2016-12-14 Introduction to GBIF. GBIF seminar in Bergen.

PhotobyDagEndresen,March2016Introduc:ontoGlobalBiodiversity

Informa:onFacility(GBIF)

GBIFenablesfreeandopenaccesstobiodiversitydataonline.

Weareaninterna:onalgovernment-ini:atedand-fundedini:a:vefocusedonmakingbiodiversitydataavailabletoallandanyone,forscien:ficresearch,conserva:onandsustainabledevelopment.

Status9thDecember2016

GBIFprovidesaninfrastructuretodiscoverdata

globalregistry dataportal

thatisdependentonresolvableandstableiden<fiersforfullfunc<onality

Research institute

Biodiversity ConservationBiodiversity

AnalysisGBIF portal

Global information systems

Scientific Research

STANDARD MULTIPLE-PURPOSE DATA-SERVICES

Data integration & data interoperability

GEOBONBiodiversityobserva:onnetwork

INTERGOVERNMENTAL GROUP ON EARTH OBSERVATIONS

Asia (lack of data)

Africa (lack of data)

MAP OF NATIONAL PARTICIPANTS

Updated November 2016

parti

cipa

tion

Asia (lack of data)

Africa (lack of data)

DATA PUBLISHED THROUGH GBIF.ORG

www.gbif.org/analytics/global

data

ava

ilabi

lity

DATA PUBLISHED BY COUNTRY, YTD 2016 AS OF 31 OCT 2016

All others

NZAU

DK

ES

CO

NO

ZADE

NL

US

1 United States 14,258,959 2 Netherlands 12,707,525 3 Germany 11,636,441 4 South Africa 9,303,521 5 Norway 4,257,569 6 Colombia 3,725,644 7 Spain 3,161,768 8 Denmark 3,032,962 9 Australia 2,070,365

10 New Zealand 1,844,320

NOTE: Datasets are assigned to countries according to the location of the publishing institution, including aggregated datasets with contributors from many other countries

data

ava

ilabi

lity

TOTAL DATA PUBLISHED BY COUNTRY AS OF 31 OCT 2016

All others

BE

ES

ZA

GB

NL

DE

AU

FRSE

US

1 United States 269,908,182 2 Sweden 53,791,605 3 France 39,900,258 4 Australia 37,232,140 5 Germany 27,003,112 6 Netherlands 25,709,366 7 United Kingdom 22,986,875 8 Norway 22,534,127 9 South Africa 20,441,422

10 Spain 14,474,227

data

ava

ilabi

lity

DATA DOWNLOAD REQUESTS BY COUNTRY, YTD 2016 AS OF 31 OCT 2016

All others

IT

CN

IN

ZA

GBCO

ES

BR

MX

US

1 United States 12,305 2 Mexico 11,982 3 Brazil 6,769 4 Spain 4,511 5 Colombia 4,470 6 United Kingdom 4,257 7 South Africa 2,938 8 India 2,902 9 China 2,724

10 Italy 2,007

Users of occurrence data in Norway generally use Artskart.

data

acc

ess

and

use

2016

2015

2014

2013

2012

2011

2010

2009

2008

0 125 250 375 500

416

52

89

148

169

229

249

350

407

347

Peer-reviewed publications using GBIF-mediated data 2016 projection

�1

DAT

A A

CC

ESS

AN

D U

SE

Peer-reviewed publications using GBIF-mediated data

PEER-REVIEWED USES, BY COUNTRY AND REGION, 2016 AS OF 31 OCT 2016

Oceania

North America

Latin AmericaEurope

Asia

Africa

�1

Year-to-date 2016

1 United States 126

2 Brazil 45

3 United Kingdom 42

4 Germany 40

5 Australia 39

6 China 37

7 Mexico 33

8 France 32

9 Spain 21

10 Canada 20

October 2016 1 United States 15 2 Brazil 8 3 Mexico 6 3 United Kingdom 6 5 Australia 4 6 Denmark 3 6 Germany 3 6 Netherlands 3

data

acc

ess

and

use

2016

Norwayyear-to-date2016,19publica<ons

RESEARCH EXAMPLES NORWAY YTD 2016

Araújo R, Assis J, Aguillar R, Airoldi L, Bárbara I, Bartsch I, Bekkby T et al. (2016) Status, trends and drivers of kelp forests in Europe: an expert assessment. Biodiversity and Conservation 25(7) 1319-1348. DOI:10.1007/s10531-016-1141-7.

Gjershaug JO, Frode Ødegaard F, Staverløkk A & Olsen KM (2016) Records of bilateral gynandromorphism in three species of ants (Hymenoptera, Formicidae) in Norway. Norwegian Journal of Entomology 63(1): 65-70.

Phillips J, Asdal Å, Brehm JM, Rasmussen M, Maxted N (2016) In situ and ex situ diversity analysis of priority crop wild relatives in Norway. Diversity and distributions 22(11): 1112-1126. DOI: 10.1111/ddi.12470

Özkan Ş, Andrea Vitali, Nicola Lacetera, Barbara Amon, André Bannink, Dave J. Bartley, et al. (2016) Challenges and priorities for modelling livestock health and pathogens in the context of climate change. Environmental Research 151: 130-144. DOI: 10.1016/j.envres.2016.07.033

Bjerke JW, Bokhorst S, Callaghan TV, Phoenix GK (2016) Persistent reduction of segment growth and photosynthesis in a widespread and important sub-Arctic moss species after cessation of three years of experimental winter warming. Functional Ecology. DOI: 10.1111/1365-2435.12703

Wauchope HS, Shaw JD, Varpe Ø, Lappo EG, Boertmann D, & Lanctot RB (2016) Rapid climate-driven loss of breeding habitat for Arctic migratory birds. Global Change Biology. DOI: 10.1111/gcb.13404

Norway year-to-date, 19 publications https://www.mendeley.com/groups/1068301/gbif-public-library/papers/added/0/tag/Norway/

data

acc

ess

and

use

2016 SCIENCE REVIEW

Just published! Annual publication summarizes more than 100 peer-reviewed articles that rely on GBIF-mediated data. Accompanying Sourcebook includes more than 400 citations. Download: §  gbif.org/science-review §  gbif.org/science-review-sourcebook-2016

http://www.gbif.org/science-review

dat

a ac

cess

and

use

LATEST NEWS

First BID grants provide nearly €1 million in funding to 23 African projects ¤  EU-funded programme grantees

represent 34 organizations from 20 African countries (Read more)

¤  Open call for Caribbean and the Pacific (read more)

¤  Read more about BID

http://www.gbif.org/newsroom/summary Photos: (left) One Tree Plain, CC BY-NC-SA 2015 Geoff Livingston, (centre) Peacock pansy (Junonia almana), Ho Chi Minh, Vietnam.

CC BY-SA 2015 Pavel Kirillov via iNaturalist. (right) Photo courtesy of Nestor Engone Obiang.

com

mun

icatio

ns

BIFA grants to benefit 14 Asian countries Four project share €106,000 in funding to enhance data publishing capacity of current and future network members. Read more

Belgium, Taiwan and Norway nodes provided BIFA funded mentoring for the AESEAN heritage parks in July 2017. Read more (at gbif.no)

Appeal for help after damage Gabon's national herbarium

Post-election riots in September spared collections, but caused major damage to the BID grantee’s headquarters in Libreville, Gabon.

Read English or French

LATEST NEWS

Four network projects awarded 2016 capacity enhancement support grants (mentoring) ¤  A total of €23,300 in funding will

support the work of GBIF nodes and partners in five countries (Colombia, France, Guinea, Portugal, Spain).

¤  Read more

http://www.gbif.org/newsroom/summary Photos:. (center) courtesy of GBIF Portugal.

(right) Red-crested pochards (Netta rufina) off the eastern shore of Obersee, Switzerland, photo by roby 2016 CC BY-NC via iNaturalist.

com

mun

icatio

ns

Four countries become the GBIF network’s newest national members ¤  Switzerland (voting) ¤  Ecuador (associate) ¤  Niger (associate) ¤  Nigeria (associate)

New Darwin Core templates released Pre-configured Excel templates simplify data formatting, preparation and publication. –  metadata template –  checklist template –  occurrence template –  sampling event template Read more Template tool from GBIF.no

LATEST NEWS

http://www.gbif.org/newsroom/summary Photos: (far right) © 2016 Williams Fagner.

com

mun

icatio

ns

Data licensing milestone

All species occurrence datasets on GBIF.org now carry standardized Creative Commons licenses.

CC0 57 % CC-BY 4.0 31 % CC-BY-NC 4.0 13 %

Read initial announcement and update

2016 Ebbe Nielsen Challenge winner

Alejandro Ruete (Argentina, postdoc at SLU, Sweden) seeks to calculate ‘Where and when is there enough data?’

Read more

2016 Young Researchers Awards

Meet the winners!

–  Mexican PhD student Juan M. Escamilla Mólgora

–  Brazilian Master’s student Bruno Umbelino

Publish data

PUBLISH DATA IN GBIF da

ta p

ublis

hing

Step 1: data holding research institutes seek endorsement as an approved data publisher.

Step 2: datasets are identified and converted to standard Darwin Core format.

Step 3: datasets can be published directly from the data node and/or with the assistance from a national (or thematic) GBIF node.

Some (citizen science) data platforms publish in GBIF.

8datasets424655occurrencerecords

AlldatasetsinGBIFareassignedadatasetDOI

Discover and download data

GBIF DATA PORTAL

SPECIES SEARCH

Loginisrequiredtodownloaddata

Yourpreviousdatadownloadsarelistedfromtheuserprofile

(...)

AlldownloadsareassignedaDOIforcita:on

(...)

Services to enable data analysis

GBIF DATA PORTAL API An interface to access data published through the GBIF network using web services.

ROPENSCI : RGBIF library(rgbif) key <- name_backbone(name='Hepatica nobilis', kingdom=‘Plantae')$speciesKey sp <- occ_search(taxonKey=key, return='data', hasCoordinate=TRUE, limit=1000) gbifmap(sp)

GBIF Norway

GBIFportal:

22,9millionoccurrenceswithloca:onsinNorway.Publishedfrom31countriesworldwide.

Updated9thDecember2016

Finland

Norway Sweden

Iceland

Nov2016 Datasets Occurrences

Denmark 68+1 11919745Finland 54 3164965Iceland 4 458705Norway 117+2+5 22558484Sweden 42 53818302

h\p://www.gbif.o

rg/cou

ntry/N

O

STATUS FOR NORDIC GBIF NODES (DATA HOSTED BY…)

Danmark

NodeteamatNHM,UniversityofOsloDagEndresen,NodemanagerChris:anSvindseth,Databasemanager

FridtjofMehlum,ResearchdirectorEinarTimdal,AssociateprofessorGeirSøli,AssociateprofessorVidarBakken,Consultant

Artsdatabanken,Trondheim

WouterKochNilsValland

NTNUUniversityMuseumAndersFinstad,GBIFSciencecommiLee

ResearchCouncilofNorway

PerBacke-Hansen,Headofdelega<on

Contactusat:[email protected]