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Role of Barcoding at Culture Collections Frithjof C. Küpper Culture Collection of Algae and Protozoa (CCAP) Scottish Association for Marine Science Dunstaffnage Marine Laboratory Oban, Argyll PA37 1QA, Scotland, UK
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Role of Barcoding at Culture Collections Frithjof C. Küpper Culture Collection of Algae and Protozoa (CCAP) Scottish Association for Marine Science Dunstaffnage.

Jan 17, 2016

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Gabriella Short
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Page 1: Role of Barcoding at Culture Collections Frithjof C. Küpper Culture Collection of Algae and Protozoa (CCAP) Scottish Association for Marine Science Dunstaffnage.

Role of Barcoding at Culture Collections

Frithjof C. Küpper

Culture Collection of Algae and Protozoa (CCAP)

Scottish Association for Marine Science

Dunstaffnage Marine Laboratory

Oban, Argyll PA37 1QA, Scotland, UK

Page 2: Role of Barcoding at Culture Collections Frithjof C. Küpper Culture Collection of Algae and Protozoa (CCAP) Scottish Association for Marine Science Dunstaffnage.

Barcoding and Culture Collections

Two main aspects:

• CCs as repositories of biological standards

• Operational benefits of barcode sequences for CCs

Page 3: Role of Barcoding at Culture Collections Frithjof C. Küpper Culture Collection of Algae and Protozoa (CCAP) Scottish Association for Marine Science Dunstaffnage.

Barcoding and Culture Collections

Two main aspects:

• CCs as repositories of biological standards

• Operational benefits of barcode sequences for CCs

Page 4: Role of Barcoding at Culture Collections Frithjof C. Küpper Culture Collection of Algae and Protozoa (CCAP) Scottish Association for Marine Science Dunstaffnage.

Culture collections as repositories

of biological standards

• Long-term safekeeping of type cultures and model / reference strains

→ Barcode sequences in databases need to be matched by the “real thing“ somewhere: type materials

→ An emerging role for CCs and other biological resource centers (BRCs)

Page 5: Role of Barcoding at Culture Collections Frithjof C. Küpper Culture Collection of Algae and Protozoa (CCAP) Scottish Association for Marine Science Dunstaffnage.

Barcoding and Culture Collections

Two main aspects:

• CCs as repositories of biological standards

• Operational benefits of barcode sequences for CCs

Page 6: Role of Barcoding at Culture Collections Frithjof C. Küpper Culture Collection of Algae and Protozoa (CCAP) Scottish Association for Marine Science Dunstaffnage.

Operational benefits of barcode sequences for

culture collections

• Quality control / strain identity

→ Potential to obtain an unambiguous identifier for every single strain

• “the dirty little secret of culture collections”

Page 7: Role of Barcoding at Culture Collections Frithjof C. Küpper Culture Collection of Algae and Protozoa (CCAP) Scottish Association for Marine Science Dunstaffnage.

• Alfred P. Sloan Foundation

Credits

Chenal de l’Ile de Batz, Roscoff – FCK, 1996

Page 8: Role of Barcoding at Culture Collections Frithjof C. Küpper Culture Collection of Algae and Protozoa (CCAP) Scottish Association for Marine Science Dunstaffnage.

Dunstaffnage Marine Laboratory, Oban, Scotland

Thank you.