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Setting up an MEG and EEG experiment Sheraz KHAN Research Fellow Athinoula A. Martinos Center for Biomedical Imaging MGH/MIT/Harvard
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Setting up an MEG and EEG experiment

Apr 19, 2022

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Page 1: Setting up an MEG and EEG experiment

Setting up an MEG and EEG experiment

Sheraz KHAN

Research Fellow

Athinoula A. Martinos Center for Biomedical Imaging

MGH/MIT/Harvard

Page 2: Setting up an MEG and EEG experiment

Overview

Experimental Paradigms for MEG/EEG

Testing Experimental Paradigms

A typical MEG/EEG Visit

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Page 3: Setting up an MEG and EEG experiment

Experimental Paradigms for MEG/EEG

-Inexpensive

-Portable

-Clinical

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Electricalencephalography (EEG)

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Page 4: Setting up an MEG and EEG experiment

Experimental Paradigms for MEG/EEG

Not distorted by skull and scalp/ Simple modeling

Less preparation time/ Reference free

Best Results combing MEG with EEG (Wood et al,Science,85)

Khan & Cohen, 2013

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Magnetoencephalography (MEG)

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Page 5: Setting up an MEG and EEG experiment

Experimental Paradigms for MEG/EEG

Upright Supine

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Page 6: Setting up an MEG and EEG experiment

Experimental Paradigms for MEG/EEG

The high temporal resolution of MEG/EEG not only allow

us to follow sensory/cognitive events at millisecond

resolution but also decipher feedforward from feedback

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High temporal resolution

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Page 7: Setting up an MEG and EEG experiment

Experimental Paradigms for MEG/EEG

block vs event related design

Block design Event related design

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The most common experimental

design is the interleaved

presentation of stimuli of various

categories and valences

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Page 8: Setting up an MEG and EEG experiment

Experimental Paradigms for MEG/EEG

Clinical Applications

Dipole Localization

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MEG Sensor SpaceEEG Sensor Space

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Page 9: Setting up an MEG and EEG experiment

Experimental Paradigms for MEG/EEG

Sleep studies

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MEG

Brain Rhythms

During sleep

Sleep Cycle

EEG

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Page 10: Setting up an MEG and EEG experiment

Experimental Paradigms for MEG/EEG

Four basic stimulation systems

Auditory

Visual

Somatosensory

Olfactory

Auditory Visual

OlfactoryTactile-Somatosensory

Electrical-Somatosensory

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Page 11: Setting up an MEG and EEG experiment

Experimental Paradigms for MEG/EEG

Auditory Experiment

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Cortical ResponsesTransfer function

Protocol

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Page 12: Setting up an MEG and EEG experiment

Experimental Paradigms for MEG/EEG

Visual Experiments

Khan et al, PNAS ,201312/24/2015 Setting up an MEG and EEG Experiment

Protocol

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Page 13: Setting up an MEG and EEG experiment

Experimental Paradigms for MEG/EEG

Electrical Mechanical

Tactile Khan et al, Frontiers Human Neuroscience ,2014

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Somatosensory Experiments

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Page 14: Setting up an MEG and EEG experiment

Experimental Paradigms for MEG/EEG

Frequency-Tagging: When stimulus with specific

temporal encoding (e.g., visual pattern flickering at a well-

defined frequency) may trigger brain responses locked to

the stimulus presentation rate and its harmonics.

Khan et al, Brain ,2015

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Page 15: Setting up an MEG and EEG experiment

Experimental Paradigms for MEG/EEG

Visual Tagging

Somatosensory Tagging Khan et al, Brain ,2015

Baldauf et al, Science ,2014

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Page 16: Setting up an MEG and EEG experiment

Overview

Experimental Paradigms for MEG/EEG

Testing Experimental Paradigms

A typical MEG/EEG Visit

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Page 17: Setting up an MEG and EEG experiment

Testing Experimental Paradigms

Adjusting Stimulus Parameters

Trial

Run

Stimulus Duration

Inter-Stimulus interval (ISI)

Inter-Stimulus Jitter (ISJ)

Stimulus Onset Asynchrony (SOA)

Stimulus Duration

ISI

ISJ

SOA

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Single Trial

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Page 18: Setting up an MEG and EEG experiment

Testing Experimental Paradigms

Stimulus programming options

Open Source

Matlab based Psychophysics(psychtoolbox.org)

Python based PsychoPy (psychopy.org)

Commercial Packages

Presentation (neurobs.com)

Stim2 (compumedicsneuroscan.com)

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Page 19: Setting up an MEG and EEG experiment

Testing Experimental Paradigms

Testing Timing, Jitter, Sound level, Brightness

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Photo Diode

Jitter

Protocol

Sound Meter

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Page 20: Setting up an MEG and EEG experiment

Timing Accuracy

Averaging evoked fields

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Number of Trials

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Page 21: Setting up an MEG and EEG experiment

Testing Experimental Paradigms

Testing Stimulus equipment for Artifact

Auditory

Tactile

Reponses Pad

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Page 22: Setting up an MEG and EEG experiment

Testing Experimental Paradigms

Adjusting Hardware Setting

Sampling Rate

Filter Bandwidth

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Auditory Brainstem Responses

Working Memory

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Page 23: Setting up an MEG and EEG experiment

Testing Experimental Paradigms

Behavioral Testing

Somatosensory priming

Valence Testing

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Page 24: Setting up an MEG and EEG experiment

Testing Experimental Paradigms

Population Diversity

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Page 25: Setting up an MEG and EEG experiment

Overview

Experimental Paradigms for MEG/EEG

Testing Experimental Paradigms

A typical MEG/EEG Visit

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Page 26: Setting up an MEG and EEG experiment

A typical MEG/EEG Visit

A typical visit starts the day before, with a Call or email to

the subject to remind:

Sleep Well

Not to drink to much coffee or energy drink

No Makeup

Weight and if applicable eyeglasses prescription

Appropriate clothing

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Page 27: Setting up an MEG and EEG experiment

A typical MEG/EEG Visit

Preparing EEG cap,

Extra electrodes

HPI and digitizer

Stimulus testing , Auditory gains, brightness, room light.

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Digitizer Head Position Indicator coilsEEG Cap

ElectrodesTrigger Box

Before the Subject arrives

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Page 28: Setting up an MEG and EEG experiment

A typical MEG/EEG Visit

Tuning Channels

Acquire Empty room

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Tuner

Noise Co-variance matrix Acquisition software

Before the Subject arrives

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Page 29: Setting up an MEG and EEG experiment

A typical MEG/EEG Visit

Prepare bedding

Prepare gowns

IRB/Consent forms

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Bedding

MEG/MRI compatible

Glasses

Scrubs

Before the Subject arrives

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Page 30: Setting up an MEG and EEG experiment

A typical MEG/EEG Visit

After the Subject arrives

Consent forms

Explanation of protocols

Change to gown

Test Subject for Artifact

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Screening form

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Page 31: Setting up an MEG and EEG experiment

A typical MEG/EEG Visit

Two Types of artifacts:

Biological

Blinks/secedes

Cardiac

Non Biological

Dental

Metal on body (internal/external)

Jewelry

Brain Stimulators

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Degaussers

Different artifacts

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Page 32: Setting up an MEG and EEG experiment

A typical MEG/EEG Visit

Head digitization

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Page 33: Setting up an MEG and EEG experiment

A typical MEG/EEG Visit

Position coils

Polhemus Data

Head digitization

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Page 34: Setting up an MEG and EEG experiment

A typical MEG/EEG Visit

Electrode Placement

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Page 35: Setting up an MEG and EEG experiment

A typical MEG/EEG Visit

Once you have placed the

subject in the MSR close the

MSR door

Use intercom; ask the subject

to relax

Check MEG signals

Once you start the acquisition

and at the beginning of each

run, you will be prompted to

record HPI

Once HPI measurement is ok,

you can start recording.

Continuously inspect the

quality of your data!

If individual bad channel

appears during the recording,

mark it as bad channel12/24/2015 Setting up an MEG and EEG Experiment

Intercom

During Experiment

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Page 36: Setting up an MEG and EEG experiment

A typical MEG/EEG Visit

After Experiment Finishes

Tell subject you are opening the door

Remove HPIs and electrodes/EEG cap

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Subject coming out

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Page 37: Setting up an MEG and EEG experiment

A typical MEG/EEG Visit

After the Subject leaves

Clean and disinfect the

electrodes/EEG Cap and the HPI

Clean the MEG helmet and chair.

Switch off the video projector

Switch off the light in the MSR

Log out of the acquisition computer

Take with you any leftover of your

presence (used papers,belts….)

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Wash Electrodes

Clean Countertops

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Page 38: Setting up an MEG and EEG experiment

A typical MEG/EEG Visit

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Page 39: Setting up an MEG and EEG experiment

Thank you

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Page 40: Setting up an MEG and EEG experiment

Thank You

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Conflict of Interest Disclosure

Sheraz Khan

Advanced Imaging in Clinical/Translational Neuroscience

Research

April 13-15, 2015

I have no relevant financial

relationships with a commercial entity

producing healthcare-related products

and/or services.

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