An Atlas of Investigation and Management HELICOBACTER PYLORI CLINICAL PUBLISHING Motor area Limbic system Paraventricular nucleus Arcuate nucleus Antiorexiogenic neurones Orexiogenic neurones Brainstem Food Leptin Leptin/ Ghrelin CCK Insulin GLP Nutrients Gastrointestinal tract and pancreatobiliary system Liver Adipose tissue tamine glutamate α-ketoglutarate + GDH H. pylori GS NH 3 UREA Normal micelle structure of mucus layer DIGES ENZYM DIGES ENZYM H + H + U = urease GDH = glutamate dehydrogenase GS = glutamine synthet U NH 3 NH 3
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An Atlas of Investigation and Management
HELICOBACTER PYLORIThis comprehensive illustrated guide sets out the pathology, clinical presentation and options for treatment of Helicobacter pylori infection. Presented in a clinical context, instructive chapters cover key topics, including: genomics, metabolism, taxonomy, epidemiology and pathogenesis. There are also detailed sections on diagnosis and management of patients with gastric disease.
An important reference not only for clinicians but also microbiologists, it provides an up-to-date summary of our current knowledge of this organism and the many ways in which it impacts upon public health in all parts of the world.
Related titles:
Esophageal Diseases: an Atlas of Investigation and Management, MF VaeziISBN 978 1 904392 55 2
Inflammatory Bowel Disease: an Atlas of Investigation and Management, TR Orchard, RD Goldin, PP Tekkis, HRT WilliamsISBN 978 1 84692 013 4
Paediatric Gastroenterology: an Atlas of Investigation and Management, JM Moreno-Villares, I PolancoISBN 978 1 84692 009 7
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in any form or by any means, without the prior permission in writing of Clinical Publishing or Atlas Medical
Publishing Ltd
Although every effort has been made to ensure that all owners of copyright material have been acknowledged
in this publication, we would be glad to acknowledge in subsequent reprints or editions any omissions brought
to our attention
Clinical Publishing and Atlas Medical Publishing Ltd bear no responsibility for the persistence or accuracy of
URLs for external or third-party internet websites referred to in this publication, and does not guarantee that
any content on such websites is, or will remain, accurate or appropriate.
A catalogue record for this book is available from the British Library
ISBN-13 978 1 904392 89 7
ISBN e-book 978 1 84692 630 3
The publisher makes no representation, express or implied, that the dosages in this book are correct.
Readers must therefore always check the product information and clinical procedures with the most
up-to-date published product information and data sheets provided by the manufacturers and the
most recent codes of conduct and safety regulations. The authors and the publisher do not accept any
liability for any errors in the text or for the misuse or misapplication of material in this work
Project manager: Gavin Smith, GPS Publishing Solutions, Herts, UK
Typeset by Phoenix Photosetting, Chatham, Kent, UK
Printed and bound by Marston Book Services Ltd, Abingdon, Oxon, UK
AIM-Helicobacter_Pylori.indb 4 16/01/2012 10:15
Contents
Abbreviations vi
General note viii
1. Discovery, metabolism, genome and taxonomy 1
2. Epidemiology and colonization 23
3. Clinical features 37
4. Pathogenesis 63
5. Diagnosis 95
6. Management 113
7. Case studies 139
Index 143
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vi
Abbreviations
ABC ATP-binding cassette
ACh acetylcholine
ADH alcohol dehydrogenase
AG atrophic gastritis
Alp adherence-associated lipoprotein
AMP adenosine monophosphate
AP-PCR Arbitrarily primed PCR
AS aphthous stomatitis
ATP adenosine triphosphate
BabA2 Lewis blood group antigen-binding
protein
BHIA brain heart infusion agar
BLAST Basic Local Alignment Search Tool
BMI body mass index
bp base pairs
BRENDA bacteria restriction endonuclease
analysis
CAD coronary artery disease
CagA cytotoxin-associated gene A protein
cAMP cyclic-AMP
CARD caspase recruitment domains
CD Crohn’s disease
cDNA complementary DNA
Che chemotaxis protein
CLO Campylobacter-like organism
CM cytoplasmic membrane
CoA coenzyme A
COPD chronic obstructive pulmonary disease
COX cyclo-oxygenase
ECG electrocardiogram
EGF epidermal growth factor
EGFR EGF receptor
EHSG European Helicobacter Study Group
Erk extracellular signal regulated kinase
EYA egg yolk agar
FADH flavin adenine dinucleotide (reduced)
FD functional dyspepsia
Fec ferric citrate transporter
FlaA/-B flagellin protein subunit A or B
Flg flagellar basal body rod protein
Fli flagellar motor switch protein
Frp NAD(P)H-flavin oxidoreductase
GH growth hormone
GlcNAc N-acetyl glucosamine
GORD gastro-oesophageal reflux disease
GroEL a chaperonin
HLA human leukocyte antigen
HopZ Helicobacter outer membrane adhesin
protein
Hpa flagellar sheath adhesin
HSP heat shock protein
IBD inflammatory bowel disease
ICAM intracellular adhesion molecule
IceA restriction endonuclease (induced by
contact with epithelium)
Ig immunoglobulin
IL interleukin
iNOS inducible nitric oxide synthase
InvA invasion protein
ITP idiopathic thrombocytopenic purpura
ITT intention to treat
Le Lewis antigen
LPS lipopolysaccharide
MALDI-TOF matrix-assisted laser desorption/
ionization time-of-flight
MALT mucosal-associated lymphoid tissue
Mbp megabase pairs
MCA MacConkey agar
MCP macrophage chemoattractant protein
MLEE multilocus enzyme electrophoresis
MLST multilocus sequence typing
MLVA multiple loci VNTR analysis
Mot flagellar motor protein
MTM modified Thayer–Martin agar
MurNAc N-acetyl muramic acid
NAD nicotinamide adenine dinucleotide
NADH nicotinamide adenine dinucleotide
(reduced)
NADPH nicotinamide adenine dinucleotide
phosphate (reduced)
NFAT nuclear factor of activated T cell
NixA nickel-transport protein
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vii
NOD1/-2 nucleotide-binding o ligomerization
domain-containing protein 1 or -2
NSAID non-steroidal anti-infl ammatory drug
NSF N-ethylmaleimide-sensitive factor
OipA outer infl ammatory protein A
PAF platelet-activating factor
PAI pathogenicity island
PAMP pathogen associated molecular pattern
Pbp penicillin-binding protein
PCR polymerase chain reaction
PG peptidoglycan
PGE2 prostaglandin E
2
PLA phospholipase A
PPIs proton pump inhibitors
PSGN pepsinogen
PUD peptic ulcer disease
RecG ATP-dependent DNA helicase
RecN DNA repair protein
RFLP restriction fragment length
polymorphism
RT-PCR reverse transcription PCR
RUT rapid urease test
RuvABC Holliday junction resolvase
SabA sialic acid-binding adhesin protein
SCC squamous cell carcinoma
Sec preprotein translocase subunit
SHP-2 Src homology-2 domain
s sigma factor (RNA polymerase factor)
SNARE soluble NSF attachment protein
receptor
spp. species (note: sp. singular)
Src proto-oncogene tyrosine-protein kinase
Src
SST somatostatin
TNF tumour necrosis factor
TonB T-one (bacteriophage T1) ferric
hydroxamate transporter B
TSA trypticase soy agar
TTI ‘test and treat’ intervention
UKCRC UK Clinical Research Collaboration
Uvr excision endonuclease subunit
VCAM vascular cell adhesion molecule
VNTR variable-number tandem repeat
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viii
Acknowledgement
The authors are grateful to the contribution made to this book by Dr Carla Vindigni, Pathology Unit, Department of
Oncology, Policlinico Santa Maria alle Scotte, Siena, Italy
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1
Discovery
In 2005, Warren and Marshall were awarded the
Nobel Prize for Medicine and Physiology for a
discovery made by Warren over 25 years ago. Warren,
a histopathologist, noted an association between a
helical-shaped organism in the stomach of humans
and gastritis. Several investigators had seen similar
organisms over the preceding decades in a variety
of animals, including humans. However, they were
considered to be commensals by most who noticed them
and were therefore ignored. However, because of the
very close association between presence of the organism
and presence of inflammation in the stomach, Warren
thought there might be a causal relationship. Warren and
Marshall studied 100 patients and found the organism
to be present in every patient who had a duodenal
ulcer and suggested it might also be related to peptic
ulceration as well as gastritis. Warren and Marshall’s
perseverance paid off and, in 1984, they informed the
scientific community. Few people believed them: in
order to satisfy Koch’s Postulates, Marshall and, at a later
date, Morris self-administered a culture of the isolated
organism. They developed dyspeptic symptoms and on
endoscopy had gastritis. They successfully eradicated
the organism by taking bismuth and antibiotics. Slowly,
evidence accumulated from a number of sources as to
the causal relationship between Helicobacter pylori (as it
is now called) and serious gastroduodenal and possibly
extra-gastrointestinal disease.
Helicobacter pylori was initially called a Campylobacter-like organism (CLO), then for a short time Campylobacter pyloridis and Campylobacter pylori. A new genus,
Helicobacter, was proposed in 1989 (with Helicobacter pylori as the type species) based on a number of
differences between the newly isolated bacterium and
the genus Campylobacter (Table 1.1). Major differences
in the fatty acid profile also exist between Campylobacter and Helicobacter. The former is characterized by the
presence of 3-hydroxyltetradecanoic acid (14:0),
hexadecanoic acid (16:0), octadecanoic acid (18:1) and
C19 cyc (cyclopropane); the latter by tetradecanoic