Python and HDF5

Page 1 <img data-url='document/python-and-hdf5.html?page=1' data-page='1' class='cut-thumb lazyload' alt='Page 1: Python and HDF5' loading='lazy' src='data:image/gif;base64,iVBORw0KGgoAAAANSUhEUgAAAAEAAAABCAYAAAAfFcSJAAAADUlEQVR42mNk+P+/HgAFhAJ/wlseKgAAAABJRU5ErkJggg==' data-src='https://reader036.cupdf.com/reader036/viewer/2022081718/5462a4b2af7959f84e8b4f77/html5/thumbnails/1.jpg' width='140' height='200' /> Python and HDF5Andrew Collette

University of Colorado Boulder

Page 2 <img data-url='document/python-and-hdf5.html?page=2' data-page='2' class='cut-thumb lazyload' alt='Page 2: Python and HDF5' loading='lazy' src='data:image/gif;base64,iVBORw0KGgoAAAANSUhEUgAAAAEAAAABCAYAAAAfFcSJAAAADUlEQVR42mNk+P+/HgAFhAJ/wlseKgAAAABJRU5ErkJggg==' data-src='https://reader036.cupdf.com/reader036/viewer/2022081718/5462a4b2af7959f84e8b4f77/html5/thumbnails/2.jpg' width='140' height='200' /> CU Boulder Accelerator

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Page 4 <img data-url='document/python-and-hdf5.html?page=4' data-page='4' class='cut-thumb lazyload' alt='Page 4: Python and HDF5' loading='lazy' src='data:image/gif;base64,iVBORw0KGgoAAAANSUhEUgAAAAEAAAABCAYAAAAfFcSJAAAADUlEQVR42mNk+P+/HgAFhAJ/wlseKgAAAABJRU5ErkJggg==' data-src='https://reader036.cupdf.com/reader036/viewer/2022081718/5462a4b2af7959f84e8b4f77/html5/thumbnails/4.jpg' width='140' height='200' /> A. Collette et al. Phys. Rev. Lett 105, 195003 (2010)

Page 5 <img data-url='document/python-and-hdf5.html?page=5' data-page='5' class='cut-thumb lazyload' alt='Page 5: Python and HDF5' loading='lazy' src='data:image/gif;base64,iVBORw0KGgoAAAANSUhEUgAAAAEAAAABCAYAAAAfFcSJAAAADUlEQVR42mNk+P+/HgAFhAJ/wlseKgAAAABJRU5ErkJggg==' data-src='https://reader036.cupdf.com/reader036/viewer/2022081718/5462a4b2af7959f84e8b4f77/html5/thumbnails/5.jpg' width='140' height='200' /> IDL

Page 6 <img data-url='document/python-and-hdf5.html?page=6' data-page='6' class='cut-thumb lazyload' alt='Page 6: Python and HDF5' loading='lazy' src='data:image/gif;base64,iVBORw0KGgoAAAANSUhEUgAAAAEAAAABCAYAAAAfFcSJAAAADUlEQVR42mNk+P+/HgAFhAJ/wlseKgAAAABJRU5ErkJggg==' data-src='https://reader036.cupdf.com/reader036/viewer/2022081718/5462a4b2af7959f84e8b4f77/html5/thumbnails/6.jpg' width='140' height='200' /> IDL is a great platform!

Page 7 <img data-url='document/python-and-hdf5.html?page=7' data-page='7' class='cut-thumb lazyload' alt='Page 7: Python and HDF5' loading='lazy' src='data:image/gif;base64,iVBORw0KGgoAAAANSUhEUgAAAAEAAAABCAYAAAAfFcSJAAAADUlEQVR42mNk+P+/HgAFhAJ/wlseKgAAAABJRU5ErkJggg==' data-src='https://reader036.cupdf.com/reader036/viewer/2022081718/5462a4b2af7959f84e8b4f77/html5/thumbnails/7.jpg' width='140' height='200' /> Page 8 <img data-url='document/python-and-hdf5.html?page=8' data-page='8' class='cut-thumb lazyload' alt='Page 8: Python and HDF5' loading='lazy' src='data:image/gif;base64,iVBORw0KGgoAAAANSUhEUgAAAAEAAAABCAYAAAAfFcSJAAAADUlEQVR42mNk+P+/HgAFhAJ/wlseKgAAAABJRU5ErkJggg==' data-src='https://reader036.cupdf.com/reader036/viewer/2022081718/5462a4b2af7959f84e8b4f77/html5/thumbnails/8.jpg' width='140' height='200' /> SciPy

Page 9 <img data-url='document/python-and-hdf5.html?page=9' data-page='9' class='cut-thumb lazyload' alt='Page 9: Python and HDF5' loading='lazy' src='data:image/gif;base64,iVBORw0KGgoAAAANSUhEUgAAAAEAAAABCAYAAAAfFcSJAAAADUlEQVR42mNk+P+/HgAFhAJ/wlseKgAAAABJRU5ErkJggg==' data-src='https://reader036.cupdf.com/reader036/viewer/2022081718/5462a4b2af7959f84e8b4f77/html5/thumbnails/9.jpg' width='140' height='200' /> 45,000 packages

Page 10 <img data-url='document/python-and-hdf5.html?page=10' data-page='10' class='cut-thumb lazyload' alt='Page 10: Python and HDF5' loading='lazy' src='data:image/gif;base64,iVBORw0KGgoAAAANSUhEUgAAAAEAAAABCAYAAAAfFcSJAAAADUlEQVR42mNk+P+/HgAFhAJ/wlseKgAAAABJRU5ErkJggg==' data-src='https://reader036.cupdf.com/reader036/viewer/2022081718/5462a4b2af7959f84e8b4f77/html5/thumbnails/10.jpg' width='140' height='200' /> HDF5

Page 11 <img data-url='document/python-and-hdf5.html?page=11' data-page='11' class='cut-thumb lazyload' alt='Page 11: Python and HDF5' loading='lazy' src='data:image/gif;base64,iVBORw0KGgoAAAANSUhEUgAAAAEAAAABCAYAAAAfFcSJAAAADUlEQVR42mNk+P+/HgAFhAJ/wlseKgAAAABJRU5ErkJggg==' data-src='https://reader036.cupdf.com/reader036/viewer/2022081718/5462a4b2af7959f84e8b4f77/html5/thumbnails/11.jpg' width='140' height='200' /> Fast database built on HDF5

h5pyGeneral-purpose HDF5 library

Page 12 <img data-url='document/python-and-hdf5.html?page=12' data-page='12' class='cut-thumb lazyload' alt='Page 12: Python and HDF5' loading='lazy' src='data:image/gif;base64,iVBORw0KGgoAAAANSUhEUgAAAAEAAAABCAYAAAAfFcSJAAAADUlEQVR42mNk+P+/HgAFhAJ/wlseKgAAAABJRU5ErkJggg==' data-src='https://reader036.cupdf.com/reader036/viewer/2022081718/5462a4b2af7959f84e8b4f77/html5/thumbnails/12.jpg' width='140' height='200' /> Datasets: arrays on disk

Groups: filesystem-like folders

Attributes: Key-value metadata

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www.h5py.org

http://www.h5py.org

Python and HDF5

Technology