JVI02954-12 v2 Supplemental Material Tables S1-S8jvi.asm.org/content/suppl/2013/04/04/JVI.02954-12.DC...Supplemental Material 2 Table S1. VDPV2 isolates, Nigeria, 2005−2011 Emergence

1

Supplemental Material

2

Table S1. VDPV2 isolates, Nigeria, 2005−2011

Emergence

Isolate

Local Government Area

State

Date of onset

Date of specimen

GenBank accession number

2004-1a BAS05-01 Itas-Gadau Bauchi 02 Jul 2005 05 Jul 2005 JX274980b

2005-2 LAS05-01 Mushin Lagos 14 Jul 2005 22 Jul 2005 JX274981b 2005-1 SOS05-01 Illela Sokoto 29 Sep 2005 05 Oct 2005 JX274982b 2005-3 KDS05-01 Sabon-Gari Kaduna 23 Oct 2005 03 Nov 2005 JX274983b 2005-4 KBS06-01 Koko Besse Kebbi 08 Jan 2006 14 Jan 2006 JX274984b 2005-8 JIS06-01 Kiyawa Jigawa 07 May 2006 19 May 2006 JX274985b 2005-8 JIS06-02 Dutse Jigawa 12 May 2006 31 May 2006 JX274986

2005-7 BOS06-01 Konduga Borno 22 May 2006 31 May 2006 JX274987b 2004-1 JIS06-03 Gwaram Jigawa 26 May 2006 08 Jun 2006 JX274988

2004-1 KNS06-01 Gezawa Kano 26 May 2006 06 Jun 2006 JX274989

2005-8 KNS06-02 Gezawa Kano 29 May 2006 07 Jun 2006 JX274990

2006-1 BOS06-02 Maiduguri Borno 31 May 2006 15 Jun 2006 JX274991b 2005-8 KNS06-03 Gezawa Kano 05 Jun 2006 18 Jun 2006 JX274992

2005-9 JIS06-04 Yankwashi Jigawa 05 Jun 2006 15 Jun 2006 JX274993b 2005-8 KNS06-04 Wudil Kano 12 Jun 2006 21 Jun 2006 JX274994

2005-6 BOS06-03 Maiduguri Borno 15 Jun 2006 05 Jul 2006 JX274995b 2005-8 KNS06-05 Gezawa Kano 18 Jun 2006 20 Jun 2006 JX274996

2005-8 JIS06-05 Jahun Jigawa 21 Jun 2006 05 Jul 2006 JX274997

2005-8 KNS06-06 Gwale Kano 02 Jul 2006 03 Aug 2006 JX274998

2005-5 JIS06-06 Garki Jigawa 04 Jul 2006 17 Jul 2006 JX274999b 2005-8 KNS06-07 Kibiya Kano 11 Jul 2006 13 Jul 2006 JX275000

2005-8 KNS06-08 Warawa Kano 12 Jul 2006 18 Jul 2006 JX275001

2005-8 KDS06-01 Sabon-Gari Kaduna 16 Aug 2006 27 Aug 2006 JX275002

2005-6 BOS06-04 Maiduguri Borno 19 Aug 2006 23 Aug 2006 JX275003

2005-8 KNS06-09 Dala Kano 01 Sep 2006 16 Sep 2006 JX275004

2005-8 KNS06-10 Ajingi Kano 08 Sep 2006 16 Sep 2006 JX275005

2005-8 KNS06-11 Gwale Kano 12 Sep 2006 14 Sep 2006 JX275006

2005-8 KDS06-02 Zaria Kaduna 18 Sep 2006 20 Sep 2006 JX275007

2005-5 KTS06-01 Baure Katsina 19 Sep 2006 17 Oct 2006 JX275008

2005-8 KNS06-12 Kumbotso Kano 24 Sep 2006 06 Oct 2006 JX275009

2005-8 KNS06-13 Kura Kano 02 Oct 2006 10 Oct 2006 JX275010

2005-8 KDS06-03 Zaria Kaduna 14 Oct 2006 25 Oct 2006 JX275011

2005-8 KNS06-15 Nassarawa Kano 22 Oct 2006 27 Oct 2006 JX275012

2005-8 KNS06-14 Kabo Kano 22 Oct 2006 26 Oct 2006 JX275013

2005-8 KNS06-16 Fagge Kano 26 Oct 2006 04 Nov 2006 JX275014

2005-11 BAS06-01 Zaki Bauchi 02 Nov 2006 07 Nov 2006 JX275015b

3

Emergence

Isolate


State

Date of onset

Date of specimen


2005-8 KNS06-17 Bichi Kano 08 Nov 2006 14 Nov 2006 JX275016

2005-8 KNS06-18 Bunkure Kano 20 Nov 2006 29 Nov 2006 JX275017

2005-8 KNS06-19 Dawakin Tofa Kano 01 Dec 2006 06 Jan 2007 JX275018

2005-8 KNS06-20 Dawakin Kudu Kano 16 Dec 2006 22 Dec 2006 JX275019

2005-8 KNS06-21 Fagge Kano 19 Dec 2006 30 Dec 2006 JX275020

2005-8 KNS06-22 Garun Mallam Kano 21 Dec 2006 31 Dec 2006 JX275021

2005-8 KNS06-23 Garko Kano 28 Dec 2006 27 Jan 2007 JX275022

2005-8 KNS07-01 Madobi Kano 13 Jan 2007 16 Jan 2007 JX275023

2005-8 KNS07-02 Doguwa Kano 03 Feb 2007 07 Feb 2007 JX275024

2005-8 KNS07-03 Tarauni Kano 03 Feb 2007 14 Feb 2007 JX275025

2005-8 KNS07-04 Rogo Kano 09 Feb 2007 14 Feb 2007 JX275026

2005-8 KDS07-01 Soba Kaduna 10 Feb 2007 22 Feb 2007 JX275027

2005-8 KNS07-05 Wudil Kano 11 Feb 2007 21 Feb 2007 JX275028

2005-8 KNS07-06 Bichi Kano 14 Feb 2007 28 Feb 2007 JX275029

2005-8 KNS07-07 Doguwa Kano 16 Feb 2007 03 Mar 2007 JX275030

2005-8 KNS07-08 Madobi Kano 17 Feb 2007 21 Feb 2007 JX275031

2005-10 SOS07-01 Gada Sokoto 19 Feb 2007 26 Feb 2007 JX275032b 2005-6 BOS07-01 Damboa Borno 19 Feb 2007 04 Mar 2007 JX275033

2005-8 BAS07-01 Zaki Bauchi 22 Feb 2007 05 Mar 2007 JX275034

2005-8 KDS07-02 Makarfi Kaduna 27 Feb 2007 02 Mar 2007 JX275035

2005-8 ZAS07-01 Tsafe Zamfara 01 Mar 2007 12 Mar 2007 JX275036

2005-8 KDS07-03 Kudan Kaduna 03 Mar 2007 09 Mar 2007 JX275037

2005-8 KNS07-09 Rogo Kano 10 Mar 2007 16 Mar 2007 JX275038

2005-8 BAS07-02 Itas-Gadau Bauchi 16 Mar 2007 29 Mar 2007 JX275039

2005-8 KNS07-10 Dawakin Tofa Kano 19 Mar 2007 01 Apr 2007 JX275040

2005-8 KNS07-11 Rimin Gado Kano 01 Apr 2007 06 Apr 2007 JX275041

2005-8 KTS07-01 Zango Katsina 05 Apr 2007 09 Apr 2007 JX275042

2005-8 KTS07-02 Zango Katsina 10 Apr 2007 17 Apr 2007 JX275043

2005-8 KNS07-12 Tudun Wada Kano 18 Apr 2007 25 Apr 2007 JX275044

2005-8 JIS07-01 Birniwa Jigawa 19 Apr 2007 26 Apr 2007 JX275045

2005-8 KDS07-04 Ikara Kaduna 24 Apr 2007 07 May 2007 JX275046

2005-8 KNS07-13 Garko Kano 24 Apr 2007 01 May 2007 JX275047

2005-8 KBS07-01 Yauri Kebbi 01 May 2007 03 May 2007 JX275048

2005-8 KTS07-03 Malumfashi Katsina 01 May 2007 09 May 2007 JX275049

2005-8 KDS07-05 Soba Kaduna 04 May 2007 15 May 2007 JX275050

2005-8 KDS07-06 Kuban Kaduna 04 May 2007 16 May 2007 JX275051

2005-6 BOS07-02 Damboa Borno 10 May 2007 15 May 2007 JX275052

2005-8 KTS07-04 Charanchi Katsina 10 May 2007 19 May 2007 JX275053

4

Emergence

Isolate


State

Date of onset

Date of specimen


2005-8 KDS07-08 Kuban Kaduna 14 May 2007 03 Jun 2007 JX275054

2005-8 KDS07-07 Soba Kaduna 14 May 2007 24 May 2007 JX275055

2005-8 KNS07-14 Kiru Kano 16 May 2007 22 May 2007 JX275056

2005-6 JIS07-02 Kaugama Jigawa 19 May 2007 29 May 2007 JX275057

2005-8 KTS07-05 Safana Katsina 29 May 2007 01 Jun 2007 JX275058

2005-8 KNS07-15 Makoda Kano 03 Jun 2007 09 Jun 2007 JX275059

2005-8 KNS07-16 Fagge Kano 04 Jun 2007 15 Jun 2007 JX275060

2005-8 KNS07-17 Gwarzo Kano 11 Jun 2007 21 Jun 2007 JX275061

2005-8 KNS07-18 Kabo Kano 16 Jun 2007 28 Jun 2007 JX275062

2005-8 KTS07-06 Mani Katsina 19 Jun 2007 02 Jul 2007 JX275063

2005-8 KNS07-19 Dawakin Tofa Kano 20 Jun 2007 02 Jul 2007 JX275064

2005-8 KTS07-07 Dan-Musa Katsina 21 Jun 2007 26 Jun 2007 JX275065

2005-8 KTS07-08 Kankara Katsina 22 Jun 2007 25 Jun 2007 JX275066

2005-8 BAS07-03 Katagum Bauchi 25 Jun 2007 05 Jul 2007 JX275067

2005-8 KBS07-02 Jega Kebbi 01 Jul 2007 08 Jul 2007 JX275068

2005-8 BAS07-04 Gamawa Bauchi 12 Jul 2007 19 Jul 2007 JX275069

2005-8 KNS07-20 Tudun Wada Kano 12 Jul 2007 19 Jul 2007 JX275070

2007-1 NIS07-01 Wushishi Niger 14 Jul 2007 30 Jul 2007 JX275071b 2005-8 KNS07-21 Shanono Kano 27 Jul 2007 31 Jul 2007 JX275072

2005-8 JIS07-03 Miga Jigawa 29 Jul 2007 10 Aug 2007 JX275073

2005-8 KNS07-22 Kiru Kano 03 Aug 2007 07 Aug 2007 JX275074

2005-8 JIS07-04 Birniwa Jigawa 10 Aug 2007 18 Aug 2007 JX275075

2005-8 KNS07-23 Shanono Kano 10 Aug 2007 18 Aug 2007 JX275076

2005-8 KNS07-24 Dawakin Tofa Kano 17 Aug 2007 22 Aug 2007 JX275077

2005-8 KBS07-03 Suru Kebbi 25 Aug 2007 07 Sep 2007 JX275078

2005-8 ZAS07-02 Talata-Mafara Zamfara 08 Sep 2007 14 Sep 2007 JX275079

2005-8 KBS07-04 Aleiro Kebbi 25 Sep 2007 01 Oct 2007 JX275080

2005-8 KTS07-09 Katsina Katsina 25 Sep 2007 06 Oct 2007 JX275081

2005-8 KTS07-10 Ingawa Katsina 26 Sep 2007 04 Oct 2007 JX275082

2005-8 KNS07-25 Dawakin Kudu Kano 29 Sep 2007 03 Oct 2007 JX275083

2005-8 JIS07-05 Guri Jigawa 20 Oct 2007 30 Oct 2007 JX275084

2007-3 ANS07-01 Idemili South Anambra 22 Oct 2007 27 Oct 2007 JX275085b 2005-8 YBS07-01 Bursari Yobe 04 Nov 2007 11 Nov 2007 JX275086

2005-8 JIS07-06 Birniwa Jigawa 10 Nov 2007 19 Nov 2007 JX275087

2005-10 SOS07-02 Binji Sokoto 17 Nov 2007 25 Nov 2007 JX275088

2005-8 SOS07-03 Sokoto North Sokoto 17 Nov 2007 28 Nov 2007 JX275089

2005-8 KTS07-11 Batagarawa Katsina 18 Nov 2007 30 Nov 2007 JX275090

2005-8 SOS07-05 Tangaza Sokoto 19 Nov 2007 28 Nov 2007 JX275091

5

Emergence

Isolate


State

Date of onset

Date of specimen


2005-8 SOS07-04 Sokoto North Sokoto 19 Nov 2007 28 Nov 2007 JX275092

2005-8 ZAS07-03 Tsafe Zamfara 20 Nov 2007 29 Nov 2007 JX275093

2005-8 KNS07-26 Dala Kano 27 Nov 2007 03 Dec 2007 JX275094

2005-8 KNS07-27 Dambatta Kano 28 Nov 2007 08 Dec 2007 JX275095

2005-8 KNS07-28 Gwale Kano 28 Nov 2007 12 Dec 2007 JX275096

2005-8 KTS07-12 Kankia Katsina 10 Dec 2007 15 Dec 2007 JX275097

2005-8 BAS07-05 Itas-Gadau Bauchi 26 Dec 2007 04 Jan 2008 JX275098

2005-8 KTS08-01 Dutsinma Katsina 20 Jan 2008 30 Jan 2008 JX275099

2005-8 NIS08-01 Mgama Niger 22 Jan 2008 29 Jan 2008 JX275100

2005-6 BOS08-01 Mobbar Borno 28 Jan 2008 07 Feb 2008 JX275101

2005-8 KTS08-02 Katsina Katsina 30 Jan 2008 09 Feb 2008 JX275102

2005-8 KNS08-01 Shanono Kano 07 Feb 2008 16 Feb 2008 JX275103

2005-8 YBS08-01 Yunusari Yobe 07 Feb 2008 16 Feb 2008 JX275104

2005-8 NAS08-01 Nasarawa Nasarawa 08 Feb 2008 18 Feb 2008 JX275105

2005-8 BAS08-01 Zaki Bauchi 11 Feb 2008 22 Feb 2008 JX275106

2005-8 JIS08-01 Birniwa Jigawa 16 Feb 2008 27 Feb 2008 JX275107

2005-8 BAS08-02 Dambam Bauchi 27 Feb 2008 02 Mar 2008 JX275108

2005-8 NIS08-02 Mgama Niger 06 Mar 2008 15 Mar 2008 JX275109

2005-8 BAS08-03 Dambam Bauchi 10 Mar 2008 15 Mar 2008 JX275110

2005-8 NIS08-03 Mgama Niger 10 Mar 2008 19 Mar 2008 JX275111

2005-8 KNS08-02 Fagge Kano 21 Mar 2008 03 Apr 2008 JX275112

2005-8 BAS08-04 Dambam Bauchi 23 Mar 2008 29 Mar 2008 JX275113

2005-8 KTS08-03 Bindawa Katsina 24 Mar 2008 02 Apr 2008 JX275114

2005-8 SOS08-01 Sokoto South Sokoto 24 Mar 2008 09 Apr 2008 JX275115

2005-8 ZAS08-01 Bukkuyum Zamfara 25 Mar 2008 03 Apr 2008 JX275116

2005-8 NIS08-04 Mgama Niger 27 Mar 2008 02 Apr 2008 JX275117

2005-8 SOS08-02 Kware Sokoto 02 Apr 2008 07 Apr 2008 JX275118

2005-8 ZAS08-02 Gusau Zamfara 04 Apr 2008 17 Apr 2008 JX275119

2005-8 SOS08-03 Silame Sokoto 05 Apr 2008 15 Apr 2008 JX275120

2005-8 SOS08-04 Rabah Sokoto 09 Apr 2008 17 Apr 2008 JX275121

2005-8 YBS08-02 Bursari Yobe 11 Apr 2008 17 Apr 2008 JX275122

2005-8 JIS08-02 Kafin-Hausa Jigawa 18 Apr 2008 25 Apr 2008 JX275123

2005-8 KTS08-04 Bindawa Katsina 18 Apr 2008 26 Apr 2008 JX275124

2005-8 KTS08-05 Rimi Katsina 20 Apr 2008 26 Apr 2008 JX275125

2005-8 YBS08-03 Geidam Yobe 01 May 2008 05 May 2008 JX275126

2005-10 SOS08-05 Silame Sokoto 09 May 2008 16 May 2008 JX275127

2005-8 SOS08-06 Sabon Birni Sokoto 13 May 2008 21 May 2008 JX275128

2005-8 KBS08-01 Sakaba Kebbi 24 May 2008 02 Jun 2008 JX275129

6

Emergence

Isolate


State

Date of onset

Date of specimen


2005-8 KNS08-03 Dawakin Kudu Kano 06 Jun 2008 10 Jun 2008 JX275130

2005-8 BAS08-05 Darazo Bauchi 08 Jun 2008 19 Jun 2008 JX275131

2005-8 ZAS08-03 Tsafe Zamfara 13 Jun 2008 20 Jun 2008 JX275132

2005-8 SOS08-07 Bodinga Sokoto 22 Jun 2008 28 Jun 2008 JX275133

2005-8 ZAS08-04 Bukkuyum Zamfara 08 Jul 2008 15 Jul 2008 JX275134

2005-8 NIS08-05 Mariga Niger 10 Jul 2008 30 Jul 2008 JX275135

2005-8 JIS08-03 Gwiwa Jigawa 16 Jul 2008 30 Jul 2008 JX275136

2005-8 ZAS08-05 Tsafe Zamfara 20 Jul 2008 28 Jul 2008 JX275137

2005-8 JIS08-04 Auyo Jigawa 25 Jul 2008 31 Jul 2008 JX275138

2005-8 ZAS08-06 Bakura Zamfara 26 Jul 2008 07 Aug 2008 JX275139

2007-2 BAS08-06 Darazo Bauchi 29 Jul 2008 07 Aug 2008 JX275140b 2005-10 SOS08-08 Silame Sokoto 07 Aug 2008 19 Aug 2008 JX275141

2005-8 ZAS08-07 Bukkuyum Zamfara 10 Aug 2008 20 Aug 2008 JX275142

2005-8 YBS08-04 Bursari Yobe 11 Aug 2008 24 Aug 2008 JX275143

2005-8 YBS08-05 Bursari Yobe 12 Aug 2008 22 Aug 2008 JX275144

2005-8 BAS08-07 Katagum Bauchi 17 Aug 2008 24 Aug 2008 JX275145

2005-8 BOS08-02 Maiduguri Borno 20 Aug 2008 30 Aug 2008 JX275146

2006-2 SOS08-09 Bodinga Sokoto 22 Aug 2008 02 Sep 2008 JX275147b 2005-8 YBS08-06 Geidam Yobe 01 Sep 2008 05 Sep 2008 JX275148

2005-8 ZAS08-08 Bakura Zamfara 04 Sep 2008 12 Sep 2008 JX275149

2005-8 ZAS08-09 Bukkuyum Zamfara 13 Sep 2008 18 Sep 2008 JX275150

2005-8 ZAS08-10 Maradun Zamfara 29 Sep 2008 10 Oct 2008 JX275151

2005-8 ZAS08-11 Bukkuyum Zamfara 01 Oct 2008 08 Oct 2008 JX275152

2005-8 KBS08-02 Zuru Kebbi 05 Oct 2008 12 Oct 2008 JX275153

2005-8 JIS08-05 Kaugama Jigawa 17 Oct 2008 27 Oct 2008 JX275154

2005-8 NIS08-06 Mariga Niger 19 Oct 2008 02 Nov 2008 JX275155

2005-8 KGS08-01 Yagba West Kogi 20 Oct 2008 23 Oct 2008 JX275156

2005-8 BAS08-08 Bauchi Bauchi 28 Oct 2008 07 Nov 2008 JX275157

2005-8 ZAS08-12 Bukkuyum Zamfara 10 Nov 2008 16 Nov 2008 JX275158

2005-8 KNS08-04 Wudil Kano 12 Nov 2008 24 Nov 2008 JX275159

2005-8 ZAS08-13 Gummi Zamfara 15 Nov 2008 27 Nov 2008 JX275160

2005-8 ZAS08-14 Gummi Zamfara 15 Nov 2008 28 Nov 2008 JX275161

2007-4 KBS08-03 Suru Kebbi 18 Nov 2008 01 Dec 2008 JX275162b 2005-8 YBS08-07 Fune Yobe 27 Nov 2008 03 Dec 2008 JX275163

2005-10 ZAS08-15 Shinkafi Zamfara 26 Dec 2008 03 Jan 2009 JX275164

2005-8 KTS09-01 Sabuwa Katsina 14 Jan 2009 25 Jan 2009 JX275165

2005-8 KTS09-02 Maiadua Katsina 22 Jan 2009 02 Feb 2009 JX275166

2005-8 KNS09-01 Gabasawa Kano 24 Jan 2009 06 Feb 2009 JX275167

7

Emergence

Isolate


State

Date of onset

Date of specimen


2007-4 NIS09-01 Kontagora Niger 25 Jan 2009 30 Jan 2009 JX275168

2005-8 KNS09-02 Ungogo Kano 26 Jan 2009 18 Feb 2009 JX275169

2005-8 NIS09-02 Rijau Niger 27 Jan 2009 03 Feb 2009 JX275170

2005-8 ZAS09-02 Anka Zamfara 27 Jan 2009 07 Feb 2009 JX275171

2005-8 ZAS09-01 Bakura Zamfara 27 Jan 2009 05 Feb 2009 JX275172

2005-8 JIS09-01 Buji Jigawa 30 Jan 2009 12 Feb 2009 JX275173

2005-8 KBS09-01 Bagudo Kebbi 31 Jan 2009 09 Feb 2009 JX275174

2005-8 ZAS09-03 Bakura Zamfara 01 Feb 2009 04 Feb 2009 JX275175

2005-8 KTS09-03 Funtua Katsina 02 Feb 2009 10 Feb 2009 JX275176

2005-8 BOS09-01 Damboa Borno 03 Feb 2009 10 Feb 2009 JX275177

2005-8 KNS09-03 Nassarawa Kano 06 Feb 2009 11 Feb 2009 JX275178

2005-8 BAS09-01 Gamjuwa Bauchi 07 Feb 2009 12 Mar 2009 JX275179

2005-8 KNS09-04 Nassarawa Kano 07 Feb 2009 14 Feb 2009 JX275180

2005-8 KDS09-01 Giwa Kaduna 10 Feb 2009 16 Feb 2009 JX275181

2005-8 KNS09-05 Bagwai Kano 11 Feb 2009 16 Feb 2009 JX275182

2005-8 KTS09-04 Funtua Katsina 13 Feb 2009 24 Feb 2009 JX275183

2007-6 KTS09-05 Daura Katsina 17 Feb 2009 27 Feb 2009 JX275184b 2005-8 KNS09-06 Albasu Kano 18 Feb 2009 28 Feb 2009 JX275185

2005-8 KTS09-06 Musawa Katsina 18 Feb 2009 01 Mar 2009 JX275186

2005-8 JIS09-02 Birnin-Kudu Jigawa 19 Feb 2009 26 Feb 2009 JX275187

2005-8 YBS09-01 Gujba Yobe 19 Feb 2009 01 Mar 2009 JX275188

2005-8 BOS09-02 Bayo Borno 21 Feb 2009 05 Mar 2009 JX275189

2005-8 JIS09-03 Kazaure Jigawa 24 Feb 2009 04 Mar 2009 JX275190

2005-10 ZAS09-05 Maru Zamfara 25 Feb 2009 05 Mar 2009 JX275191

2005-8 JIS09-04 Kiri-Kasamma Jigawa 25 Feb 2009 06 Mar 2009 JX275192

2005-8 ZAS09-04 Bungudu Zamfara 25 Feb 2009 02 Mar 2009 JX275193

2005-8 BOS09-03 Damboa Borno 02 Mar 2009 05 Mar 2009 JX275194

2005-8 KTS09-07 Sandamu Katsina 04 Mar 2009 16 Mar 2009 JX275195

2005-8 KNS09-07 Sumaila Kano 06 Mar 2009 10 Mar 2009 JX275196

2005-8 KNS09-08 Dambatta Kano 06 Mar 2009 18 Mar 2009 JX275197

2005-8 KNS09-09 Takai Kano 07 Mar 2009 18 Mar 2009 JX275198

2005-8 BOS09-04 Damboa Borno 08 Mar 2009 15 Mar 2009 JX275199

2005-8 YBS09-02 Machina Yobe 08 Mar 2009 21 Mar 2009 JX275200

2005-8 KBS09-02 Kalgo Kebbi 11 Mar 2009 20 Mar 2009 JX275201

2005-8 KNS09-10 Dawakin Kudu Kano 15 Mar 2009 19 Mar 2009 JX275202

2007-4 SOS09-01 Gada Sokoto 15 Mar 2009 20 Mar 2009 JX275203

2005-8 JIS09-05 Birnin-Kudu Jigawa 16 Mar 2009 27 Mar 2009 JX275204

2005-8 KTS09-08 Dandume Katsina 17 Mar 2009 25 Mar 2009 JX275205

8

Emergence

Isolate


State

Date of onset

Date of specimen


2005-8 KDS09-02 Igabi Kaduna 18 Mar 2009 24 Mar 2009 JX275206

2005-8 NIS09-03 Mariga Niger 18 Mar 2009 28 Mar 2009 JX275207

2007-4 KBS09-03 Gwandu Kebbi 18 Mar 2009 27 Mar 2009 JX275208

2005-8 KDS09-03 Kaduna North Kaduna 19 Mar 2009 26 Mar 2009 JX275209

2005-8 KTS09-09 Kurfi Katsina 20 Mar 2009 28 Mar 2009 JX275210

2005-8 YBS09-03 Machina Yobe 20 Mar 2009 03 Apr 2009 JX275211

2005-8 KNS09-11 Rimin Gado Kano 23 Mar 2009 25 Mar 2009 JX275212

2005-8 SOS09-02 Kebbe Sokoto 23 Mar 2009 30 Mar 2009 JX275213

2005-8 JIS09-06 Kiyawa Jigawa 24 Mar 2009 31 Mar 2009 JX275214

2005-8 JIS09-07 Birnin-Kudu Jigawa 24 Mar 2009 02 Apr 2009 JX275215

2005-8 KTS09-10 Dandume Katsina 24 Mar 2009 30 Mar 2009 JX275216

2005-8 KTS09-11 Kankia Katsina 25 Mar 2009 06 Apr 2009 JX275217

2005-8 ZAS09-06 Bungudu Zamfara 25 Mar 2009 05 Apr 2009 JX275218

2005-8 ZAS09-07 Bungudu Zamfara 27 Mar 2009 03 Apr 2009 JX275219

2005-8 KNS09-12 Ungogo Kano 29 Mar 2009 06 Apr 2009 JX275220

2005-8 KNS09-13 Bichi Kano 01 Apr 2009 05 Apr 2009 JX275221

2005-8 NIS09-04 Mariga Niger 03 Apr 2009 13 Apr 2009 JX275222

2005-8 NIS09-05 Rijau Niger 06 Apr 2009 14 Apr 2009 JX275223

2005-8 SOS09-03 Kebbe Sokoto 06 Apr 2009 14 Apr 2009 JX275224


2005-8 ZAS09-08 Bukkuyum Zamfara 09 Apr 2009 13 Apr 2009 JX275226

2005-8 KTS09-12 Dutsi Katsina 10 Apr 2009 03 May 2009 JX275227

2005-8 NIS09-07 Rijau Niger 10 Apr 2009 19 Apr 2009 JX275228

2005-8 KDS09-04 Soba Kaduna 12 Apr 2009 24 Apr 2009 JX275229


2005-8 ZAS09-09 Maru Zamfara 12 Apr 2009 22 Apr 2009 JX275231

2005-8 KTS09-13 Batagarawa Katsina 13 Apr 2009 21 Apr 2009 JX275232

2005-8 KNS09-14 Tarauni Kano 14 Apr 2009 25 Apr 2009 JX275233

2005-8 BOS09-05 Jere Borno 15 Apr 2009 19 Apr 2009 JX275234

2005-8 ZAS09-10 Zurmi Zamfara 15 Apr 2009 19 Apr 2009 JX275235

2005-8 ZAS09-11 Talata-Mafara Zamfara 16 Apr 2009 21 Apr 2009 JX275236

2005-8 KDS09-05 Kaduna North Kaduna 17 Apr 2009 21 Apr 2009 JX275237

2007-5 BOS09-06 Damboa Borno 17 Apr 2009 20 Apr 2009 JX275238b 2005-8 KDS09-06 Soba Kaduna 18 Apr 2009 30 Apr 2009 JX275239

2005-8 KNS09-15 Nassarawa Kano 19 Apr 2009 23 Apr 2009 JX275240

2005-8 KNS09-16 Bunkure Kano 19 Apr 2009 24 Apr 2009 JX275241

2005-8 KNS09-17 Dawakin Tofa Kano 20 Apr 2009 01 May 2009 JX275242

2005-8 ZAS09-12 Gusau Zamfara 20 Apr 2009 02 May 2009 JX275243

9

Emergence

Isolate


State

Date of onset

Date of specimen


2005-8 JIS09-08 Jahun Jigawa 21 Apr 2009 27 Apr 2009 JX275244

2005-8 BOS09-07 Damboa Borno 22 Apr 2009 30 Apr 2009 JX275245

2005-8 JIS09-09 Jahun Jigawa 25 Apr 2009 01 May 2009 JX275246

2005-8 KNS09-19 Bunkure Kano 25 Apr 2009 30 Apr 2009 JX275247

2005-8 KNS09-18 Tudun Wada Kano 25 Apr 2009 28 Apr 2009 JX275248

2005-8 KNS09-20 Shanono Kano 26 Apr 2009 27 Apr 2009 JX275249

2005-8 KTS09-14 Malumfashi Katsina 26 Apr 2009 30 Apr 2009 JX275250

2005-8 KTS09-15 Bakori Katsina 28 Apr 2009 02 May 2009 JX275251

2005-8 JIS09-10 Ringim Jigawa 29 Apr 2009 08 May 2009 JX275252

2005-8 BOS09-08 Damboa Borno 01 May 2009 10 May 2009 JX275253

2005-8 ZAS09-13 Zurmi Zamfara 02 May 2009 08 May 2009 JX275254

2005-8 BNS09-01 Guma Benue 08 May 2009 14 May 2009 JX275255

2005-8 ZAS09-14 Kaura-Namoda Zamfara 09 May 2009 20 May 2009 JX275256

2005-8 KDS09-07 Giwa Kaduna 10 May 2009 13 May 2009 JX275257

2005-8 KNS09-21 Gezawa Kano 10 May 2009 15 May 2009 JX275258

2005-8 KNS09-22 Bichi Kano 10 May 2009 15 May 2009 JX275259

2005-8 KNS09-25 Nassarawa Kano 10 May 2009 31 May 2009 JX275260

2005-8 KNS09-24 Dawakin Tofa Kano 10 May 2009 21 May 2009 JX275261

2005-8 KNS09-23 Gaya Kano 10 May 2009 20 May 2009 JX275262

2005-8 KNS09-26 Nassarawa Kano 14 May 2009 22 May 2009 JX275263

2005-8 KTS09-16 Dan-Musa Katsina 14 May 2009 20 May 2009 JX275264

2005-8 ZAS09-15 Bakura Zamfara 14 May 2009 19 May 2009 JX275265

2005-8 KNS09-27 Dawakin Tofa Kano 15 May 2009 18 May 2009 JX275266

2005-8 ZAS09-16 Talata-Mafara Zamfara 15 May 2009 19 May 2009 JX275267

2005-8 ZAS09-17 Bukkuyum Zamfara 15 May 2009 19 May 2009 JX275268

2008-1 KDS09-08 Zaria Kaduna 15 May 2009 05 Jun 2009 JX275269b 2005-8 JIS09-11 Hadejia Jigawa 16 May 2009 28 May 2009 JX275270

2005-8 KDS09-09 Kaduna South Kaduna 16 May 2009 29 May 2009 JX275271

2005-8 KNS09-28 Dala Kano 16 May 2009 23 May 2009 JX275272

2005-8 KTS09-17 Funtua Katsina 19 May 2009 28 May 2009 JX275273

2007-5 BOS09-09 Ngala Borno 19 May 2009 02 Jun 2009 JX275274

2005-8 KTS09-18 Jibia Katsina 21 May 2009 01 Jun 2009 JX275275

2005-8 KTS09-19 Katsina Katsina 21 May 2009 03 Jun 2009 JX275276

2005-8 KDS09-10 Zaria Kaduna 23 May 2009 01 Jun 2009 JX275277

2005-8 ZAS09-18 Birnin-Magaji Zamfara 24 May 2009 02 Jun 2009 JX275278

2005-8 KNS09-29 Shanono Kano 25 May 2009 01 Jun 2009 JX275279

2005-8 YBS09-04 Gulani Yobe 26 May 2009 03 Jun 2009 JX275280

2005-8 KNS09-30 Bunkure Kano 27 May 2009 04 Jun 2009 JX275281

10

Emergence

Isolate


State

Date of onset

Date of specimen


2005-8 NIS09-09 Kontagora Niger 29 May 2009 03 Jun 2009 JX275282

2005-8 NIS09-10 Mariga Niger 29 May 2009 06 Jun 2009 JX275283

2005-8 ADS09-01 Song Adamawa 01 Jun 2009 03 Jun 2009 JX275284

2005-8 KTS09-20 Mashi Katsina 02 Jun 2009 08 Jun 2009 JX275285

2005-8 KTS09-21 Kafur Katsina 03 Jun 2009 09 Jul 2009 JX275286

2005-8 BOS09-10 Gwoza Borno 08 Jun 2009 11 Jun 2009 JX275287

2005-8 KTS09-22 Ingawa Katsina 10 Jun 2009 08 Apr 2009 JX275288

2005-8 KTS09-23 Jibia Katsina 10 Jun 2009 12 Jun 2009 JX275289

2005-8 NAS09-01 Kokona Nasarawa 10 Jun 2009 22 Jun 2009 JX275290

2005-8 KDS09-11 Ikara Kaduna 11 Jun 2009 23 Jun 2009 JX275291

2007-4 SOS09-04 Sabon Birni Sokoto 11 Jun 2009 22 Jun 2009 JX275292

2005-8 KTS09-24 Mani Katsina 12 Jun 2009 23 Jun 2009 JX275293

2005-8 YBS09-05 Gujba Yobe 14 Jun 2009 24 Jun 2009 JX275294

2005-8 ZAS09-19 Tsafe Zamfara 15 Jun 2009 24 Jun 2009 JX275295

2005-8 KTS09-25 Nie-Batsari Katsina 16 Jun 2009 27 Jun 2009 JX275296

2005-8 KTS09-26 Jibia Katsina 19 Jun 2009 26 Jun 2009 JX275297

2005-8 KNS09-31 Madobi Kano 21 Jun 2009 07 Jul 2009 JX275298

2005-8 KTS09-27 Katsina Katsina 22 Jun 2009 26 Jun 2009 JX275299

2005-8 KNS09-32 Sumaila Kano 24 Jun 2009 03 Jul 2009 JX275300

2005-8 KNS09-33 Tofa Kano 26 Jun 2009 02 Jul 2009 JX275301

2005-8 KNS09-34 Kabo Kano 26 Jun 2009 05 Jul 2009 JX275302

2005-8 NAS09-02 Karu Nasarawa 27 Jun 2009 08 Jul 2009 JX275303

2005-8 KTS09-28 Bakori Katsina 28 Jun 2009 11 Jul 2009 JX275304

2005-8 KDS09-12 Kagarko Kaduna 30 Jun 2009 03 Jul 2009 JX275305

2005-8 KNS09-35 Dawakin Kudu Kano 30 Jun 2009 06 Jul 2009 JX275306

2005-8 KTS09-29 Katsina Katsina 02 Jul 2009 15 Jul 2009 JX275307

2005-8 KNS09-36 Dala Kano 03 Jul 2009 07 Jul 2009 JX275308

2005-8 KNS09-37 Bunkure Kano 18 Jul 2009 14 Aug 2009 JX275309

2005-8 NAS09-03 Kokona Nasarawa 26 Jul 2009 01 Aug 2009 JX275310

2005-8 NAS09-04 Lafia Nasarawa 29 Jul 2009 07 Aug 2009 JX275311

2005-8 JIS09-12 Buji Jigawa 06 Aug 2009 19 Aug 2009 JX275312

2005-8 KDS09-13 Zaria Kaduna 16 Aug 2009 26 Aug 2009 JX275313

2005-8 SOS09-05 Wurno Sokoto 22 Aug 2009 01 Sep 2009 JX275314

2005-8 KTS09-30 Zango Katsina 26 Aug 2009 05 Sep 2009 JX275315

2005-8 KTS09-31 Batagarawa Katsina 03 Oct 2009 07 Oct 2009 JX275316

2005-8 PLS09-01 Jos North Plateau 07 Oct 2009 14 Oct 2009 JX275317

2005-8 KNS09-38 Gwarzo Kano 23 Oct 2009 03 Nov 2009 JX275318

2005-8 KTS09-32 Mashi Katsina 12 Nov 2009 01 Dec 2009 JX275319

11

Emergence

Isolate


State

Date of onset

Date of specimen


2005-8 KNS09-39 Rano Kano 10 Dec 2009 18 Dec 2009 JX275320

2005-8 KNS10-01 Dawakin Kudu Kano 17 Feb 2010 02 Mar 2010 JX275321

2007-4 SOS10-01 Bodinga Sokoto 03 Mar 2010 11 Mar 2010 JX275322

2005-8 ZAS10-01 Zurmi Zamfara 15 Mar 2010 23 Mar 2010 JX275323

2005-8 BOS10-01 Maiduguri Borno 04 Apr 2010 10 Apr 2010 JX275324

2005-8 KDS10-01 Kuban Kaduna 16 Apr 2010 23 Apr 2010 JX275325

2005-8 BOS10-02 Nganzai Borno 22 Apr 2010 25 Apr 2010 JX275326

2005-8 KNS10-02 Madobi Kano 11 May 2010 17 May 2010 JX275327

2007-4 SOS10-02 Illela Sokoto 18 May 2010 25 May 2010 JX275328

2005-8 KBS10-01 Augie Kebbi 21 May 2010 06 Jun 2010 JX275329

2005-8 KNS10-03 Kura Kano 04 Jul 2010 11 Jul 2010 JX275330

2005-8 KNS10-04 Gaya Kano 26 Jul 2010 04 Aug 2010 JX275331

2005-8 KNS10-05 Karaye Kano 11 Aug 2010 24 Aug 2010 JX275332

2005-8 YBS10-01 Yusufari Yobe 11 Aug 2010 26 Aug 2010 JX275333

2005-8 JIS10-01 Guri Jigawa 20 Aug 2010 26 Aug 2010 JX275334

2005-8 KNS10-06 Wudil Kano 23 Aug 2010 02 Sep 2010 JX275335

2005-8 KDS10-02 Kuban Kaduna 26 Aug 2010 07 Sep 2010 JX275336

2005-8 KNS10-07 Ajingi Kano 30 Aug 2010 29 Sep 2010 JX275337

2005-8 KNS10-08 Gwarzo Kano 10 Sep 2010 21 Sep 2010 JX275338

2005-8 KDS10-03 Makarfi Kaduna 05 Oct 2010 19 Oct 2010 JX275339

2005-8 KDS10-04 Ikara Kaduna 08 Oct 2010 18 Oct 2010 JX275340

2005-8 KBS10-02 Kalgo Kebbi 09 Oct 2010 13 Oct 2010 JX275341

2005-8 KBS10-03 Kalgo Kebbi 30 Oct 2010 04 Nov 2010 JX275342

2005-8 KDS10-05 Makarfi Kaduna 09 Nov 2010 26 Nov 2010 JX275343

2005-8 KNS10-09 Gezawa Kano 16 Nov 2010 24 Nov 2010 JX275344

2005-8 KNS10-10 Dawakin Tofa Kano 23 Nov 2010 02 Dec 2010 JX275345

2005-8 KNS10-11 Kabo Kano 16 Dec 2010 23 Dec 2010 JX275346

2005-8 SOS11-01 Gwadabawa Sokoto 21 Dec 2010 16 Jan 2011 JX275347

2005-8 ZAS11-01 Talata-Mafara Zamfara 25 Jan 2011 04 Feb 2011 JX275348

2005-8 BOS11-01 Marte Borno 07 Feb 2011 13 Feb 2011 JX275349

2005-8 KNS11-01 Gezawa Kano 14 Feb 2011 20 Feb 2011 JX275350

2005-8 JIS11-01 Kafin-Hausa Jigawa 15 Feb 2011 25 Feb 2011 JX275351

2010-1 KBS11-01 Aleiro Kebbi 15 Feb 2011 22 Feb 2011 JX275352b 2005-8 BOS11-02 Mobbar Borno 02 Mar 2011 10 Mar 2011 JX275353

2005-8 JIS11-02 Kiri-Kasamma Jigawa 07 Mar 2011 17 Mar 2011 JX275354

2005-8 KNS11-02 Tofa Kano 15 May 2011 24 May 2011 JX275355

2005-8 KNS11-03 Dawakin Tofa Kano 16 May 2011 08 Jun 2011 JX275356

2005-8 KNS11-04 Bichi Kano 18 May 2011 18 May 2011 JX275357

12

Emergence

Isolate


State

Date of onset

Date of specimen


2005-8 YBS11-01 Gujba Yobe 18 May 2011 30 May 2011 JX275358

2005-8 JIS11-03 Dutse Jigawa 02 Jun 2011 12 Jun 2011 JX275359

2005-8 JIS11-04 Yankwashi Jigawa 21 Jun 2011 26 Jun 2011 JX275360

2005-8 KNS11-05 Fagge Kano 28 Jun 2011 04 Jul 2011 JX275361

2005-8 KNS11-06 Bagwai Kano 17 Jul 2011 28 Jul 2011 JX275362

2005-8 JIS11-05 Miga Jigawa 23 Jul 2011 02 Aug 2011 JX275363

2005-8 KNS11-07 Gabasawa Kano 10 Aug 2011 19 Aug 2011 JX275364

2005-8 JIS11-06 Babura Jigawa 11 Aug 2011 17 Aug 2011 JX275365

2005-8 KTS11-01 Mani Katsina 12 Aug 2011 21 Aug 2011 JX275366

2005-8 JIS11-07 Ringim Jigawa 14 Aug 2011 26 Aug 2011 JX275367

2005-8 JIS11-08 Gumel Jigawa 16 Sep 2011 25 Sep 2011 JX275368

2005-8 JIS11-09 Yankwashi Jigawa 17 Sep 2011 26 Sep 2011 JX275369

2005-8 KNS11-08 Kabo Kano 20 Sep 2011 28 Sep 2011 JX275370

2005-8 JIS11-10 Birnin Kudu Jigawa 29 Sep 2011 11 Oct 2011 JX275371

2005-8 KNS11-09 Gwale Kano 12 Oct 2011 14 Oct 2011 JX275372

2005-8 JIS11-11 Yankwashi Jigawa 15 Oct 2011 24 Oct 2011 JX275373

2005-8 JIS11-12 Roni Jigawa 16 Oct 2011 21 Oct 2011 JX275374

2005-8 PLS11-01 Shendam Plateau 19 Oct 2011 25 Nov 2011 JX275375

2005-8 JIS11-13 Babura Jigawa 20 Oct 2011 27 Oct 2011 JX275376

2005-8 JIS11-14 Birnin-Kudu Jigawa 04 Nov 2011 16 Nov 2011 JX275377

2005-8 BOS11-03 Mobbar Borno 06 Nov 2011 13 Nov 2011 JX275378

2005-8 BAS11-01 Ningi Bauchi 07 Nov 2011 17 Nov 2011 JX275379

2010-2 NIS11-01 Bida Niger 12 Nov 2011 22 Nov 2011 JX275380b 2005-8 KTS11-02 Batsari Katsina 19 Nov 2011 29 Nov 2011 JX275381

2005-8 ZAS11-02 Shinkafi Zamfara 06 Dec 2011 17 Dec 2011 JX275382

a Well-defined cVDPV2 lineage groups are indicated by bold font.

b Complete or nearly complete genomic sequences submitted to GenBank.

13

Table S2. Nucleotide differences in P1/capsid region among isolates of cVDPV2 lineage group 2004-1a

Virus/Isolate S 1 2 3

S [Sabin2] – – – –

1 BAS05-01 20 – 0.34 0.34

2 KNS06-01 45 43 – 0.69

3 JIS06-03 50 46 29 –

a For Tables S2 to S8: below diagonal, pairwise P1/capsid regions nt differences; above

diagonal, proportion of P1/capsid region nt differences from Sabin 2 that were shared among isolates (Sabin 2 is enclosed in brackets to distinguish it from the clinical isolates). The codon for amino acid VP1143 was excluded.

Table S3. Nucleotide differences in P1/capsid region among isolates of cVDPV2 lineage group 2005-5

Virus/Isolate S 1 2

S [Sabin 2] – – – 1 JIS06-06 27 – 0.11

2 KTS06-01 28 49 –


Virus/Isolate S 1 2 3 4 5 6

S [Sabin 2] – – – – – – –

1 BOS06-03 18 – 0.34 0.23 0.25 0.21 0.27

2 BOS06-04 23 27 – 0.51 0.21 0.49 0.15

3 BOS07-01 44 48 33 – 0.22 0.56 0.16

4 BOS07-02 45 47 54 69 – 0.19 0.15

5 JIS07-02 49 53 37 41 76 – 0.13

6 BOS08-01 65 61 75 92 93 99 –

14


Virus/Isolate S 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15

S [Sabin 2] – – – – – – – – – – – – – – – –

1 JIS06-01 33 – 0.61 0.50 0.51 0.46 0.47 0.39 0.38 0.37 0.33 0.31 0.30 0.31 0.28 0.29

2 KNS06-07 44 30 – 0.74 0.67 0.64 0.55 0.55 0.53 0.50 0.44 0.44 0.45 0.43 0.37 0.40

3 KNS07-05 57 45 25 – 0.57 0.48 0.47 0.48 0.47 0.46 0.43 0.39 0.44 0.41 0.34 0.38

4 KNS07-14 63 47 28 44 – 0.66 0.63 0.69 0.66 0.63 0.55 0.42 0.58 0.56 0.52 0.52

5 JIS07-06 72 57 38 54 24 – 0.37 0.70 0.67 0.64 0.58 0.38 0.60 0.57 0.52 0.53

6 YBS08-01 76 58 43 57 33 37 – 0.66 0.66 0.64 0.55 0.37 0.58 0.57 0.51 0.52

7 JIS08-03 94 77 62 78 48 49 57 – 0.71 0.70 0.61 0.34 0.53 0.53 0.48 0.57

8 KTS09-06 97 81 66 82 54 56 59 55 – 0.95 0.85 0.38 0.53 0.54 0.49 0.77

9 KTS09-10 105 87 74 88 62 64 65 59 10 – 0.84 0.36 0.50 0.52 0.47 0.76

10 KNS10-01 126 106 95 105 85 83 90 85 33 37 – 0.33 0.46 0.49 0.44 0.75

11 KNS10-03 119 105 91 108 106 118 122 140 135 143 163 – 0.37 0.35 0.31 0.31

12 ZAS10-01 119 106 89 99 76 77 82 101 101 111 132 151 – 0.48 0.43 0.44

13 KBS10-01 127 110 97 109 84 85 88 103 103 111 128 160 128 – 0.29 0.28

14 YBS10-01 135 121 112 126 96 100 103 118 120 128 145 176 145 187 – 0.45

15 KNS10-11 144 125 112 124 100 102 105 102 55 61 68 147 181 196 153 –


Virus/Isolate S 1 2 3 4 5 6

S [Sabin 2] – – – – – – –

1 SOS07-01 26 – 0.35 0.24 0.23 0.27 0.30

2 SOS07-02 56 53 – 0.23 0.22 0.22 0.25

3 SOS08-05 76 78 102 – 0.87 0.21 0.23

4 SOS08-08 80 82 106 21 – 0.19 0.19

5 ZAS08-15 84 80 109 127 133 – 0.80

6 ZAS09-05 82 76 103 121 131 34 –

15


Virus/Isolate S 1 4 3 2 5 6 7

S [Sabin2] – – – – – – – –

1 KBS08-03 29 – 0.21 0.23 0.23 0.19 0.22 0.21

4 KBS09-03 27 44 – 0.17 0.15 0.31 0.15 0.14

3 SOS09-01 50 61 64 – 0.75 0.18 0.13 0.13

2 NIS09-01 57 66 71 27 – 0.17 0.14 0.12

5 SOS09-04 44 59 49 77 84 – 0.14 0.13

6 SOS10-01 54 65 69 91 96 84 – 0.37

7 SOS10-02 66 75 80 101 108 96 76 –


Virus/Isolate S 1 2

S [Sabin 2] – – – 1 BOS09-06 42 – 0.31

2 BOS09-09 41 57 –

16


Virus/Isolate S 1 4 3 2 5 6 7

S Sabin2 – – – – – – – –

1 KBS08-03 29 – 0.21 0.23 0.23 0.19 0.22 0.21

4 KBS09-03 27 44 – 0.17 0.15 0.31 0.15 0.14

3 SOS09-01 50 61 64 – 0.75 0.18 0.13 0.13

2 NIS09-01 57 66 71 27 – 0.17 0.14 0.12

5 SOS09-04 44 59 49 77 84 – 0.14 0.13

6 SOS10-01 54 65 69 91 96 84 – 0.37

7 SOS10-02 66 75 80 101 108 96 76 –


Virus/Isolate S 1 2

S Sabin 2 – – – 1 BOS09-06 42 – 0.31

2 BOS09-09 41 57 –

2005.5 2006.0 2006.5 2007.0 2007.5 2008.0 2008.5

BOS07-02

BOS06-04

BOS07-01

BOS06-03

JIS07-02

BOS08-01

2006.43

2006.19

2006.09

2006.29

2006.69

Jaume Jorba

Jaume Jorba

*

Jaume Jorba

2005.0 2006.0 2007.0 2008.0 2009.0 2010.0 2011.0 2012.0

BOS09-04

ZAS09-17

KNS09-08

KTS09-24

KNS06-04

KNS07-25

KTS09-27

KNS06-19

BAS08-03

BOS09-03

ZAS08-12

KNS08-04

KNS07-09

YBS11-01

PLS11-01

NAS09-04

ZAS09-04

KNS07-21

BAS07-02

KNS10-01

KNS06-08

KTS07-03

KDS09-01

JIS09-02

BAS07-05

JIS11-03

KNS09-19

KNS09-20

KNS09-32

JIS11-02

KTS09-04

ZAS09-16

KDS07-02ZAS07-03

KTS07-10

SOS08-07

BAS08-02

ZAS08-13

KNS09-28

KBS09-01

KDS10-03

KNS06-07

KNS11-05

KNS07-13

ZAS08-10

JIS09-11

YBS09-01

ZAS08-09

JIS08-04

KNS07-04

ZAS09-07

KDS10-02

KNS07-20

JIS11-06

KNS06-09

KTS09-08

ZAS09-02

ZAS09-12

KNS07-08

KNS09-30

KNS07-03

KNS09-26

JIS11-10

KNS11-01

KTS08-05

SOS07-05

KDS09-11

JIS09-06

KBS09-02

BAS09-01

ZAS08-05

KNS09-15

ZAS08-07

KNS07-17

JIS11-14

KBS07-03

KTS07-07

KTS09-17

KNS07-27

KNS11-07

JIS08-03

BOS10-01

KDS09-12

KTS07-02

ZAS08-11

KNS09-17

BAS08-05

BAS11-01

KTS09-11

KNS07-07

YBS08-01

KNS09-05

KNS09-39

KNS07-11

KNS09-16

NIS08-06

KNS07-10

ZAS09-09

KNS09-18

YBS09-02

JIS11-11

KTS09-10

KNS07-12

ZAS09-14

JIS07-06

NIS08-03

KNS06-12

JIS11-13

KNS09-06

KTS09-16

JIS07-04

NIS09-05

KTS11-02

SOS08-02

KTS11-01

JIS07-01

KNS10-03

BOS08-02

KDS09-02

KNS11-06

KDS10-05

KNS10-08

KTS09-26

BAS07-04

KNS09-23

KTS09-15

SOS09-03

KNS09-24

ZAS09-06

KNS09-21

JIS07-05

SOS08-01

KNS06-16

KNS06-03

KDS06-01

KNS09-01

YBS09-03

JIS10-01

ZAS11-02

BAS08-04

NAS09-02

ADS09-01

KNS06-05

KBS07-01

NAS09-01

KTS09-09

KDS07-01

KTS09-07

ZAS08-14

BAS08-08

KDS07-07

KNS09-09

ZAS08-04

YBS08-05

JIS06-02

KNS06-22

ZAS08-06

BOS11-01

KNS09-04

KDS09-05

KNS09-38

KNS10-04

KDS07-08

KNS08-03

BOS09-05

BOS10-02

KBS07-02

KNS09-33

NIS09-07

KTS07-11

NIS08-02

JIS09-01

KDS09-09

KDS09-03

KNS07-15

BAS07-03

KNS10-07

KBS10-01

ZAS08-08

YBS08-02

BAS08-01

JIS09-12

KNS11-09

NIS09-10

ZAS09-03

KNS09-12

KDS10-01

KTS09-02

JIS08-05

PLS09-01

KNS07-14

JIS08-02

ZAS08-01

KTS09-12

KNS09-22

ZAS07-01

NIS09-02

KTS08-02

KDS09-04

SOS08-06

KDS09-13

KDS07-06

ZAS09-01

KNS06-13

KNS07-26

KDS09-06

NAS08-01

BOS11-03

JIS11-01

KTS07-09

KNS10-05

BAS08-07

YBS08-03

KDS09-07

KNS06-14

KNS10-11

BOS09-08

KNS10-10

NAS09-03

JIS09-09

KNS09-34

KGS08-01

KNS06-17

JIS07-03

SOS08-03

KNS07-22

KTS08-04

JIS11-12

JIS09-10

KNS09-03

KTS09-19

KBS08-02

ZAS09-08

KTS07-04

KNS09-14

KBS10-02

KNS09-36

NIS09-04

KTS09-18

YBS09-05

KDS07-04

YBS08-07

NIS09-03

KNS11-03

KTS09-25

BAS07-01

KDS06-03

KNS11-02

ZAS09-10

KNS09-25

SOS09-05

KNS07-19

KDS07-05

BOS09-01

JIS11-07

KTS09-28

KBS07-04

SOS08-04

KNS06-11

NIS09-08

KTS09-30

YBS07-01

ZAS08-02

JIS09-04

KTS08-01

KTS07-08

KTS09-22

KNS09-11

KTS09-32

KTS08-03

JIS11-04

YBS10-01

KTS09-01

BOS11-02

KNS07-02

KNS07-18

KTS09-31

NIS09-06

JIS09-07

ZAS09-13

JIS09-03

KNS09-29

KTS09-21

KTS09-29

ZAS08-03

KNS09-02

ZAS09-15

KNS06-21

BNS09-01

KNS06-15

KNS09-07

ZAS11-01

BOS09-10

KTS09-23

JIS09-08

KNS07-24

KBS08-01

KNS11-08

KNS07-01

KBS10-03

KDS10-04

KTS07-01

KNS09-37

KTS09-13

KNS06-02

KNS06-18

KDS06-02

KNS09-10

ZAS07-02

KNS09-27

KNS06-20

KNS09-31

KTS09-14

YBS08-06

JIS11-05

KTS09-06

KNS07-28

KTS07-12

KNS07-16

SOS11-01

KNS06-23

KNS11-04

BOS09-07

KTS09-20

YBS08-04

NIS08-04

KNS10-09

KTS09-03

KNS08-01

KDS09-10KNS10-02

JIS11-09

NIS08-05

SOS07-04

KNS07-06

SOS07-03

KTS07-06

JIS06-01

NIS09-09

KNS06-10

JIS09-05

JIS08-01

KNS06-06

KNS08-02

KNS09-13

NIS08-01

JIS11-08

ZAS09-11

ZAS09-19

KDS07-03

BOS09-02

ZAS09-18

YBS09-04

SOS09-02

KTS07-05

KNS07-05

JIS06-05

ZAS10-01

KNS09-35

KNS10-06

KNS07-23

2007.31

2009

2006.5

2008.59

2011.26

2007.23

2008.45

2008.19

2008.83

2010.04

2006.94

2006.67

2007.26

2006.51

2008.69

2008.68

2008.61

2008.93

2008.27

2008.4

2008.87

2006.05

2007.89

2009.38

2007.15

2006.64

2008.27

2006.4

2008.97

2008.68

2008.91

2006.08

2009.01

2006.32

2008.81

2008.9

2007.43

2007.73

2006.74

2007.2

2006.5

2011.36

2010.43

2006.44

2007.21

2010.65

2008.95

2007.95

2008.2

2008.3

2007.32

2010.68

2008.2

2008.52

2008.88

2008.6

2006.27

2008.44

2008.94

2006.26

2008.08

2010.99

2007.38

2006.05

2008.58

2008.07

2008.95

2008.05

2008.53

2007.09

2008.9

2010.36

2008.91

2008.02

2010.97

2011

2008.94

2006.05

2008.99

2011.18

2006.35

2008.94

2006.82

2008.88

2008.9

2006.88

2008.66

2010.12

2006.27

2006.41

2008.28

2006.51

2008.67

2008.91

2008.62

2006.39

2009

2009.26

2009.35

2010.72

2007.29

2008.74

2008.25

2009.99

2008.87

2007.99

2010.38

2011.07

2008.99

2007.01

2008.98

2006.18

2007.31

2009.96

2006.61

2007.42

2009.4

2010.86

2009.08

2009.08

2008.39

2008.92

2008.95

2007.1

2008.68

2007.73

2006.19

2009.39

2008.96

2009.02

2008.96

2007.63

2006.2

2010.63

2008.91

2007

2009.14

2011

2008.02

2008.66

2008.98

2008.43

2006.28

2008.92

2008.12

2007

2008.95

2009.01

2008.34

2007.12

2006.6

2008.71

2006.28

2009.03

2010.81

2006.27

2008.43

2006.53

2007.41

2007.77

2006.25

2005.99

2008.9

2006.04

2008.98

2006.69

2007.34

2010.26

2008.24

2010.25

2008.41

2008.71

2011.27

2008.99

2006.44

2006.96

2007.99

2006.77

2006.66

2008.48

2008.46

2009.87

2008.91

2006.99

2006.42

2007.01

2008.89

2006.26

2008.85

2010.3

2008.98

2006.64

2008.91

2008.5

2007.11

2008.32

2008.91

2008.6

2008.99

2008.01

2007.48

2008.96

2008.78

2009.19

2008.52

2006.42

2010.61

2006.49

2008.96

2009.16

2008.98

2008.58

2010.91

2008.45

2010.68

2007.68

2006.77

2007.34

2006.65

2009.71

2006.75

2009.14

2007.21

2007.37

2006.75

2008.41

2009.9

2006.51

2008.13

2006.57

2006.5

2008.93

2006.63

2010.98

2007.35

2008.92

2007.59

2010.49

2008.89

2007.28

2006.89

2008.47

2007.15

2007.33

2008.87

2008.04

2007.31

2008.01

2007.59

2006.28

2008.95

2008.65

2008.54

2006.36

2008.93

2006.32

2009.9

2008.34

2011.19

2006.23

2006.95

2008.91

2007.08

2008

2008.14

2008.3

2009.19

2008.93

2006.34

2006.42

2007.15

2009.72

2008.64

2007.75

2008.13

2008.72

2008.98

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2008.93

2008.94

2006.59

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2007.72

2008.95

2007.62

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2010.51

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2010.07

2006.57

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2008.69

2006.78

2009

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2007.05

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2008.96

2007.13

2006.63

2010.2

2008.96

2011.3

2008.74

2008.94

2008.18

2006.61

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2006.18

2008.95

2006.58

2008.22

2008.97

2006.3

2008.98

2010.48

2008.88

2008.92

2007.64

2006.83

2008.85

2008.93

2008.8

2008.83

2006.61

2006.59

2007.06

2007.28

2006.87

2008.41

2009.03

2006.25

2008.21

2008.11

2009.56

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2008.95

2009.01

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2009.55

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2011.02

2008.64

2008.53

2008.92

2007.27

2008.77

2007.56

2008.94

2007.04

2007.32

2011.59

2008.19

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2008.66

2008.36

2007.88

2008.5

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Legends to Supplemental Figures

FIG. S1. Maximum clade credibility (MCC) tree of cVDPV2 lineage group 2005-6, scaled from

the estimated date of the initiating tOPV dose (14 September 2005) to the last isolate (07 February

2008). The earliest 2005-6 isolate is underlined. MCC estimates of the dates of divergence of lineages

are given at nodes.

FIG. S2. MCC tree of cVDPV2 lineage group 2005-8, scaled from the estimated date of the

initiating tOPV dose (26 October 2005) to the last 2011 isolate (17 December 2011). The earliest 2005-

8 isolate is underlined. * VDPV2/WPV1 co-infections; ** VDPV2/WPV3 co-infections; ∆ isolates in

which the codon for VP1-Thr24 was deleted; c, isolate from a healthy contact of an AFP case. MCC

estimates of the dates of divergence of lineages are given at nodes.


initiating tOPV dose (03 December 2005) to the last isolate (05 March 2009). The earliest 2005-10

isolate is underlined. MCC estimates of the dates of divergence of lineages are given at nodes.


initiating tOPV dose (05 September 2007) to the last isolate (25 May 2010). The earliest 2007-4 isolate

is underlined. MCC estimates of the dates of divergence of lineages are given at nodes.

JVI02954-12 v2 Supplemental Material Tables S1-S8jvi.asm.org/content/suppl/2013/04/04/JVI.02954-12.DC...Supplemental Material 2 Table S1. VDPV2 isolates, Nigeria, 2005−2011 Emergence

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