds. The whole peninsula was infected with FMD

    (range of point prevalences 6 to 37% in Kuala Lumpur and Kelantan, respectively).

    In cattle, the overall seroprevalence based on the liquid phase blocking ELISA

    titre (LPBET) (positive titre >45) for type O (n=3025) was 74% (95% CI: 72, 76) and

    52% (95% CI: 50, 53) of animals had protective titres (titre > 90). The findings indicate

    that, on average, the protective levels of antibody to type O in cattle were below the

  • vi

    recommended level. In imported cattle (n=3295), more than 90% were positive on the

    LPBE percentage inhibition (PI) to type O and 49% were NSP positive indicating that

    they had been vaccinated and also exposed to a natural infection. This finding

    highlights that infected imported cattle may be an important source of FMD outbreaks,

    thus livestock consignments should be closely monitored. Based on the results of the

    LPBET adequate protective levels were present to serotype O in buffalo but not in

    goats, sheep or pigs.

    The results from the simulation study for the risk of introduction of FMD via

    importation of live cattle from Thailand showed that there is almost a 100% probability

    that there will be at least one infectious animal that is capable of transmitting infection

    being accepted for importation into Peninsular Malaysia in any given year. The

    estimated total number of outbreaks was 26 per year (range: 10-182; 95% CI: 1, 27)

    and the probability of outbreaks following effective contact was 92%. This indicates

    that importation of live cattle from Thailand is a strong factor contributing to the

    likelihood of outbreaks in Peninsular Malaysia. Furthermore, Malaysia is at

    continuous risk as long as the importation of live animals continues from infected

    countries. To reduce risk, interventions, including pre-arrival testing, vaccination and

    improved farm biosecurity, should be adopted on farms, irrespective if the new

    animals are from another country or from within Peninsular Malaysia.

    In conclusion, FMD is endemic in Peninsular Malaysia and movement of

    animals plays a major role in the spread of FMD. The protective level of immunity

    induced by vaccination was below the recommended level. Imported live cattle from

    Thailand could be infected with FMD and a potential source for introducing new

    strains of virus to Peninsular Malaysia. Therefore, studies should be conducted to trace

    the farms of origin of these imported cattle. The findings from this study could be used

  • vii

    to improve the existing control strategy for FMD in Peninsular Malaysia thus

    ultimately underpinning the MTM FMD Campaign.

  • viii

    Table of Contents

    Abstract iv

    Table of Contents viii

    Acknowledgments xii

    List of tables xiv

    List of figures xx

    List of abbreviations xxv

    Chapter 1 Introduction 1

    1.1 Background to the study 1

    1.2 Aims and objectives of this study 6

    1.3 Structure of the thesis 7

    Chapter 2 Literature Review 9

    2.1 Foot and mouth disease 9

    2.2 Foot and mouth disease virus 10

    2.3 Host range and pathogenesis 13

    2.4 Clinical signs 14

    2.5 Subclinical and persistent infections 17

    2.6 Economic losses from outbreaks of foot and

    mouth disease (FMD)

    18

    2.7 Epidemiology of FMD 20

    2.7.1 Virus survival 20

    2.7.2 Transmission 22

    2.7.3 Global distribution of FMD 24

    2.7.4 Foot and mouth disease in Malaysia 28

    2.7.5 Risk factors for FMD 31

    2.7.6 Risk assessment for FMD 33

    2.8 Diagnosis of FMD 36

    2.8.1 Field diagnosis 36

    2.8.2 Laboratory diagnosis 39

    2.8.3 Types of samples to collect 45

    2.9 Treatment 46

    2.10 Prevention and control 47

    Chapter 3 Foot and mouth disease in Malaysia from the 1860s to

    2005

    52

    3.1 Introduction 54

    3.2 Materials and methods 54

    3.2.1 Source of data 54

    3.2.2 Data management and analysis 55

    3.3 Results 57

    3.4 Discussion 66

  • ix

    Chapter 4 Outbreaks of foot and mouth disease in Malaysia from

    2001 to 2011

    72

    4.1 Introduction 72

    4.2 Materials and methods 75

    4.2.1 Study design 75

    4.2.2 Target and study population 75

    4.2.3 Data analysis 76

    4.3 Results 78

    4.3.1 Distribution of outbreaks of FMD in

    Peninsular Malaysia from 2001 to 2011

    78

    4.3.2 Distribution of outbreaks by month 80

    4.3.3 Distribution of outbreaks of FMD in the

    states of Peninsular Malaysia

    83

    4.3.4 Distribution of outbreaks of FMD in

    different species

    85

    4.3.5 Prevalence of FMD 86

    4.3.6 Proportion of animals deaths, culled or

    slaughtered because of FMD

    90

    4.3.7 Spread of FMD 91

    4.3.8 Control measures instigated for the

    outbreaks

    93

    4.4 Discussion 94

    Chapter 5 A retrospective study of serological surveys of foot and

    mouth disease conducted in Malaysia (1995 to 2007)

    106

    5.1 Introduction 106

    5.2 Materials and Methods 106

    5.2.1 Population at risk 106

    5.2.2 Source of data 107

    5.2.3 Disease reporting system and diagnosis 108

    5.2.4 National FMD control programme 109

    5.2.5 FMD tests used 110

    5.2.5.1 Liquid phase blocking ELISA

    test (LPBE)

    110

    5.2.5.2 Non-structural proteins 3ABC

    ELISA (NSP ELISA)

    111

    5.2.6 Data analysis 112

    5.3 Results 114

    5.3.1 Overall 114

    5.3.2 Host factors for FMD 121

    5.3.2.1 Species-specific and age 121

    5.3.2.2 Gender 127

    5.3.2.3 Species 129

    5.3.2.3.1 Cattle sera and

    specific antibodies

    132

    5.3.2.3.2 Buffalo sera and

    specific antibodies

    135

    5.3.2.3.3 Goat sera and

    specific antibodies

    136

  • x

    5.3.2.3.4 Sheep sera and

    specific antibodies

    137

    5.3.2.3.5 Pig sera and specific

    antibodies

    138

    5.3.3 Temporal distribution of foot and mouth

    disease

    139

    5.3.3.1 Seasonal pattern of FMDV

    infection based on the results of

    the NSP test

    139

    5.3.4 Geographical distribution of foot and

    mouth disease in Malaysia

    143

    5.3.4.1 Distribution of FMD infection

    detected by the non-structural

    protein (NSP) test in Malaysia

    for the period 1995 to 2007

    143

    5.3.4.2 Distribution of FMDV

    antibodies detected by the

    liquid phase blocking ELISA

    (LPBE) test in percentage

    inhibition (PI) and titre, in

    Malaysia, 1995-2007

    144

    5.3.5 Predictive values of NSP test in the

    states of Peninsular Malaysia

    148

    5.3.6 Simultaneous analysis of the results for

    LPBE (PI and titre) and the NSP tests of

    Peninsular Malaysia, 1995-2007

    148

    5.3.7 Relationship between the NSP results

    and LPBEPI and LPBET to antibodies

    against serotype O, A and Asia1

    149

    5.3.8 Confidence in FMD-free status of

    Wilayah Persekutuan Labuan, Sabah

    154

    5.3.9 Relationship between the NSP positive

    and protective level of antibodies in

    Peninsular Malaysia

    154

    5.3.10 Level of antibody protection in

    vaccinated animals

    160

    5.3.11 Evaluation of the results of samples from

    imported cattle

    160

    5.3.12 Evaluation of samples from active

    serological surveillance activity

    161

    5.4 Discussion 161

    Chapter 6 Quantitative risk assessment for the introduction of foot

    and mouth disease into Peninsular Malaysia via the

    importation of live cattle from Thailand

    177

    6.1 Introduction 177

    6.2 Materials and methods 180

    6.2.1 General approach 180

    6.2.2 Identification of hazard and definition of

    the unit of analysis

    182

  • xi

    6.2.3 Model formulation 182

    6.2.4 Definition of distributions for input

    variables

    186

    6.2.4.1 Prevalence of FMD in Thailand

    (Prev. Low-High)

    186

    6.2.4.2 Number of animals imported

    (Nimport)

    187

    6.2.4.3 Number of consignments from

    Thailand (Ncons)

    187

    6.2.4.4 Number of live cattle in each

    consignment (N)

    188

    6.2.4.5 Calculation of the prevalence of

    FMD in consignments

    188

    6.2.4.6 Number of live cattle in the

    consignment with clinical signs

    (Nclinical)

    188

    6.2.4.7 Number of “healthy” cattle

    detected with clinical signs of FMD

    (Nhealthy)

    189

    6.2.4.8 Number of FMD-infected cattle

    not detected by the NSP test (“s”)

    189

    6.2.4.9 Number of undetected inected

    cattle that survived the infection (“s”

    new)

    189

    6.2.4.10 Number of FN cattle that

    survived the infection and were

    infectious (Ninf)

    189

    6.2.4.11 Number of animals that were

    able to transmit FMD infection to other

    cattle on anew farm (Nfinal)

    190

    6.2.4.12 Number of new infections

    (Nnewinf)

    190

    6.2.5 Relationship between Ninf and Nfinal 191

    6.2.6 Comparison of two models with and

    without adopting farm-quarantine

    191

    6.2.7 Model environment and software 191

    6.2.8 Sensitivity analysis 192

    6.3 Results 192

    6.3.1 True prevalence (Ptrue) of FMD in

    consignments

    192

    6.3.2 Summary statistics of the simulations’

    results

    194

    6.3.3 Sensitivity analysis 204

    6.4 Discussion 205

    Chapter 7 General Discussion 212

    References 222

  • xii

    ACKNOWLEDGMENTS

    First of all, Alhamdulillah, praise to Allah the Almighty for His blessings in my

    life. Secondly, I would like to express my sincere gratitude to my principle supervisor,

    Professor Ian Robertson for all that he has taught me about epidemiology, for his

    kindness, understanding and support throughout my post-graduate study, and for

    always making time, even when he had none, and his kindness to my family; to my

    other supervisors: Professor John Edwards for his guidance throughout my study and

    appreciate the lively discussion with him on many aspects of FMD particularly in the

    context of Southeast Asia (SEA) and as a very important transboundary disease, his

    inter-personal relationship with us the international students had made the stay in

    Australia more exciting; Associate Professor Dr Latiffah Hassan for her support

    throughout the project; and Dr Kamaruddin Md Isa for providing me the data and

    networking with the FMD-community in Malaysia. I am also very grateful to Dr Rob

    Dobson for his tremendous help with my Chapter 6.

    I would like to acknowledge the Civil Service Department then later changed to

    the Ministry of Higher Education, and Universiti Putra Malaysia (UPM), for the

    financial support throughout the study period. I am also very thankful to the Australian

    Biosecurity Cooperative Research Centre (AB-CRC) for the professional scholarship

    that had enabled me to attend conferences and workshops.

    I am grateful for the help and advice from the former and the current directors

    of the national FMD laboratory of Kota Bharu Kelantan of DVS particularly Dr

    Mohammed Naheed Mohd Hussein, Dr Azman Shah, and Dr Norlida Othman. The

    technical help from En Daud is also acknowledged.

  • xiii

    I would like to thank the Director General of the DVS for the permission to

    provide the data for this research, the SEACFMD team in Bangkok: Dr Ronello Abila,

    Ms Nicky, and particularly Dr Stephane Forman for the help on the web-based data,

    and Dr Banjong Jograkwattana of Thai Department of Livestock Development (DLD)

    for his expert opinion. I would also like to thank the members of the Malaysia-

    Thailand-Myanmar (MTM) Epidemiological Network (EpiNet) for their commitment

    in this network which I believe important in the success of the MTM Campaign.

    To my friend Kyaw Naing Oo, I am honoured to know and work with him. The

    help and friendship of Pebi, Tum, Jarunee, Acacio, Jim, BicBic, Elaine and Nichole,

    are greatly appreciated. Life in Australia was more exciting with the friendship and

    moral support from my Malaysian friends: Mawar, Jellie, Aida, Kak Zah, Kak Nyza,

    Ain, Ati, Wan Sofiah, and Marina, and also friends at the FPV, UPM.

    Lastly, I thank my very dearest family: my mother Marhendon and late father

    Ramanoon who had raised me with lots of love and du’a, encouragement, and the

    happy moments of childhood despite hardship; to all my brothers and sisters for always

    being there for me; to my nephews and nieces who have added more colours to my

    life; and finally to my dearest husband Adriandy Lubis for his love, patience, and his

    shoulder for me to cry on, and my beloved son Akasha who means so much in our

    lives and somehow someway he is one of the reasons for the completion of this thesis.

  • xiv

    List of tables Page

    Table 2.1 Summary of sensitivity and specificity of FMD tests 38

    Table 2.2 Summary of sensitivity and specificity of FMD tests for

    laboratory diagnosis

    41

    Table 2.3 Summary of sensitivity and specificity of NSP-based

    diagnostic tests for FMD

    43

    Table 3.1 Timing of outbreaks of foot and mouth disease in different

    states of Peninsular Malaysia (1909-2005)

    60

    Table 3.2 Total number of outbreaks (N=34) of foot and mouth disease

    in Peninsular Malaysia, and the serotypes involved (1909-

    2005)

    63

    Table 3.3 Distribution of outbreaks of foot and mouth disease in

    Peninsular Malaysia by species (1909-2005)

    63

    Table 3.4 Source of outbreaks recorded from 1860 to 2005 65

    Table 3.5 Location of FMD outbreaks in Malaysia recorded from

    1860-2005

    66

    Table 4.1 The population of livestock in the states of Malaysia in 2011 76

    Table 4.2 The number of outbreaks of FMD and FMDV serotypes

    isolated from outbreaks in Peninsular Malaysia from 2001

    to 2011

    79

    Table 4.3 The association between months and serotypes of FMDV

    (2001 to 2011)

    82

    Table 4.4 Distribution of outbreaks of FMD in Peninsular Malaysia

    from 2001 to 2011

    83

  • xv

    Table 4.5 The number of outbreaks of FMD in Peninsular Malaysia

    with the virus serotypes (2001-2011)

    80

    Table 4.6 Distribution of the number of outbreaks in different species

    of livestock in Peninsular Malaysia (2001-2011)

    84

    Table 4.7 Distribution of outbreaks in different species and states of

    Peninsular Malaysia between 2001 and 2011

    85

    Table 4.8 The overall prevalence of FMD cases in different species of

    livestock in Peninsular Malaysia (2001-2011)

    85

    Table 4.9 Prevalence and odds ratios of FMD cases between 2001 and

    2011 in each susceptible species in Peninsular Malaysia

    86

    Table 4.10 Average monthly number of cases of FMD in different

    species of livestock in Peninsular Malaysia (2001-20011)

    88

    Table 4.11 Prevalence of FMD in the states of Peninsular Malaysia in

    different species (2001-2011)

    89

    Table 4.12 The percentage of animals dying from FMD, culled because

    of disease or being specifically slaughtered due to FMD

    (2001-2011)

    90

    Table 4.13 Epidemiological sources of infection for outbreaks of FMD

    in Peninsular Malaysia (2001-2011)

    91

    Table 4.14 Control measures adopted during outbreaks of FMD in

    Malaysia (2001-2007)

    92

    Table 5.1 Distribution of livestock in Peninsular Malaysia (2006) 107

    Table 5.2 Number and percentage of samples from each state tested at

    the national laboratory for FMD in Kota Bharu Kelantan

    (1995-2007)

    115

  • xvi

    Table 5.3 Frequency and percentage distribution of samples by species

    and breed that were tested at the FMD laboratory Kota

    Bharu Kelantan (1995-2007)

    115

    Table 5.4 Number of samples processed by the national FMD

    laboratory in Kota Bahru Kelantan (1995-June 2007)

    117

    Table 5.5 Cross-tabulation between age group and NSP test results by

    species, with the prevalence (%) and its 95% confidence

    intervals (CI)

    122

    Table 5.6 Descriptive statistics of the results of percentage inhibition

    (PI) on the LPBE test for young and adult animals of all

    species

    124

    Table 5.7 Prevalence of FMD virus in adult and young animals based

    on LPBEPI (PI>50 as positive)

    126

    Table 5.8 Relationship between serotypes of FMDV based on LPBE

    test results in percentage inhibition (LPBEPI) and antibody

    titre (LPBET)

    127

    Table 5.9 Numbers (95%CI) of male and female animals in Peninsular

    Malaysia which were antibody-positive for one or more

    serotypes of FMD virus based on LPBEPI

    128

    Table 5.10 Prevalence and the 95% Confidence Intervals (CI) and the

    odds ratios (95% CI) of FMD as determined by the NSP test

    in different species and breeds

    130

    Table 5.11 Frequency and percentage distribution of antibody titres

    against serotype O FMDV in cattle (N=3328) according to

    the year

    133

  • xvii

    Table 5.12 The association between years and seropositivity to FMDV

    antibodies type O and the protective level

    134

    Table 5.13 Reactivity of positive cattle (N=2015) to serotypes O, A, and

    Asia 1 (1999-2007)

    135

    Table 5.14 Distribution of antibody titres against serotype O FMDV in

    buffalo (N=123) in 2004 and 2005

    136

    Table 5.15 Reactivity of positive buffaloes (N=114) to serotypes of

    FMDV in 2004 and 2005

    136

    Table 5.16 Distribution of antibody titres (% prevalence and 95%CI)

    against serotype O FMDV in goats (N=120) in 2000, 2004

    and 2005 (Missing data for other years)

    137

    Table 5.17 Reactivity of positive goats (N=54) to serotypes of FMDV

    in 2000, 2004 and 2005 (Missing data for other years)

    137

    Table 5.18 Distribution of antibody titres against serotype O FMDV in

    sheep (N=42) in 2004 and 2005 (Missing data for other

    years)

    138

    Table 5.19 Reactivity of positive sheep (N=11) to serotypes of FMDV

    in 2004 and 2005 (Missing data for other years)

    138

    Table 5.20 Distribution of antibody titres against serotype O FMDV in

    pigs (N=54) according to the year

    139

    Table 5.21 Reactivity of positive pigs (N=6) to 1, 2 or 3 serotypes of

    FMDV in 2000 and 2005

    139

    Table 5.22 Distribution of FMD infection detected by the liquid-phase

    ELISA (LPBE) test in (a) percentage inhibition (PI) and (b)

    145

  • xviii

    titre, in Malaysia, 1995-2007 expressed as percentage and

    the 95% confidence intervals (CI)

    Table 5.23 Odds ratio (95% CI) for the association between states of

    Peninsular Malaysia and LPBEPI and LPBET to serotype O,

    A or Asia 1 (1995-2007)

    147

    Table 5.24 Relationship between the NSP test, LPBEPI and LPBET for

    serotype O, A and Asia 1 tested in livestock in Peninsular

    Malaysia (1995-2007)

    151

    Table 5.25 Summary statistics for the estimated prevalence by beta

    distribution of the LPBEPI test on samples from Wilayah

    Persekutuan Labuan Sabah

    154

    Table 5.26 Comparison between protective levels of antibodies to types

    O, A and Asia 1 and the NSP tests in Peninsular Malaysia,

    1995-2007

    157

    Table 5.27 Cross-tabulation of test results of liquid-phase blocking

    ELISA (LPBE) based on the titre and the non-structural

    protein (NSP) 3ABC for FMDV antibody detection in

    vaccinated animals (n=222)

    160

    Table 6.1 Equations, assumptions, and sources of information used to

    formulate and to parameterize a model to assess the risk of

    the introduction of FMD virus into Peninsular Malaysia

    183

    Table 6.2 Summary statistics for the true prevalence of FMD in

    consignments resulting from simulations performed using

    hypothetical data

    192

    Table 6.3 Summary statistics from the model 193

  • xix

    Table 6.4 Comparison of the summary statistics between the two

    models that considered farm-quarantine versus no farm-

    quarantine

    202

    Table 6.5 Sensitivity analysis of the effect of prevalence of FMD in

    Thailand in a year (Prev. Low-High) on Nfinal and Nnewinf

    203

  • xx

    List of figures Page

    Figure 3.1 Zones defined in accordance with the minimum

    Standard Definitions and Rules for control and

    eradication of FMD in the MTM Peninsula (DVS Plan:

    Control Zone, Proposed Eradication Zone)

    53

    Figure 3.2 Number of outbreaks of foot and mouth disease in

    Malaysia from 1860 to 2005

    55

    Figure 3.3 The number of outbreaks of foot and mouth disease and

    serotype of FMD virus in Peninsular Malaysia, 1909-

    2005

    56

    Figure 3.4 Percentage of outbreaks of FMD in Peninsular

    Malaysia (N=34) caused by different virus serotypes

    (1909-2005)

    60

    Figure 3.5 Distribution of outbreaks of foot and mouth disease by

    species and year, in Peninsular Malaysia (N=168)

    (1860-2005)

    62

    Figure 4.1 Distribution of FMD outbreaks in Peninsular Malaysia

    from 2001 to 2011

    77

    Figure 4.2 Distribution of outbreaks of FMD in Malaysia, by

    month of report (2001-2007)

    78

    Figure 4.3 Relationship between the monthly total number of

    outbreaks, (A) mean temperature (ºC), and (B) mean

    monthly rainfall (mm) during the 2001-2011 period

    79

    Figure 4.4 Distribution of outbreaks of FMD in Peninsular

    Malaysia between 2001 and 2011

    80

  • xxi

    Figure 4.5 Average monthly prevalence of FMD cases in buffalo,

    cattle, goats, pigs and sheep (2001-2011)

    85

    Figure 5.1 Distribution of FMDV antibodies in all samples based

    on LPBE test results in percentage inhibition (PI) for

    serotypes O(N=72,326), A(N=71,625) and Asia

    1(N=72,245)

    117

    Figure 5.2 Distribution of antibody titre based on LPBE test for

    FMDV serotypes O (N=3477), A(N=3497) and Asia 1

    (N=3506)

    118

    Figure 5.3 Boxplot for the LPBEPI for serotypes O, A, and Asia 1

    for all processed samples (*, **, *** indicate

    significant difference between serotypes at P

  • xxii

    June=4495, July=5284, Aug=2807, Sept=4179,

    Oct=3802, Nov=3802, Dec=7962, Overall=65207)

    Figure 5.7 Distribution of NSP positive in percentages by month

    and year from 1995 to 2007, and the relationship with

    the monsoon seasons (Southwest monsoon, May-Sept;

    Northeast monsoon, Nov-Mac; Inter-monsoon season-

    March, April and October), cultural (the Chinese New

    year) and religious festivals (Eid-Fitri and Eid-Adha)

    141

    Figure 5.8 Prevalence (%) of FMD based on NSP positive in

    Peninsular Malaysia between 1995 and 2007

    142

    Figure 5.9 Comparison of the results between LPBEPI (N:

    O=47,128; A=47,162), LPBET (N: O=3,034, Asia

    1=3043) and NSP tests performed on samples

    submitted by the states of Peninsular Malaysia to the

    national FMD laboratory, Kota Bharu Kelantan, 1995-

    2007

    148

    Figure 6.1 Scenario tree for the risk assessment model of FMD for

    Peninsular Malaysia resulting from the importation of

    live cattle (Description of the parameters are displayed

    in Table 6.1)

    181

    Figure 6.2 Frequency (A) and cumulative probability (B)

    distribution for FMD prevalence in consignments of

    live cattle in a year for movement into Peninsular

    Malaysia

    193

  • xxiii

    Figure 6.3 Frequency (A) and cumulative probability (B)

    distribution for the total number of clinically infected

    cattle removed (Nclinical) from the consignments each

    year

    194

    Figure 6.4 Frequency (A) and cumulative probability (B)

    distribution for the total number of apparently healthy

    live cattle that were accepted (Nhealthy) in a year into

    Peninsular Malaysia

    195

    Figure 6.5 Frequency distribution of the total number of FMD-

    infected cattle (“s”) that entered Peninsular Malaysia

    each year

    196

    Figure 6.6 Frequency (A) and cumulative probability (B)

    distribution of the total number of FMD-infected cattle

    were test negative and survived infection (“s” new) that

    entered Peninsular Malaysia each year

    197

    Figure 6.7 Frequency (A) and cumulative probability (B)

    distribution of the total number of undetected FMD-

    infected cattle that survived infection and were

    infectious (Ninf) that were accepted for entry into

    Peninsular Malaysia per year

    198

    Figure 6.8 Frequency (A) and cumulative probability (B)

    distribution of the total number of undetected FMD-

    infected cattle that survived infection and were

    infectious and established effective contact (Nfinal) in

    the new herd in Peninsular Malaysia

    199

  • xxiv

    Figure 6.9 Frequency (A) and cumulative probability (B)

    distribution of the total number of new infections of

    FMD in Peninsular Malaysia following effective

    contact between infected and infectious imported cattle

    and susceptible animals (Nnewinf)

    200

    Figure 6.10 A scatter plot of the relationship between the number of

    imported cattle that are able to establish effective

    contact, Nfinal, and the number of infectious cattle,

    Ninf

    201

    Figure 6.11 A scatter plot of the relationship between the number of

    imported cattle that were able to establish effective

    contact, Nfinal and the number of infectious cattle,

    Ninf, when farm quarantine was not applied

    203

  • xxv

    List of abbreviations

    AB-CRC Australian Biosecurity Cooperative Research Centre

    ACI Average cumulative incidence

    ANOVA Analysis of variance

    AP Apparent prevalence

    CI Confidence intervals

    DLD Department of Livestock Development

    DVS Department of Veterinary Services of Malaysia

    ELISA Enzyme-linked immunosorbent assay

    EpiNet Epidemiological Network

    FMD Foot and mouth disease

    FMDV Foot and mouth disease virus

    FN False negative

    FP False positive

    HPAI Highly pathogenic avian influenza

    LPBE Liquid phase blocking ELISA

    LPBEPI Liquid phase blocking ELISA percentage inhibition

    LPBET Liquid phase blocking ELISA titre

    Max Maximum

    ME-SA Middle East-South Asia

    Min Minimum

    MOU Memorandum of Understanding

    MTM Malaysia-Thailand-Myanmar

    NPV Negative predictive value

    NSP Non-structural protein

  • xxvi

    OIE Office Internationale des Epizooties

    OR Odds ratio

    PCR Polymerase-chain reaction

    PDR Lao People’s Democratic Republic

    PPV Positive predictive value

    RCU Regional Coordinating Unit

    RNA Ribonucleic acid

    SAT South African Territories

    Se Sensitivity

    SE Standard error

    SEA Southeast Asia

    SEAFMD Southeast Asia Foot and Mouth Disease

    SEACFMD Southeast Asia China Foot and Mouth Disease

    SD Standard deviation

    Sp Specificity

    SPSS Statistical Software for Social Sciences

    SVD Swine Vesicular Disease

    TCID50 Tissue culture infective dose 50

    UK United Kingdom

    USD United States Dollar

    VNT Virus neutralization test

    VP Viral protein

    WRL World Reference Laboratory for FMD

    χ2 Chi-squared

  • 1

    Chapter 1

    Introduction

    1.1 Background to the study

    Despite the advances in the understanding of viral pathogenesis and the

    development of vaccine technology, foot and mouth disease (FMD) remains a major

    threat to the world economy (Kitching, 2005). The disease is endemic in many areas

    of Africa, Asia and South America, and the infection has a remarkable ability to spread

    over long distances and to cause epidemics in previously free areas, as was seen in the

    2001 epidemic in the United Kingdom (UK), France and the Netherlands and in the

    outbreaks in South Korea and Japan in 2000 (Knowles et al., 2001b).

    The impact of FMD in affected countries can be significant. In endemic

    countries FMD causes loss of productivity in adult animals and high mortality in

    young stock, however the major impact of the disease is the constraint on the

    international trade of livestock and animal products (Geering et al., 1995). Countries

    previously free of the disease suffer trade restrictions and severe economic

    consequences when outbreaks occur (Samuel and Knowles, 2001a). Estimates of the

    cost of disease outbreaks have ranged from $US30 million to $US29.1 billion (Vosloo

    et al., 1992; Thomson, 1995; Yang et al., 1999; Paarlberg et al., 2002; Kao, 2003).

    Foot and mouth disease is a highly contagious viral disease of cloven-hoofed

    domesticated animals, such as buffalo, cattle, goats, sheep and pigs (Alexandersen et

    al., 2002a; Kitching et al., 2005), and wild animals such as kudu (Tragelaphus

    strepsiceros), impala (Aepyceros melampus), warthog (Phacochoerus africanus),

    bush pigs (Potamochoerus larvatus) (Hedger et al., 1972) , eland (Taurotragus spp.),

    waterbuck (Kobus ellipsiprymnus), sable (Martes zibellina) (Anderson et al., 1993),

    gazelles (Gazella spp.) (Nyamsuren et al., 2006), wild deer (family Cervidae)

  • 2

    (Kitching et al., 2005), and feral pigs (family Suidae) (Doran and Laffan, 2005; Ward

    et al., 2007).

    Foot and mouth disease is caused by a virus belonging to the Apthovirus genus

    of the family Picornaviridae (Belsham, 2005; Domingo et al., 2005). Seven serotypes

    of FMD virus (FMDV) (A, O, C, Southern African Territories (SAT) 1, SAT 2, SAT

    3, and Asia 1) have been classified (Brown, 2003). There is no difference in the clinical

    disease induced by each serotype (Alexandersen and Mowat, 2005; Kitching, 2005).

    To date, more than 60 subtypes have been reported, with between 3 and 31 subtypes

    per serotype (Knowles and Samuel, 2003).

    The mode of disease transmission is usually associated with the movement of

    infected animals and their contact with susceptible animals (Mahy, 2005). Animals

    shed virus in all their secretions and also in exhaled air (Alexandersen and Mowat,

    2005). Other methods of disease spread include the aerosol route and mechanically by

    veterinarians, motor vehicles and other fomites (Mahy, 2005). Cattle, sheep, goats and

    other ruminant species that have recovered from FMD, and those that have been

    vaccinated against FMD and subsequently exposed to live virus prior to effective

    immunity is developed, may become carriers of the virus (Salt, 2004; Doel, 2005).

    The characteristic signs of FMD in different livestock species may include fever

    and vesicles with subsequent erosions in the mouth, nares, muzzle, feet and teats

    (Mahy, 2005). The stomatitis causes excess salivation, lip smacking and cessation of

    eating, and rapid weight loss; whereas foot lesions are accompanied by acute lameness

    and reluctance to move (Donaldson, 2004). The average mortality from FMD is about

    1%, however the morbidity is close to 100% (Mahy, 2005). The disease is milder in

    pigs, sheep and goats although abortions may occur, and these species act as reservoirs

    from which the disease may spread to cattle (Mahy, 2005).

  • 3

    The most conclusive evidence of infection is isolation of live FMD virus,

    however sometimes this is not possible (Kitching, 2005). Epithelial samples, whole

    and clotted blood, probang samples, and samples of heart muscle from dead young

    animals from suspected FMD cases may be used for virus isolation (Kitching, 2005).

    Antigen detection tests, including Enzyme Linked Immunosorbent Assays (ELISA)

    (Morioka et al., 2009; Longjam et al., 2011) and polymerase chain reaction (PCR)

    (Reid et al., 2002; Longjam et al., 2011), can be used to serotype the virus. By

    sequencing the viral genome the origin of the circulating virus may be determined

    (Kitching et al., 1989b). The gold standard test for detecting antibodies to viral

    antigens is the virus neutralization test (VNT)

    (http://www.oie.int/fileadmin/Home/eng/Health_standards/tahm/2.01.05_FMD.pdf,

    Accessed 28 March 2013). The VNT has been replaced for routine serology by the

    liquid-phase blocking ELISA (LPBE) and subsequently by the solid phase competition

    ELISA (SPCE)

    (http://www.oie.int/fileadmin/Home/eng/Health_standards/tahm/2.01.05_FMD.pdf,

    Accessed 28 March 2013). Several diagnostic tests developed to differentiate

    antibodies induced by natural infection from those stimulated by vaccination are based

    on the absence of non-structural proteins (NSP) (Boyle et al., 2004; Clavijo et al.,

    2004). A multiplex bead immunoassay that uses a single sample taken from

    experimentally infected and vaccinated cattle for the detection of NSP has also been

    developed (Clavijo et al., 2006).

    Foot and mouth disease is a major constraint to international trade of livestock

    and animal products (Alexandersen and Mowat, 2005). Control of the disease in

    countries which are FMD-free without vaccination includes exclusion and slaughter

    policies. However, emergency “suppressive” vaccination is now an acceptable

    http://www.oie.int/fileadmin/Home/eng/Health_standards/tahm/2.01.05_FMD.pdfhttp://www.oie.int/fileadmin/Home/eng/Health_standards/tahm/2.01.05_FMD.pdf

  • 4

    alternative (Bouma et al., 2003; Backer et. al, 2012; Porphyre et al., 2013). A ban on

    the movement of all livestock, culling of infected herds, pre-emptive culling of

    livestock within an area of one km around an outbreak, zoo-sanitary measures and

    screening activities have been used to control outbreaks (Bouma et al., 2003). In

    Southeast Asian (SEA) countries, where FMD is endemic, control approaches involve

    regulatory and quarantine measures, management of animal movements and

    vaccination programs (Gleeson, 2002). The identification of market chain of livestock

    and critical points within those market chains in Greater Mekong Sub-Region

    countries were indicated for intervention measures to reduce the transmission of FMD

    targeting the disease at source such as storage depots, transaction areas, slaughter

    houses, areas with high numbers of livestock traders, livestock entry points at border

    areas and livestock markets (Cocks, 2009b).

    A more advanced approach in FMD control using mathematical and statistical

    models has been developed. Disease modelling has been used as a tool to study

    diseases such as FMD to better understand potential disease spread and control under

    different conditions (Garner and Beckett, 2005). Outputs from such models are a

    valuable resource to assist with policy development and disease management (Garner

    and Beckett, 2005). Accurate epidemiological models can be useful tools for

    determining relevant control policies for different scenarios and, conversely,

    inaccurate models may interfere with effective disease control (Kitching et al., 2005).

    Few studies have been conducted on FMD in Peninsular Malaysia. Regular

    sporadic outbreaks of FMD since 1992 have been reported (Palanisamy et al., 2000)

    but they were restricted to the northern states of Peninsular Malaysia near the Thai

    border (Idris, 1995). However from 2000 outbreaks have occurred throughout the

    peninsula (Rozanah, 2003). The illegal importation of cattle from FMD-infected areas

  • 5

    in Thailand into Malaysia for breeding and slaughter was believed to be the source of

    these outbreaks (Ghan, 1993). Disease subsequently spread through: direct contact

    between infected and susceptible livestock in common grazing areas; holding of cattle

    in slaughter areas; and unauthorised inter-district movements (Ghan, 1993). A study

    on cross-border movement pathways of large ruminants in SEA recognized that

    Peninsular Malaysia as one of the main markets with Central Myanmar as an important

    source and Thailand as a transit country (Cocks et al., 2009a) driven by high demand

    and price. Thus, this fact indicates that transboundary livestock movement could be a

    major risk factor for FMD in Peninsular Malaysia. Sabah and Sarawak, located on

    Borneo Island, have never recorded FMD and in May 2004 the OIE recognized Sabah

    and Sarawak as FMD-free without vaccination (Edwards, 2004).

    Before adequate laboratory diagnostic facilities existed in Malaysia, samples

    were submitted to the World Reference Laboratory (WRL), Pirbright, UK to confirm

    the clinical diagnosis (Ghan, 1993). Nowadays, the national FMD laboratory in Kota

    Bahru, Kelantan is the reference laboratory for the country and is capable of

    conducting LPBE to confirm the serotypes involved in outbreaks and NSP-ELISA

    tests to differentiate naturally infected from vaccinated animals. Polymerase-chain-

    reaction tests are also being used for antigen detection from epithelial tissue samples

    (J. Senawi, Personal Communication, 2013). Some samples are still sent to the WRL

    for subtyping and genotyping (MHM Naheed, 2012,

    www.oie.int/doc/ged/D11971.pdf, Accessed on 28 March 2013).

    Control measures adopted in Malaysia include restriction of animal movements,

    vaccination and supervised slaughter. Clinically infected animals are destroyed (Ghan,

    1993) and mass vaccination targeting ruminants in the high-risk areas has been carried

    out (Anum, 2003). Recently, the control measures for FMD adopted have included

    http://www.oie.int/doc/ged/D11971.pdf

  • 6

    import control, management of animal movements, strategic vaccination, legislation,

    disease investigation and outbreak index management, surveillance, public awareness

    campaigns and disease reporting (www.oie.int/doc/ged/D11971.pdf, Accessed on 28

    March 2013).

    In late 1997, SEAFMD 2020 was established by the OIE in Bangkok, Thailand.

    This plan provided a roadmap for FMD freedom with vaccination by 2020 in Southeast

    Asia (OIE-SEAFMD, 2007). Economic studies to assess the SEAFMD control and

    eradication plan in Thailand, Laos and the Philippines indicated a positive financial

    effect of eradicating the disease from these countries (Perry et al., 1999; Perry et al.,

    2002; Randolph et al., 2002). The Malaysia-Thailand-Myanmar (MTM) Peninsular

    Campaign for FMD was established on the 6th November 2003. This program was

    designed to progressively establish a free zone on the MTM Peninsular

    (http://www.seafmd-

    rcu.oie.int/documents/SEAFMD%202020%20WEB%20Version.pdf, accessed on 28

    March 2013). Recent report on dynamic cross-border movement of livestock within

    the region further emphasised the need for regional programs with strong cooperation

    between neighbouring countries (Cocks, 2014).

    In conclusion, the successful control and eradication of FMD remains a

    challenge for infected countries. In Malaysia, Peninsular Malaysia is infected,

    although little research has been conducted on the epidemiology of FMD in this region

    of the country. The research reported in this thesis was undertaken to address this

    knowledge deficiency.

    1.2 Aims and objectives of this study

    It is vital for Malaysia to have an effective programme to be able to control and

    eradicate FMD efficiently and successfully. The current control strategies are thought

    http://www.oie.int/doc/ged/D11971.pdfhttp://www.seafmd-rcu.oie.int/documents/SEAFMD%202020%20WEB%20Version.pdfhttp://www.seafmd-rcu.oie.int/documents/SEAFMD%202020%20WEB%20Version.pdf

  • 7

    to be inadequate. Furthermore, there is little published information on the

    epidemiology of FMD in Malaysia. Therefore, the present study was carried out with

    the aims to provide a comprehensive report on the epidemiology of FMD in Malaysia,

    particularly Peninsular Malaysia, and to evaluate the risk of FMD entering and

    spreading in the country through a number of pathways. In-depth knowledge and

    understanding of the epidemiology and the risk of FMD in Peninsular Malaysia is

    needed to establish more effective disease control and prevention programs.

    The specific objectives of the study reported in this thesis were to:

    1. Describe the occurrence of FMD outbreaks based on historical reports of

    outbreaks between 1986 and 2005.

    2. Describe the outbreaks of FMD in Peninsular Malaysia between 2000 and 2011.

    3. Identify the serotypes of FMDV involved in outbreaks.

    4. Determine the seroprevalence of antibodies against FMDV.

    5. Describe the distribution of FMD with regards to host, time and location.

    6. Evaluate the risk of the introduction and spread of FMD through the importation

    of live cattle from Thailand.

    Ultimately, the findings from this research may be used to generate

    recommendations for the MTM Tri-state Commission and Zoning Working Groups

    for the FMD Eradication Campaign.

    1.3 Structure of the thesis

    There are seven chapters in this thesis. Chapter 1 introduces the research

    problems, and outlines the aims and scope of the study and its limitations. In Chapter

    2 the literature is reviewed and general and specific topics relevant to the virus, the

    disease, its distribution, economic losses, epidemiology, diagnosis, control and

    prevention, and finally, risk assessment are discussed. In Chapter 3 historical reports

  • 8

    of FMD in Malaysia are analysed and discussed. In Chapter 4 the findings from a

    retrospective study of FMD in Peninsular Malaysia are discussed. This involved

    analysing data from field outbreaks from 2000 to 2011. These data were obtained from

    the Disease Control Unit, Department of Veterinary Services (DVS, 2008)

    Headquarters at Putrajaya, Malaysia, and from the website of the OIE Regional

    Coordinating Unit (RCU) Bangkok for SEAFMD Control (http://www.seafmd-

    rcu.org). In Chapter 5 existing data from the national FMD laboratory Kota Bharu,

    Kelantan, Malaysia are analysed and discussed. This is followed by Chapter 6 which

    reports on a quantitative risk assessment for the introduction and spread of FMD in

    Peninsular Malaysia through the importation of live cattle from Thailand. To assess

    the risk, scenario trees were developed to determine risk pathways. Expert opinions

    were obtained and literature searched to estimate the probabilities used in the models.

    Stochastic models were developed and simulations were run using the software

    program PopTools. In Chapter 7 the whole study, together with the research

    constraints, recommendations, suggestions on future studies on FMD and finally the

    conclusions, are discussed.

    In the following chapter the literature relevant to the research topic and

    objectives of the present study are reviewed.

    http://www.seafmd-rcu.org/http://www.seafmd-rcu.org/

  • 9

    Chapter 2

    Literature Review

    2.1 Foot-and-mouth disease

    Foot and mouth disease is an acute vesicular disease of cloven-hoofed animals

    such as cattle, pigs, sheep, goats, buffalo (Alexandersen et al., 2002a; Kitching et al.,

    2005), camels (Wernery and Kaaden, 2004; Shiilegdamba et al., 2008) and various

    wildlife species such as African buffalo (Syncerus caffer) (Bastos et al., 2001; Vosloo

    et al., 2006; Vosloo et al., 2007), antelope (Hargreaves et al., 2004), kudu, bush pigs,

    warthog (Hedger, 1972), impala (Aepyceros melampus) (Bastos et al., 2001; Vosloo

    et al., 2002; Hargreaves et al., 2004; Vosloo et al., 2006), eland (Taurotragus oryx)

    (Paling et al., 1979; Ferris et al., 1989; Anderson et al., 1993), waterbuck (Anderson

    et al., 1993), sable (Ferris et al., 1989; Anderson et al., 1993), gazelles (Shimshony et

    al., 1986; Shimshony, 1988; Nyamsuren et al., 2006), wild deer (Kitching et al., 2005;

    Ward et al., 2007), and feral pigs (Doran and Laffan, 2005; Ward et al., 2007). It is

    highly contagious and there is rapid onset of disease. The incubation period can be as

    short as 24 hours or up to 14 days, depending on the strain and dose of virus, route of

    infection, species involved and the husbandry conditions (Gailiunas and Cottral, 1966;

    Alexandersen et al., 2003c). The characteristics of FMD include an acute febrile

    reaction and vesicles formation in and around the mouth and on the feet (Alexandersen

    et al., 2003c). Animals may show lameness, arched back, reluctance to walk or stand,

    and inappetance (Alexandersen et al., 2003c). The acute phase lasts for approximately

    7 to 10 days (Grubman and Baxt, 2004). An antibody mediated immune response

    results in clearance of the infection from most infected animals (Radostits et al., 2007).

  • 10

    2.2 Foot-and-mouth disease virus

    The first written description of FMD probably occurred in 1514, when

    Fracastorius described a similar disease of cattle in Italy. Almost 400 years later, in

    1897, Loeffler and Frosch demonstrated that a filterable agent caused FMD.

    The aetiological agent of FMD is a virus belonging to Picornaviridae family,

    genus Apthovirus. This virus consists of a single-stranded, plus-sense ribonucleic acid

    (RNA) genome of approximately 8,500 bases surrounded by four structural proteins

    to form an icosahedral capsid (Rueckert, 1996) with no envelope, and is approximately

    22-30 nm in diameter (Domingo et al., 2002). The virus is acid-labile and is unstable

    below pH 6.8. The genomic RNA contains a variable length of 100-400 nucleotides.

    The virus invades host cells and reprograms the cell to produce more virus. The

    FMDV RNA molecule codes for 12 viral proteins: L, 1A, 1B, 1C, 1D, 2A, 2B, 2C,

    3A, 3B, 3C and 3D. Proteins 1A (VP4), 1B (VP2), 1C (VP3) and 1D (VP1) make up

    the protein shell (capsular or structural proteins) (Knowles and Samuel, 2003). Other

    viral proteins are involved in replicatory functions and influencing host cell

    functionality and are termed non-structural proteins (NSPs). Purification of structural

    components of the virus should separate NSPs from the structural proteins. It is

    common for traces of NSPs to be retained, particularly the protein 3D (Knowles and

    Samuel, 2003). This is important for diagnostic purposes because it differentiates

    between vaccinated and naturally infected animals. In naturally infected animals, the

    NSP ELISA tests will detect the antibodies to the non-structural components from the

    virus, thus giving positive results. In vaccinated animals, because of no viral

    replication, they develop antibodies to the structural proteins of the virus present in

    the viral capsid and there is no expression of the NSPs and the animal will not develop

  • 11

    antibodies to these proteins (Kitching, 2002b). Therefore, the NSP test will give

    negative results in vaccinated animals.

    There are seven immunologically distinct serotypes of FMDV namely A, O, C,

    Asia 1, Southern African Territories (SAT)1, SAT2, and SAT3 (Samuel and Knowles,

    2001a). Serotype O was named for Oise in France and type A for Allemagne

    (Germany), type C as an additional type in Germany; whereas SAT1, SAT2, and SAT3

    were isolated from South African outbreaks (Bachrach, 1968; Mahy, 2005). There is

    considerable antigenic variability within the seven serotypes. Over 60 subtypes have

    been described and new subtypes arise continuously as a result of a high mutation rate

    and possibly RNA recombination (Domingo et al., 2002; Knowles and Samuel, 2003).

    Non-structural proteins are more highly conserved since these proteins are essential

    for replication and changes are more likely to be lethal. An animal that is immune to

    one serotype is still susceptible to infection with another serotype and animals immune

    to one strain (subtype) may still be susceptible to infection with another strain

    (Knowles and Samuel, 2003). The antigenic diversity and lack of cross-protection

    means that a number of vaccine strains are required even within one serotype. It is

    necessary to monitor the appearance of new strains consistently to ensure available

    vaccines are protective. Antigenic variation within a serotype can be such that vaccines

    must be carefully matched to outbreak strains to ensure efficacy (Samuel and Knowles,

    2001a). These characteristics have made laboratory diagnosis and control of FMD

    more challenging than many other viral diseases.

    Foot and mouth disease viruses are further divided into genotypes based on

    comparison of VP1 sequence data. By genotyping, it has been possible to group many

    FMDVs based on their geographic origin and these are referred to as “topotypes”.

    Based on nucleotide sequence analysis, the seven serotypes of FMDV have been

  • 12

    shown to be clustered into distinct genetic lineages with approximately 30-50%

    differences in the VP1 genes (Knowles and Samuel, 2003). Using these techniques,

    they have also been able to unequivocally show the pandemic spread of a FMDV type

    O pandemic strain (also called PanAsia strain) through the whole of Asia, Middle East,

    Africa and Europe (Knowles et al., 2005). The virus that caused the UK outbreak was

    first detected in 1990 in India and rapidly spread both eastward and westward. In

    another comprehensive study of FMD type O strains it was demonstrated that strains

    could be grouped into eight topotypes based on nucleotide differences of up to 15%.

    In the 1997 Taiwan outbreaks in pigs, type O Cathay topotype strain was shown to be

    very virulent for pigs but lacked virulence in cattle due to an altered 3A protein

    (Knowles et al., 2001a). In the case of the SAT serotypes, the level for inclusion within

    a topotype was raised to 20% since the VP1-coding sequence of these viruses appears

    to be more inherently variable than other serotypes (Samuel and Knowles, 2001a). An

    Argentinean study analysed complete or partial VP1 sequences of 31 FMDV

    belonging to serotypes A, O and C to determine the genetic relatedness of field strains

    of FMDV that had circulated in Argentina between 1961 and 1994. It was found that

    FMD type A strains showed the highest genetic heterogeneity and could be divided

    into five lineages with a sequence divergence of 0.9–18.5% between strains. Most of

    the FMD type O viruses were grouped into two clusters (within cluster sequence

    divergence ranging from 0.2 to 6.0%), and FMD type C viruses were grouped into two

    clusters with a 13.4% nucleotide sequence divergence between each cluster (Konig et

    al., 2001). An increased understanding of how FMDV strains move between

    geographical regions will play a pivotal role in the development of future disease

    control strategies.

  • 13

    2.3 Host range and pathogenesis

    All cloven-hoofed animals, including cattle, sheep, goats, buffaloes and wild

    ruminants and pigs, can be affected by FMD (Kitching and Hughes, 2002;

    Alexandersen and Mowat, 2005). Under field conditions susceptible animals may be

    infected by FMDV directly or by indirect contact with infected animals or an infected

    environment. When animals are close together the transfer of airborne droplets and

    droplet nuclei (aerosols) from the breath of infected animals to the respiratory tract of

    recipient animals is probably the most common form of transmission. The virus also

    may gain entry into susceptible hosts through damaged integument. Long-range

    airborne transmission of virus is uncommon but important under certain conditions.

    Sometimes, other factors, together with route of infection, are important factors for

    FMD transmission including animal species, the number of the excreting and inhaling

    animals and favourable topographical and meteorological conditions. The

    pathogenesis of FMD has been studied mainly in cattle and pigs (Thomson et al.,

    2003). Infection in pigs is usually through the oral route (Kitching and Alexandersen,

    2002). Infection in other susceptible animals usually occurs by inhalation and the

    initial site for virus replication is believed to be the lung bronchioles (Brown et al.,

    1996) and mainly in the pharynx for cattle (Geering et al., 1995). The virus then

    spreads via the bloodstream to epithelial cells. In infected animals FMDV is

    disseminated to many epidermal sites, but lesions only develop in areas subject to

    mechanical trauma or physical stress (Gailiunas and Cottral, 1966; Thomson et al.,

    2003). Vesicles develop at multiple sites (mostly feet and tongue), and are usually

    preceded by fever. The incubation period is generally between two to eight days

    (sometimes 1 - 14 days), depending on the infectious dose, the strain of virus, route of

    infection and mechanism of infection (Donaldson, 2004).

  • 14

    2.4 Clinical signs

    In Bovidae, the first indication of the disease is fever (often above 40◦C), severe

    depression, excessive salivation, lameness, inappetance and decreased milk

    production (Kitching, 2002a; Donaldson, 2004; Klein, 2009). This is followed within

    a day or so by the development of vesicles, the predilection sites for which are the

    tongue, lips, gums, dental pad, interdigital skin of the feet, coronary bands, bulbs of

    the heels and teats (Kitching, 2002a). Occasionally, vesicles appear inside the nostrils

    or on the muzzle or vulva (Kitching, 2002a). The lesions begin as small hyperaemic

    foci at one or more of these sites. These very quickly progress to vesicles, which are

    initially 1-2 cm in diameter but rapidly enlarge and coalesce (Kitching, 2002a). They

    are filled with a clear straw-coloured fluid and their overlying epithelium is blanched

    (Kitching, 2002a). The vesicles rupture within 24 hours to leave raw, painful ulcers

    surrounded by ragged tags of necrotic epithelium. In the mouth, vesicles are

    particularly prominent on the tongue, dental pad and buccal mucosa (Kitching, 2002a).

    In severe cases, most of the mucosa of the dorsal surface of the tongue may slough.

    The painful stomatitis associated with intact and freshly ruptured vesicles leads to

    excess salivation, lip smacking and animals stopping eating (Kitching, 2002a). There

    is rapid loss of body weight (Kitching, 2002a). In uncomplicated cases, mouth lesions

    heal quite rapidly within a 10-day period and eating may resume within a few days of

    rupture of the vesicles (Kitching, 2002a). Foot lesions are accompanied by acute

    lameness and reluctance to move (Kitching, 2002a). Secondary infections may lead to

    severe involvement of the deeper structures of the foot (Kitching, 2002a). Teat lesions

    may also be complicated by secondary mastitis (Kitching, 2002a). Although there is a

    high morbidity rate of up to 100% (Spickler et al., 2010), the mortality rate in adult

    animals is generally less than 5% (Geering and Lubroth, 2002; Spickler et al., 2010),

  • 15

    although it can be above 90% in young animals (Spickler et al., 2010). Young animals

    may die due to myocardial necrosis (Gulbahar et al., 2007). There is often a prolonged

    convalescence with significant reduction in milk production and weight loss, and

    reduced draught power (Gulbahar et al., 2007). Long-term sequelae may include foot

    deformities and permanent damage to the udder. Occasionally, endocrine gland

    damage leads to a chronic ‘panting’ syndrome characterised by dyspnoea and ill-thrift

    (Ghanem and Abdel-Hamid, 2010). Infection of very young calves may cause sudden

    death, without vesicular lesions, as a result of cardiac lesions and this is associated

    with high mortality (Kitching and Alexandersen, 2002; Kitching and Hughes, 2002;

    Donaldson, 2004). The clinical signs of FMD in native breeds of cattle in endemic

    areas are usually milder than those described above (Geering et al., 1995; Kitching,

    2002a; Kitching et al., 2005).

    In pigs, the early signs include lameness, fever, depression and anorexia

    (Donaldson, 2004). The most pronounced vesicles are on the feet. These vesicles cause

    acute lameness, pain, recumbency and reluctance to move, particularly if the pigs are

    housed on a hard floor (Donaldson, 2004). However, the disease is sometimes difficult

    to detect when affected pigs are housed on soft bedding (Donaldson, 2004). Vesicles

    may occur on the coronets, interdigital skin, or bulbs of the heel (Donaldson, 2004).

    Vesicles that encircle the coronet may lead to separation of the keratinised layers of

    the hoof from the corium (Donaldson, 2004). In severe cases there may be sloughing

    of the hoof. Otherwise, a line of separation between old and new horn moves steadily

    down the hoof at a rate of about 1 mm a week, starting a week after rupture of the

    coronary band vesicles (Donaldson, 2004). The age of FMD lesions in pigs can often

    be estimated this way (Donaldson, 2004). Vesicles may occur on the snout; relatively

    uncommon on tongue in pigs, and when they occur are small and heal rapidly

  • 16

    (Donaldson, 2004). Sows often develop vesicles on their teats and abortion

    (Donaldson, 2004). There may be high mortality in suckling piglets, with sudden

    deaths but no vesicular lesions and in some herds this is the first overt sign of the

    disease (Geering et al., 1995; Donaldson, 2004).

    In sheep and goats, the first signs are often a severe lameness accompanied with

    depression, anorexia and pyrexia or sudden death in lambs or kids (Donaldson, 2004).

    The mortality rate may be as high as 90% (Geering et al., 1995; Kitching and Hughes,

    2002) due to multifocal necrosis of the myocardium (Donaldson, 2004). Foot lesions

    are most evident on the coronary bands and interdigital skin (Donaldson, 2004).

    Lameness is often the only overt sign of the disease in a flock. Foot lesions in sheep

    are particularly prone to secondary bacterial infections, including footrot (Donaldson,

    2004). Mouth lesions are not prominent in these animals (Donaldson, 2004). Vesicles

    are more likely to occur on the dental pad and the posterior portion of the dorsal surface

    of the tongue, small size and heal rapidly (Donaldson, 2004). Clinical disease is similar

    in sheep to other species but up to 25% of infected sheep may fail to develop lesions

    and only one lesion may form in an additional 20% of animals (Donaldson, 2004). The

    disease in sheep and goats is generally mild and can be difficult to distinguish from

    other common conditions (Kitching and Hughes, 2002; Grubman and Baxt, 2004).

    In captive African buffalo calves, the index case in an FMD outbreak due to

    SAT 1 occurred six months after the calves arrived at the bomas (Vosloo et al., 2007).

    The authors described a case of a 30-month-old heifer with foamy mouth but no

    drooling of saliva, anorexia, inappetance and soaked her mouth in the water trough.

    Severe lesions on the dorsal surface of the tongue and hard palate developed two days

    later and later sloughed off. Another five animals were also found to have lesions on

    the tongue, buccal mucosa and, in one case, on the hard palate. Some lesions were

  • 17

    large (70 mm x 30 mm), foul smelling and the affected epithelium was brittle and

    came off in granules. The calves also showed depression, pyrexia and moderate

    anorexia. Within a week, ulcers/erosions formed with rounded epithelial edges and a

    clear pink floor. After two weeks the tongue lesions were visible as pale, weakly

    circumscribed areas with poorly developed papillae. Weight loss and lymphopenia

    were also observed. No foot lesions occurred in any of the animals (Vosloo et al.,

    2007).

    2.5 Subclinical and persistent infections

    There are two types of inapparent infections of FMDV (Klein, 2009). Firstly,

    those animals that become infected and spread the virus without showing clinical signs

    and secondly, those animals in which the virus persists after animals have recovered

    from displaying clinical signs of disease (Sutmoller and Casas, 2002).

    Persistent infection with FMDV in ruminants, so-called carriers, are defined as

    those being virus positive for a minimum of 28 days (Sutmoller et al., 1968), both in

    ruminants recovered from the acute infection and in vaccinated ruminants if they are

    subsequently exposed to infectious virus (Alexandersen and Mowat, 2005). The site

    of viral persistence is probably the pharynx. Virus can be routinely recovered from

    cells and secretions collected from the pharynx and anterior oesophagus using

    ‘probang cups’ (Sutmoller and Gaggero, 1965). Another study reported that virus

    persists in the basal layer cells of the pharyngeal epithelium, mainly the dorsal soft

    palate (Zhang and Kitching, 2001). Other workers reported specific genetic sequences

    of FMDV in multiple sites but not in isolates from the pharyngeal region of cattle up

    to 2 years after infection (Bergmann et al., 1996). In cattle, the maximum duration of

    the carrier state is 3.5 years; in sheep, 9 months; in goat, 4 months; in African buffalo,

    5 years; in water buffalo, it is unknown; and pigs are not considered carriers because

  • 18

    persistence has not been demonstrated (Alexandersen et al., 2002b). The prevalence

    of carrier ruminants was reported to be 15-20% , over 50% (Kitching, 2002b) and in

    African buffalo, 50-70% (Condy et al., 1985). However, a Kenyan study found very

    few carrier sheep and goats (Anderson et al., 1976). Field transmission from carriers

    has, so far, only been shown from African buffaloes to cattle and impala (Dawe et al.,

    1994; Bastos et al., 2000). However, experimental studies have shown saliva, obtained

    from carrier animals, that was injected into cattle and pigs induced infection

    (Alexandersen et al., 2002b). The number of carrier animals in a population depends

    on the species, the individual, the incidence of infection and the herd immune status

    (vaccinated or not) (Alexandersen et al., 2002b). Virus challenge and the genetics of

    the host could also influence the development and duration of persistent infection

    (Salt, 2004).

    Subclinically infected animals may be highly contagious (Gibbens et al., 2001).

    As occurred in the UK outbreak in 2007 due to a vaccine strain with a reduced

    virulence, only a few infected animals showed clinical signs (Klein, 2009). Subclinical

    infection can occur within vaccinated herds, with a high challenge of FMDV in

    animals with high immunity or a low challenge in animals with low vaccine titre

    (Yadin et al., 2007). It is possible that subclinically infected animals may play an

    important role in the maintenance of FMD in endemic countries (Kitching, 2005).

    2.6 Economic losses from outbreaks of foot-and-mouth disease (FMD)

    Foot and mouth disease is present in two-thirds of the 167 OIE member

    countries, where it creates severe economic problems and provides a reservoir of virus

    with the potential to spread into virus free areas (Clavijo et al., 2004). Economic losses

    from this disease can be severe due to loss of export markets, consumer fears

    (Paarlberg et al., 2002) and trade restrictions on live animals and livestock products

  • 19

    (Gleeson, 2002). It has been estimated that FMD would cost Australia $AUS3.5

    billion, mainly from the loss of export markets (Garner et al., 2002). The cost of

    disease control and restriction of trade had direct effects on the UK economy in the

    2001 outbreak (James and Rushton, 2002). In that outbreak FMD not only affected the

    agricultural industry but also impacted the tourism industry. It was reported that £3.1

    billion was lost due to losses in agriculture (compensation, disposal and clean-up) and

    food chain (abattoir, auction markets, processors). Meanwhile, survey data of the

    tourism industry revealed the loss was between £2.7-3.2 billion as a result of reduced

    number of visitors to the countryside (Thompson et al., 2002). The financial cost of

    the FMD epidemic in Taiwan was estimated at US$378.6 million, including

    indemnities, vaccines, carcase disposal plus environmental protection, miscellaneous

    expenses and loss of market value. However when losses arising from the ban on

    exports of pork to Japan were included the total economic cost to Taiwan's pig industry

    was approximately US$1.6 billion (Yang et al., 1999).

    The economic effects of FMD have been summarised by James and Rushton,

    (2002). Losses were from production losses in dairy and pig kept intensively, high cost

    of disease control activities (by stamping-out or vaccination, prevention and

    emergency preparedness in FMD-free countries) and barrier to international trade of

    which markets with highest prices for livestock and products.

    The management of FMD epidemics in France was evaluated through a

    simulation model using epidemiological and economic data (Mahul and Durand,

    2000). The strategy of stamping out infected herds and dangerous in-contact herds was

    found effective in reducing the economic consequences of an FMD epidemic.

    Furthermore, the importance of reducing the period of the import bans for livestock

    product could also avoid further losses (Mahul and Durand, 2000).

  • 20

    Foot and mouth disease is considered an obstacle for successful access to

    domestic and export markets for livestock and their products. The control of FMD

    may be used as a major development opportunity in a global environment. Previous

    authors have reported that controlling FMD may contribute to the growth of

    developing nations (Perry and Rich, 2007).

    2.7 Epidemiology of FMD

    2.7.1 Virus survival

    Foot and mouth disease virus is most stable at near neutral pH and is sensitive

    to mild acidity (Hyslop, 1970). Although temperatures above 50°C destroy most

    infectivity, a small proportion of virus particles in most populations are relatively

    resistant to heat and pH. Approximately 90% of virus is inactivated at a temperature

    of 4 to 61°C within 18 weeks to 30 seconds, and between 1 second to more than five

    weeks at a pH of 5 to 10 (Pharo, 2002). Generally the virus survives less than three

    months in the environment however in very cold climates survival up to six months is

    possible. The virus has been reported to survive on bran and hay for more than three

    months under laboratory conditions and can also survive in wool at 4°C for

    approximately two months and up to three months on fomites (Bartley et al., 2002).

    In aerosols, FMDV survives best when the relative humidity exceeds 70% with

    poor survival when it is below 55-60% (Sellers et al., 1971; Alexandersen et al.,

    2003c). An example of the danger of infectious aerosols occurred on the Isle of Wight

    where infection resulted from aerosol transmission over a distance of over 250 km

    from the source in Brittany, France (Mahy, 2005). Sunlight and ultraviolet radiation

    significantly affect the survival of FMDV in the environment (Donaldson and Ferris,

    1975).

  • 21

    Fresh faeces collected off the floor have been found to contain small quantities

    of virus and these can survive for up to 10 days in pig faeces (Parker, 1971) and at

    least 12 days in cattle (Parker, 1971; Bartley et al., 2002). Survival of virus in frozen

    or liquid manure was demonstrated to be longer than six months in winter (Cottral,

    1969). Bartley et al., (2002) reported that organic material protected the virus from

    drying and enhanced its survival on fomites.

    The virus has been shown to survive for up to 12 years in soil attached to a

    Wellington boot and at least a year in cell culture medium at 4°C (Mahy, 2005), up to

    20 weeks on hay or straw, up to 4 weeks on cow’s hair maintained at 18-20°C, up to

    14 days in dry faeces, up to 39 days in urine, and on soil for 3 days in summer and up

    to 28 days in autumn (Alexandersen et al., 2003c).

    In raw milk, virus is shed up to 33 hours before dairy cows show clinical signs

    of disease (Tomasula and Konstance, 2004). This feature is important in the

    epidemiology of disease transmission. Blood remains infective for 36 days and bone

    marrow for 96 days (Blackwell, 1980). The virus can survive for long periods in

    chilled pig lymph nodes (70 days) or in the bone marrow of pigs and cattle (42 and

    210 days, respectively) (Cottral, 1969). Virus persistence in meat and other animal

    products is enhanced when the pH remains 6.0 or above (Bartley et al., 2002). Studies

    on the survival of virus has also been undertaken in meat and offal (Henderson and

    Brooksby, 1948) and it has been shown to survive for up to 90 days in smoked meat

    (Panina et al., 1989) and up to 313 days in salted meat products (McKercher et al.,

    1987).

    In the pharyngeal mucosa of ruminants, FMDV may persist for a long time,

    however this is not the case with pigs (Moonen and Schrijver, 2000). In humans,

  • 22

    FMDV may also be carried in the nasal passages for 28 hours after exposure to infected

    animals (Spickler et al., 2010).

    2.7.2 Transmission

    The most common method of spread of FMDV is by contact between an infected

    and a susceptible animal (Kitching et al., 2005). Cattle and sheep are very susceptible

    to infection by the aerosol route requiring at least 10 Tissue Culture Infective Dose

    (TCID50). In contrast pigs are less susceptible to aerosol infection, requiring as much

    as 6000 TCID50 (Alexandersen et al., 2002a; Alexandersen et al., 2002c). Infection

    can occur either across damaged epithelium or orally (Kitching et al., 2005). Although

    less susceptible than ruminants, pigs can aerosolise up to 3000 times more virus per

    day than ruminants during acute stage of infection. Aerosol virus can potentially

    spread a considerable distance with appropriate weather conditions (Kitching et al.,

    2005) as indicated in the outbreaks in southern England in 1981 that originated from

    Brittany France (Donaldson et al., 1982). Gloster et al. (2005b) used epidemiological

    and meteorological data to reassess the likelihood of airborne spread of FMD at the

    start of the 1967-1968 epidemics. The findings confirmed that airborne virus was the

    most likely cause of the rapid early development of the disease up to 60 km from the

    source (Gloster et al., 2005b). The same was concluded for the 2001 UK epidemic

    after analysis of three epidemiological case studies. The distances for the airborne

    spread ranged from less than one km to 16 km. Six of the farms were over six km from

    the source and involved the passage of virus over the sea combined with

    meteorological conditions which strongly favoured airborne disease transmission

    (Gloster et al., 2005a).

    All meat and organs from infected animals will contain FMDV and the virus

    will survive if meat is frozen before rigor mortis. An outbreak of FMD would be likely

  • 23

    when the infected products are fed to a susceptible species (e.g. pigs) (Kitching et al.,

    2005). Inactivation of FMDV will result from exposure to high temperatures, drying

    or where pH is less than 6 or more than 10. Therefore, allowing carcase maturation at

    2ºC for 24 h will allow development of lactic acid that will kill any virus in the meat

    by reducing the pH to

  • 24

    refilling (Kitching et al., 2005). A similar observation was made during the 2001

    epidemic in the UK (Gibbens et al., 2001).

    Animal movements of all species, particularly as a result of intensive animal

    husbandry practices, are especially dangerous for the spread of FMDV (Sutmoller et

    al., 2003). Unauthorised activities, such as the importation of infected meat and

    feeding to pigs of non-heat treated swill and the unauthorised trans-boundary

    movement of animals, have resulted in the introduction of FMD into previously non-

    infected countries. Movement of sheep from the UK were responsible for the spread

    of virus to animals in Western France (Sutmoller et al., 2003). Sexual transmission in

    African buffalo has also been suspected to have occurred during an outbreak in the

    Kruger National Park, South Africa (Bastos et al., 1999; Vosloo et al., 2007).

    In two experimental studies to determine direct and indirect virus transmission

    among individually housed calves, it was found that none of the in-contact animals

    seroconverted. This highlighted that virus transmission did not occur among the

    individually housed calves (Bouma et al., 2004).

    2.7.3 Global distribution of FMD

    Some areas of the world, such as Australia, New Zealand, North America and

    parts of South America, are free from FMD, whereas it is endemic or occurs

    sporadically in many countries in Asia, Africa and Eastern Europe

    (http://www.oie.int/?id=246, accessed on 6 Feb 2014).

    The distributions of FMD serotypes are not uniform throughout the world

    (Rweyemamu et al., 2008). Six of the seven serotypes of FMD (O, A, C, SAT1, SAT2,

    and SAT3) have been detected in Africa, while animals in Asia have been infected

    with four serotypes (O, A, C, Asia 1), and animals from South America with only three

    http://www.oie.int/?id=246

  • 25

    (O, A, C). Periodically there have been incursions of SAT1 and SAT2 from Africa

    into the Middle East (Rweyemamu et al., 2008).

    Serotype O, with different distribution of topotypes, indicates epidemiological

    clustering in endemic areas (Rweyemamu et al., 2008). There are South American

    topotypes, Africa has five different topotypes of type O (East Africa1 and 2, West

    Africa, Middle East-South Asia, Unknown), and Asia also has several sublineages

    (Southeast Asia, Cathay, ME-SA, Indonesia1/Indonesia2). Of these, ME-SA is the

    dominant topotype, with the Pan-Asia strain originating in South Asia, and the Cathay

    and SEA topotypes are still present in the region. The movement of infected animals

    has been shown to be the most important factor in the spread of FMD within these

    endemic regions (Rweyemamu et al., 2008).

    In Europe almost all countries west of the Russian Federation and the Balkan

    countries are free of FMD without vaccination (Rweyemamu et al., 2008). However

    in some areas in Turkey the disease is endemic. There have been a few reported

    outbreaks in the Russian Federation but the true prevalence is difficult to establish

    (Rweyemamu et al., 2008).

    In Africa, FMD free countries without vaccination include the Indian ocean

    Island Countries (Rweyemamu et al., 2008). South African Development Community

    (SADC) countries (Swaziland, Lesotho, Republic of South Africa, Botswana and

    Namibia) have zonal or country freedom status. In some of these countries, there are

    FMD-infected wildlife areas but game ranching or other conservation activities are not

    allowed within FMD-free zones. The disease was brought under control in the north

    SADC cluster and some parts have remained largely unaffected, but other parts are

    under constant threat of infection. In the Angola subregion FMD is possibly endemic,

    however the true incidence is not known. The East African countries and eastern part

  • 26

    of the Democratic Republic of Congo contain the most complicated FMD situation in

    the world. The Horn of Africa/Inter-Governmental Authority on Development (IGAD)

    cluster is probably the major FMD endemic foci in Africa. The Soudan/Sahel cluster

    is predominantly pastoral. Thus it may be an important disease corridor cluster linking

    the IGAD with West Africa, and West Africa with North Africa. The Coastal belt

    countries of West and Central Africa are considered secondary endemic clusters that

    get infected from the Soudan/Sahel cluster. Some parts of North Africa have had no

    reported outbreaks since 1999 (Rweyemamu et al., 2008). However, widespread field

    outbreaks of FMD occurred in Egypt in 2012 that were phylogenetically shown to be

    from Libya (Ahmed et al., 2012).

    The situation of FMD in the Middle East is unclear and it is not known if it is a

    primary or secondary endemic cluster (Rweyemamu et al., 2008). It is likely that the

    situation will continue to be unstable and there is a high possibility of incursions of

    exotic viral strains. Results from molecular characterization indicate a link between

    the virus strains of Asia (i.e. Pakistan) and Africa (Rweyemamu et al., 2008).

    In South-East Asia, FMD is endemic in seven countries namely Cambodia,

    Laos, Malaysia, Myanmar, the Philippines, Thailand and Vietnam, and three are free

    of the disease (Brunei, Indonesia and Singapore) (Gleeson, 2002). Part of the

    Philippines (Mindanao, Visayas and recently Luzon) and Malaysia (Sabah and

    Sarawak) are also recognised internationally as being free zones of FMD without

    vaccination (http://www.oie.int/?id=246, accessed on 6 Feb 2014). Seven genetically

    distinct lineages (O/SEA/Mya-98, O/SEA/Cam-94, O/ME-SA/PanAsia, O/ME-

    SA/PanAsia-2, O/CATHAY, A/ASIA/Sea-97, and serotype Asia 1) co-circulate in

    mainland Southeast Asia (Abdul-Hamid et al., 2011a). In East Asia, Japan regained

    its free status and the Republic of Korea and Taiwan are on suspension of their FMD-

    http://www.oie.int/?id=246

  • 27

    free status (http://www.oie.int/fileadmin/Home/js/images/fmd/FMD_Asia_ENG.gif,

    accessed on 6 Feb 2014). The Cathay topotype O serotype appears endemic in pigs in

    southern China. The Eurasian pandemic of type O Pan-Asia topotype spread to the

    UK in 2001 resulting in massive outbreaks. The two topotypes along with Asia 1

    entered Vietnam and then spread into Cambodia, Laos and eventually Thailand.

    Additionally, FMDV regularly moves from Myanmar and Laos into Yunnan Province,

    China. Viruses of types O, A and Asia 1 (http://www.oie.int/eng/A_FMD2012,

    accessed on 6 Feb 2014) which originate in South Asia, have spread into SEA through

    the movement of livestock from Bangladesh into Myanmar and onwards to Thailand

    and Malaysia (Rweyemamu et al., 2008). Afghanistan, Bahrain, Pakistan, Iran and

    Turkey had outbreaks of Asia 1 in 2012 (http://www.oie.int/eng/A_FMD2012,

    accessed on 6 Feb 2014).

    With the South Asia Cluster, India and Pakistan are central to the progressive

    control of FMD in South and Central Asia due to their large cattle population which

    act as a source of livestock for neighbouring countries (Rweyemamu et al., 2008).

    Movement of these animals has facilitated FMDV transmission

    (http://www.oie.int/eng/A_FMD2012, accessed on 6 Feb 2014).

    The Central Asia cluster is no longer capable to cope with increased cross-border

    trade as FMD type O and Asia 1 are now widespread and reporting of outbreaks is not

    optimal (Rweyemamu et al., 2008).

    The epidemiology of FMD in South America is described based on ecological

    zones (Rweyemamu et al., 2008). The knowledge gathered has demonstrated that

    livestock production systems play important role in the maintenance and spread of

    FMDV in the animal populations. Types O, A and C have all been recorded in South

    America (Rweyemamu et al., 2008).

    http://www.oie.int/fileadmin/Home/js/images/fmd/FMD_Asia_ENG.gifhttp://www.oie.int/eng/A_FMD2012http://www.oie.int/eng/A_FMD2012http://www.oie.int/eng/A_FMD2012

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    2.7.4 Foot and mouth disease in Malaysia

    Malaysia has recently shown renewed interest in controlling and eradicating

    FMD in livestock. This move was seen to have economic advantages with respect to

    the international trade of livestock and livestock products however this requires

    establishing freedom from FMD. Responding to this need, a regional coordination unit

    (RCU) to promote improved control of FMD was established by the OIE in Bangkok,

    Thailand in late 1997 and was called SEAFMD 2020. This plan provides a roadmap

    for FMD freedom with vaccination by 2020 in South-east Asia (OIE-SEAFMD,

    2007). Economic studies to assess the impact of SEAFMD control and eradication

    plans in Thailand, Laos and the P