doctoral programme in informatics engineering october 1 st , 2012 supervisor José Luís Guimarães Oliveira universidade de aveiro jury Artur Manuel Soares da Silva universidade de aveiro Víctor Maojo García universidade politécnica de madrid Rui Pedro Sanches de Castro Lopes escola superior de tecnologia e gestão do instituto politécnico de bragança Francisco José Moreira Couto universidade de lisboa Carlos Manuel Azevedo Costa universidade de aveiro Pedro Lopes [email protected]FOR BIOMEDICAL APPLICATIONS SERVICE COMPOSITION
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doctoral programme in informatics engineering
october 1st, 2012
supervisor
José Luís Guimarães Oliveirauniversidade de aveiro
jury
Artur Manuel Soares da Silvauniversidade de aveiro
Víctor Maojo Garcíauniversidade politécnica de madrid
Rui Pedro Sanches de Castro Lopesescola superior de tecnologia e gestão
do instituto politécnico de bragança
Francisco José Moreira Coutouniversidade de lisboa
RESULTSEU-ADR WEB PLATFORMhttp://bioinformatics.ua.pt/euadr
automatic filtering and substantiation of drug safety signals A Bauher-Mehren, EM van Mulligen, P Avillach, MC Carrascosa, B Singh, R Garcia-Serna, Pedro Lopes, José Luís Oliveira, G Diallo, J Mestres, E Ahlberg Helgee, S Boyer, F Sanz, JA Kors, LI Furlong
plos computational biologymarch 2012
the eu-adr web platform: delivering advanced pharmacovigilance toolsJosé Luís Oliveira, Pedro Lopes, Tiago Nunes, David Campos, S Boyer, E Ahlberg, EM Van Mulligen, JA Kors, B Singh, LI Furlong, F Sanz, A Bauer-Mehren, MC Carrascosa, J Mestres, P Avillach, G Diallo, C Diaz, J Van der Lei
pharmacoepidemiology and drug safety [second revision]october 2012
a bioinformatics hub for pharmacovigilance knowledge providersPedro Lopes, David Campos, Tiago Nunes, José Luís Oliveira
acm transactions on management information systems [ongoing]november 2012
resource integration approaches for service composition
enhancing service composition with the semantic web and rad
NEW STRATEGIES TO IMPROVE AND ADD VALUE TO SERVICE COMPOSITION SCENARIOS
workflow-based strategies for service composition
resource integration approaches for service composition
enhancing service composition with the semantic web and rad
NEW STRATEGIES TO IMPROVE AND ADD VALUE TO SERVICE COMPOSITION SCENARIOS
NEXT-GENERATION BIOMEDICAL APPLICATIONS
the semantic web paradigmthe perfect solution for life sciences natural complexity
previous worknew service composition strategies for interoperability using scientific workflowsnew service composition strategies for resource integration
life sciencescomplex mesh of data and servicesmodern demands keep pushing computer science forward
rapid application developmenteasily-configurable service composition implementation environment
build the next generation of service composition applications faster
enhanced rapid application developmentstraightforward service composition setup process
design a new semantic web framework to streamline the creation of next generation biomedical applications ?
advanced data integration enginerich service composition description, flexible integration from heterogeneous resources
state-of-the-art interoperabilityapis enable service composition for everything and everyone
semantic knowledge managementinvolve semantic web technologies at all service composition layers
knowledge federationenable distributed access to knowledge
empower ecosystemsdelivery network for custom cross-platform and cross-device applications
NEXT-GENERATION BIOMEDICAL APPLICATIONS
FRAMEWORK MODEL
API
DATA INTEGRATION CONNECTORS
dc:title rdfs:labelowl:imports
KNOWLEDGE BASE
CSV XML SQL SPARQL
REST JAVA LDATA SPARQL
foaf:name
SINGLE INSTANCE
interoperabilitydata out
integrationdata in
KNOWLEDGE FEDERATION LAYER
API
DATA INTEGRATION CONNECTORS
KNOWLEDGE BASE
CSV XML SQL SPARQL
REST JAVA LDATA SPARQL
API
DATA INTEGRATION CONNECTORS
KNOWLEDGE BASE
CSV XML SQL SPARQL
REST JAVA LDATA SPARQL
API
DATA INTEGRATION CONNECTORS
dc:title rdfs:labelowl:imports
KNOWLEDGE BASE
CSV XML SQL SPARQL
REST JAVA LDATA SPARQL
foaf:name
FEDERATION
FRAMEWORK MODEL
FRAMEWORK ARCHITECTURE
JavaRESTpubby
LinkedData
JosekiSPARQL
ABSTRACTION ENGINE
6CLIENT APPLICATIONS
5API
4APPLICATION ENGINE
3KNOWLEDGE BASE
2INTEGRATION ENGINE
1EXTERNAL SOURCES
CSV SQLXML SPARQL
JavaRESTpubby
LinkedData
JosekiSPARQL
ABSTRACTION ENGINE
6CLIENT APPLICATIONS
5API
4APPLICATION ENGINE
3KNOWLEDGE BASE
2INTEGRATION ENGINE
1EXTERNAL SOURCES
CSV SQLXML SPARQL
future-proof interoperabilityrest services
sparql endpoint + linkeddata interfaces available by default
java + javascript libraries
streamlined application engine“semantic web in a box”
advanced integration enginesemantic web translationnew extract-transform-load strategy
flexible service composition configurationcomprehensive connectors & selectorsload data from csv, xml, sql and sparql sources
modern client-side developmentready for any ui framework
FRAMEWORK ARCHITECTURE
rapid application developmentquickly build a new service composition application ecosystem
HIGHLIGHTS
a framework to empower the creation of next-generation service composition-based semantic software !
semantic data integration platformflexible acquisition and translation of data from heterogeneous resources
semantic web and linkeddata interoperabilityfuture-proof interoperability with the most innovative application paradigmsemantic reasoning and inference