Pub tator a web based tool for assisting manual biocuration

By Anil Kumar

M.Sc. II

Systems Biology and Bioinformatics

PubTator is a automated web based system for assisting biocuration.

Manually curating knowledge from biomedical literature into structured databases is highly expensive and time consuming.

It makes it difficult to keep pace with the rapid growth of the literature.

PubTator is unique in a way by providing PubMed like interface andis equipped with challenge winning text mining algorithms.

PubTator has shown the capability of improving both efficiency and accuracy of manual curation.

It is publicly available at: http://www.ncbi.nlm.nih.gov/CBBresearch/Lu/Demo/PubTator/

Homepage

TaxonomyFiltering

BioConceptsDisplay

Taxonomy Menu

1. Click here to

select this pmid

1. Click here to select all

2. Add to a new Collection

2. Add to a new Collection

Creating a new Collection

Defining a new Annotation Collection

New Collection

New Collection Page

Creating a new Bioconceptand a Biorelation

Add a sub-bioconcept/ delete

bioconcept

Create a bioconcept

Bioconcept definition

Choose the ancestors and children in bioconcept ontology

structure

Create a bio-relation

Bio-relation definition

Document Triage

Annotating a File

1. Select text

2. Click on a relevant button

3. Enter ID of the bioconcept

After Annotation

1. Select Bioconcept

2. Click Button

3. Bio-relation display

To save annotations click on this button

Establishing Biorelations

Download Annotations for

single PMID

Download annotations for this collection

Downloading Annotations

Download annotations in BioC format

Thank You