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U N C L A S S I F I E D Operated by Los Alamos National Security, LLC for the U.S. Department of Energy’s NNSA Slide 1 The MPAS-Ocean Vertical Coordinate Mark Petersen and the MPAS-Ocean development team Los Alamos National Laboratory
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Feb 01, 2021

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  • U N C L A S S I F I E D

    Operated by Los Alamos National Security, LLC for the U.S. Department of Energy’s NNSA

    Slide 1

    The MPAS-Ocean Vertical Coordinate

    Mark Petersen

    and the MPAS-Ocean development team

    Los Alamos National Laboratory

  • Slide 2

    The MPAS-Ocean Vertical Coordinate

    Z-Level: Fixed coordinate. POP, MOM, MIT-GCM, NEMO

    Z-star: Layers expand with SSH. MOM, recently POP, others

    sigma: terrain-following. ROMS, NEMO

    isopycnal: MyCOM, GOLD

    hybrid isopycnal: HyCOM

    partial bottom cells (in addition to others)

    z-tilde: frequency-filtered coordinate (in addition to others)

  • Slide 3

    The MPAS-Ocean Vertical Coordinate

    n  Z-Level

    n  Z-star

    n  sigma: only tested in idealized cases so far

    n  isopycnal: idealized only, no zero thickness layers

    n  hybrid isopycnal: under development

    n  partial bottom cells

    n  z-tilde: frequency-filtered coordinate

  • Arbitrary Lagrangian-Eulerian (ALE) Vertical Coordinate

    Thickness equation:

    wtop is transport through interface

    z-level , except layer 1 ∂hk∂t

    = 0

    isopycnal (for adiabatic, idealized studies) w=0

    x, y

    z

    z-star Layer thickness changes in proportion to SSH

    ∂hk∂t

    =ckck

    k∑

    ∂η∂t

  • Slide 5

    Test Problems (Ilicak et al. 2012)

    n  Lock exchange

    n  Baroclinic eddies

    n  Overflow

    n  Internal gravity wave

    n  Sub Ice-Shelf

    x, km

    dept

    h, m

    10 20 30 40 50 60

    5

    10

    15

    20 5

    10

    15

    20

    25

    30

    x, km

    y, k

    m

    50 100 150

    50

    100

    150

    200

    250

    300

    350

    400

    450

    500

    50 100 150 200

    0

    50

    100

    150

    200

    250

    300

    350

    400

    450

    500

    x, km

    dept

    h, m

    11

    12

    13

    14

    15

    16

    17

    18

    19

  • Lock Exchange Test Case

    Slide 6

    n  Zero tracer diffusion n  Vary horizontal viscosity n  Linear equation of state n  Simplest test of mixing

    MPAS-O

    Ilicak et al. (2012)

    n  Ilicak et al. (2012) compares ROMS, MITgcm, MOM, GOLD

    n  Theoretical wave propagation speed is

    uf =1 2 gH δρ ρ0( )

  • Resting Potential Energy (RPE): a measure of mixing

    Slide 7

    n  Definition (Ilicak et al. 2012):

    n  is the sorted density state, with heaviest on the bottom.

    RPE = g ρ*zdV∫∫∫ρ*

    1020

    1020

    1030

    1030

    ρ(x, z)

    z = 2

    z = 6

    ρ*(z)

    z =1

    z = 7 1020 1020 1030 1030

    z = 5z = 3

    RPE = g ρi

    *ziVi

    i

    RPE =16360gVcell

    1025

    1020

    1030

    1025 z = 2

    z = 6

    z =1

    z = 7 1020 1025 1025 1030

    z = 5z = 3

    RPE =16370gVcell

    1025

    1025

    1025

    1025 z = 2

    z = 6

    z =1

    z = 7 1025 1025 1025 1025

    z = 5z = 3

    RPE =16400gVcell

    Example 1: No mixing

    Example 2: some mixing

    Example 3: fully mixed

  • 0 5 10 15

    0

    2

    4

    6

    8x 10−5

    time, hours

    (RPE

    −RPE

    (0))/

    RPE

    (0)

    νh=0.01νh=0.1νh=1νh=10νh=100νh=200

    Resting Potential Energy (RPE): Lock Exchange

    Slide 8

    n  RPE increases with time as fluid is mixed n  RPE depends on horizontal viscosity as follows:

    low horizontal viscosity high Reyolds number high RPE, more mixing

    high horizontal viscosity low Reyolds number low RPE, less mixing

    data from Ilicak et al. (2012)

    RPE(t)− RPE(0)RPE(0)

    100 10510−4

    10−3

    grid Reynolds number

    dRPE

    /dt,

    W/m

    2

    MPAS−O: z−levelMPAS−O: z−starMITGCM

    dRPE(t)dt

    less mixing

  • Baroclinic Eddies Test Case

    100 101 102 103

    10−4

    10−3

    grid Reynolds number

    dRPE

    /dt,

    W/m

    2

    MPAS−Ocean z−levelMPAS−Ocean z−starPOP z−levelPOP z−starMITGCMMOM

    dRPE(t)dt

    10km resolution

    Slide 9

    n  Idealized ACC: periodic channel, f-plane

    n  Compare to POP z-level and POP z-star

    less mixing

  • Overflow Test Case

    n  Zero tracer diffusion

    n  vary hor. viscosity

    n  Test z-level, z-star, partial bottom cells, and sigma coordinate

    100 102 104 106

    100

    101

    grid Reynolds number

    dRPE

    /dt,

    W/m

    2

    MPAS−O, z*−full cellMPAS−O, z*−pbcMPAS−O, σ

    dRPE(t) / dt

    100 101 102 103

    10−4

    10−3

    grid Reynolds number

    dRPE

    /dt,

    W/m

    2

    MPAS−Ocean z−levelMPAS−Ocean z−starPOP z−levelPOP z−starMITGCMMOM

  • Internal Wave Test Case

    Slide 11 100 101 102 103 104 105

    10−4

    10−3

    grid Reynolds number

    dRPE

    /dt,

    W/m

    2

    MPAS−O z−levelMPAS−O z−starMITGCMMOM

    dRPE(t) / dt

  • Frequency-filtered thickness: z-tilde (Leclair & Madec 2011)

    Slide 12

    n  Motivation: We would like internal gravity waves to not cause mixing.

    n  Here lines show grid cells, for z-star vertical grid:

    n  What if we allow layer thickness to oscillate with internal waves?

    n  This can be done with a low-pass filter on the divergence

  • Frequency-filtered thickness: z-tilde (Leclair & Madec 2011)

    Slide 13

    n  A low-pass filter on the baroclinic divergence:

    Dk = D+ !Dk = D+Dklf +Dk

    hfDivergence:

    hor. divergence

    low frequency baroclinic div.

    high frequency baroclinic div. barotropic

    baroclinic

    τ Dlf

    Low-pass filter:

    n  is the filter time scale, typically five days.

    n  It controls the time scales included in the low frequency divergence.

    ∂Dklf

    ∂t= −

    τ DlfDk

    lf − ′Dk

    τ Dlf

    short time, high frequency oscillations change layer thickness

    long time, low frequency oscillations do not change layer thickness

    Dk =∇⋅ hkuk( )

  • Frequency-filtered thickness: z-tilde (Leclair & Madec 2011)

    Slide 14

    n  A low-pass filter on the baroclinic divergence:

    ∂Dklf

    ∂t= −

    τ DlfDk

    lf − ′Dk Low-pass filter:

    ∂hkhf

    ∂t= −Dk

    hf−2π

    τ hhfhkhf+∇⋅ κhhf∇hk

    hf( )

    ∂hk

    ∂t=∂hk

    ext

    ∂t+∂hk

    hf

    ∂t

    High-frequency thickness equation:

    Revised thickness equation:

    Two new prognostic equations

    z-star part

    z-tilde part

    forcing restoring diffusion

    Dk = D+ !Dk = D+Dklf +Dk

    hfDivergence:

    low frequency baroclinic div.

    high frequency baroclinic div. barotropic

    baroclinic

    hor. divergence

  • Frequency-filtered thickness: Internal Wave Test Case

    Slide 15

    n  It works!

    n  Here lines show grid cells, for z-tilde vertical grid:

  • Frequency-filtered thickness: Internal Wave Test Case

    Slide 16

    n  Similar results for global simulations

    τ Dlf

    short time, high frequency oscillations change layer thickness

    long time, low frequency oscillations do not change layer thickness

    grid Reynolds number

    stronger z-tilde

    less vertical transport

    less mixing

    grid Reynolds number

    vertical transport through layer interface dRPE(t)

    dt

  • Slide 17

    MPAS-Ocean: Ice Shelf Above Ocean Surface

    n  For coupled ocean-ice shelf modeling, we need to depress the ocean surface with the weight of the ice shelf.

    image from Joughin ea. Science, 2012

    image from Jenkins ea. Science, 2010

    Observations: Pine Island Glacier

  • Slide 18

    MPAS-Ocean: Ice Shelf Above Ocean Surface

    n  For coupled ocean-ice shelf modeling, we need to depress the ocean surface with the weight of the ice shelf.

    140 km 30 km

    A: 100 m (varies)

    500 m

    500 m (varies)

    linear stratification in salinity, constant temperature

    Stop=34.5

    Sbot=34.7

    B: 15 km (varies)

    y

    z

    MPAS-Ocean model 22 layers, 50 m each

    30 km

    ice shelf, imposed by surface pressure

    Test 2: Driven Cavity

    surface wind stress of 0.1 N/m2

    cavity, S=34.3 throughout

    fixed slope

    varying slope

    250 m

  • Slide 19

    MPAS-Ocean: Ice Shelf Above Ocean Surface

    n  For coupled ocean-ice shelf modeling, we need to depress the ocean surface with the weight of the ice shelf.

    n  Ocean layers were compressed to 5 cm thickness with no negative effects.

    n  Sheer cliff face may be used at ice shelf edge.

    n  Tests used linear EOS. For nonlinear EOS, must account for sigma-coordinate correction.

    Initial salinity

    salinity, day 20

  • Slide 20

    The MPAS-Ocean Vertical Coordinate

    n  Z-Level

    n  Z-star

    n  sigma: only tested in idealized cases so far

    n  isopycnal: idealized only, no zero thickness layers

    n  hybrid isopycnal: under development

    n  partial bottom cells

    n  z-tilde: frequency-filtered coordinate