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http://iphylo.blogspot.dk/2013/10/what-can-global-biodiversity.html
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GBIF ideas

May 10, 2015

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Technology

Roderic Page

Slides from an informal talk about possible topics for GBIF
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Page 1: GBIF ideas

http://iphylo.blogspot.dk/2013/10/what-can-global-biodiversity.html

Page 2: GBIF ideas

Coverage

Page 3: GBIF ideas
Page 4: GBIF ideas

BioStor

Page 5: GBIF ideas

Coverage

• How representative is data? How to show this?

• Adding other sources of data (e.g., literature)

• Adding data is cumbersome (can’t do it directly)

Page 6: GBIF ideas

Quality

Page 7: GBIF ideas
Page 8: GBIF ideas

Mormopterus petrophilus and Sauromys petrophilus

Page 9: GBIF ideas

Quality

• Errors and duplicates

• Need measure of reliability

• Ability to flag and fix (make editable)

• [need stable occurrence ids]

Page 10: GBIF ideas

Annotation/correction

Page 11: GBIF ideas
Page 12: GBIF ideas
Page 13: GBIF ideas
Page 14: GBIF ideas

Annotations

• Need stable occurrence ids

• Annotate, edit, fix data (github?)

• DOIs for data (and data versions)

• DOIs link to ORCID, automatic credit

Page 15: GBIF ideas

Names

Page 16: GBIF ideas
Page 17: GBIF ideas

LSIDsRDF

Triple storeOr Semantic Wiki

Page 18: GBIF ideas

Names

• Use nomenclators as source of names

• Checklists/classifications map nodes to names

• Create central list of names (triple store/wiki)

Page 19: GBIF ideas

New data

Page 20: GBIF ideas

Coverage

Page 21: GBIF ideas
Page 22: GBIF ideas

Coverage

Page 23: GBIF ideas

New data

• Treat GenBank as another DWCA source

• Phylogeny and phylogeography

• Visualising phylogenetic/genomic diversity