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Factor analysisFrom Wikipedia, the free encyclopedia
Factor analysis is astatisticalmethod used to describevariabilityamong observed, correlatedvariablesin
terms of a potentially lower number of unobserved variables called factors. In other words, it is possible, for
example, that variations in three or four observed variables mainly reflect the variations in fewer unobserved
variables. Factor analysis searches for such joint variations in response to unobservedlatent variables. The
observed variables are modeled aslinear combinationsof the potential factors, plus "error" terms. The
information gained about the interdependencies between observed variables can be used later to reduce the
set of variables in a dataset. Computationally this technique is equivalent tolow rank approximationof the
matrix of observed variables. Factor analysis originated inpsychometrics, and is used in behavioral
sciences,social sciences,marketing,product management,operations research, and other applied sciences
that deal with large quantities ofdata.
Factor analysis is related toprincipal component analysis(PCA), but the two are not identical.Latent variable
models, including factor analysis, use regression modelling techniques to test hypotheses producing error
terms, while PCA is a descriptive statistical technique.[1]
There has been significant controversy in the field over
the equivalence or otherwise of the two techniques (seeexploratory factor analysis versus principal
components analysis).[citation needed]
Contents
[hide]
1 Statistical model
o 1.1 Definition
o 1.2 Example
o 1.3 Mathematical model of the same example
2 Practical implementation
o 2.1 Type of factor analysis
o 2.2 Types of factoring
o 2.3 Terminology
o 2.4 Criteria for determining the number of factors
o 2.5 Rotation methods
3 Factor analysis in psychometrics
o 3.1 History
o 3.2 Applications in psychology
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tor_analysis#Historyhttp://en.wikipedia.org/wiki/Factor_analysis#Factor_analysis_in_psychometricshttp://en.wikipedia.org/wiki/Factor_analysis#Rotation_methodshttp://en.wikipedia.org/wiki/Factor_analysis#Criteria_for_determining_the_number_of_factorshttp://en.wikipedia.org/wiki/Factor_analysis#Terminologyhttp://en.wikipedia.org/wiki/Factor_analysis#Types_of_factoringhttp://en.wikipedia.org/wiki/Factor_analysis#Type_of_factor_analysishttp://en.wikipedia.org/wiki/Factor_analysis#Practical_implementationhttp://en.wikipedia.org/wiki/Factor_analysis#Mathematical_model_of_the_same_examplehttp://en.wikipedia.org/wiki/Factor_analysis#Examplehttp://en.wikipedia.org/wiki/Factor_analysis#Definitionhttp://en.wikipedia.org/wiki/Factor_analysis#Statistical_modelhttp://en.wikipedia.org/wiki/Factor_analysishttp://en.wikipedia.org/wiki/Wikipedia:Citation_neededhttp://en.wikipedia.org/wiki/Factor_analysis#Exploratory_factor_analysis_versus_principal_components_analysishttp://en.wikipedia.org/wiki/Factor_analysis#Exploratory_factor_analysis_versus_principal_components_analysishttp://en.wikipedia.org/wiki/Factor_analysis#cite_note-Bartholomew2008-1http://en.wikipedia.org/wiki/Latent_variable_modelhttp://en.wikipedia.org/wiki/Latent_variable_modelhttp://en.wikipedia.org/wiki/Principal_component_analysishttp://en.wikipedia.org/wiki/Datahttp://en.wikipedia.org/wiki/Operations_researchhttp://en.wikipedia.org/wiki/Product_managementhttp://en.wikipedia.org/wiki/Marketinghttp://en.wikipedia.org/wiki/Social_scienceshttp://en.wikipedia.org/wiki/Psychometricshttp://en.wikipedia.org/wiki/Low_rank_approximationhttp://en.wikipedia.org/wiki/Errors_and_residuals_in_statisticshttp://en.wikipedia.org/wiki/Linear_combinationhttp://en.wikipedia.org/wiki/Latent_variablehttp://en.wikipedia.org/wiki/Variable_(mathematics)http://en.wikipedia.org/wiki/Variancehttp://en.wikipedia.org/wiki/Statistics7/28/2019 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o 3.3 Advantages
o 3.4 Disadvantages
4 Exploratory factor analysis versus principal components analysis
o
4.1 Arguments contrasting PCA and EFA
o 4.2 Variance versus covariance
o 4.3 Differences in procedure and results
5 Factor analysis in marketing
o 5.1 Information collection
o 5.2 Analysis
o 5.3 Advantages
o 5.4 Disadvantages
6 Factor analysis in physical sciences
7 Factor analysis in microarray analysis
8 Implementation
9 See also
10 References
11 Further reading
12 External links
[edit]Statistical model
[edit]Definition
Suppose we have a set of observable random variables, with means .
Suppose for some unknown constants and unobserved random variables , where
and , where , we have
Here, the are independently distributed error terms with zero mean and
finite variance, which may not be the same for all . Let
, so that we have
In matrix terms, we have
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If we have observations, then we will have the
dimensions , , and . Each column of
and denote values for one particular observation, and
matrix does not vary across observations.
Also we will impose the following assumptions on .
1. and are independent.
2.
3. (to make sure that the factors are
uncorrelated)
Any solution of the above set of equations following the
constraints for is defined as the factors, and as the loading
matrix.
Suppose . Then note that from the
conditions just imposed on , we have
or
or
Note that for anyorthogonal matrix if we
set and , the criteria for
being factors and factor loadings still hold. Hence a
set of factors and factor loadings is identical only up
to orthogonal transformation.
[edit]Example
The following example is for expository purposes,
and should not be taken as being realistic. Suppose
a psychologist proposes a theory that there are two
kinds ofintelligence, "verbal intelligence" and
"mathematical intelligence", neither of which is
directly observed.Evidencefor the theory is sought
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in the examination scores from each of 10 different
academic fields of 1000 students. If each student is
chosen randomly from a largepopulation, then each
student's 10 scores are random variables. The
psychologist's theory may say that for each of the
10 academic fields, the score averaged over the
group of all students who share some common pair
of values for verbal and mathematical "intelligences"
is someconstanttimes their level of verbal
intelligence plus another constant times their level of
mathematical intelligence, i.e., it is a combination of
those two "factors". The numbers for a particular
subject, by which the two kinds of intelligence aremultiplied to obtain the expected score, are posited
by the theory to be the same for all intelligence level
pairs, and are called "factor loadings" for this
subject. For example, the theory may hold that the
average student's aptitude in the field
oftaxonomyis
{10 the student's verbal intelligence} + {6 the student's
mathematical intelligence}.
The numbers 10 and 6 are the factor loadings
associated with taxonomy. Other academic
subjects may have different factor loadings.
Two students having identical degrees of verbal
intelligence and identical degrees of
mathematical intelligence may have different
aptitudes in taxonomy because individual
aptitudes differ from average aptitudes. That
difference is called the "error" a statistical
term that means the amount by which an
individual differs from what is average for his or
her levels of intelligence (seeerrors and
residuals in statistics).
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The observable data that go into factor analysis
would be 10 scores of each of the 1000
students, a total of 10,000 numbers. The factor
loadings and levels of the two kinds of
intelligence of each student must be inferred
from the data.
[edit]Mathematical model of the
same example
In the example above, fori= 1, ..., 1,000 the ith
student's scores are
where
xk,i is the ith student's score for the kth
subject
is the mean of the students'
scores for the kth subject (assumed to
be zero, for simplicity, in the example
as described above, which would
amount to a simple shift of the scale
used)
vi is the ith student's "verbal
intelligence",
mi is the ith student's "mathematical
intelligence",
are the factor loadings for the kth
subject, forj= 1, 2.
k,i is the difference between the ith
student's score in the kth subject and
the average score in the kth subject of
all students whose levels of verbal and
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mathematical intelligence are the
same as those of the ith student,
Inmatrixnotation, we have
Nis 1000 students
Xis a 10 1,000 matrix
ofobservable random variables,
is a 10 1 column vector
ofunobservable constants (in this
case "constants" are quantities
not differing from one individual
student to the next; and "random
variables" are those assigned to
individual students; the
randomness arises from the
random way in which the students
are chosen). Note
that, is anouter
productof with a 11000 row
vector of ones, yielding a 10 1000 matrix of the elements of ,
L is a 10 2 matrix of factor
loadings
(unobservable constants, ten
academic topics, each with two
intelligence parameters that
determine success in that topic),
Fis a 2 1,000 matrix
ofunobservable random variables
(two intelligence parameters for
each of 1000 students),
is a 10 1,000 matrix
ofunobservable random
variables.
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Observe that by doubling the scale on
which "verbal intelligence"the first
component in each column ofFis
measured, and simultaneously halving
the factor loadings for verbal
intelligence makes no difference to the
model. Thus, no generality is lost by
assuming that the standard deviation
of verbal intelligence is 1. Likewise for
mathematical intelligence. Moreover,
for similar reasons, no generality is
lost by assuming the two factors
areuncorrelatedwith each other. The"errors" are taken to be independent
of each other. The variances of the
"errors" associated with the 10
different subjects are not assumed to
be equal.
Note that, since any rotation of a
solution is also a solution, this makes
interpreting the factors difficult. See
disadvantages below. In this particular
example, if we do not know
beforehand that the two types of
intelligence are uncorrelated, then we
cannot interpret the two factors as the
two different types of intelligence.
Even if they are uncorrelated, we
cannot tell which factor corresponds to
verbal intelligence and which
corresponds to mathematical
intelligence without an outside
argument.
The values of the loadings L, the
averages , and thevariancesof the
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"errors" must be estimated given the
observed dataXand F(the
assumption about the levels of the
factors is fixed for a given F).
[edit]Practical
implementation
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for verification. Please helpimprove
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bechallengedandremoved.(April 2012)
[edit]Type of factor analysis
Exploratory factor analysis(EFA) is
used to identify complex
interrelationships among items and
group items that are part of unified
concepts.[2]
The researcher makes no
"a priori" assumptions about
relationships among factors.[2]
Confirmatory factor
analysis(CFA) is a more complex
approach that tests the hypothesis that
the items are associated with specific
factors.[2]
CFA usesstructural equation
modelingto test a measurement
model whereby loading on the factors
allows for evaluation of relationships
between observed variables and
unobserved variables.[2]
Structural
equation modeling approaches can
accommodate measurement error,
and are less restrictive thanleast-
squares estimation.[2]
Hypothesized
models are tested against actual data,
and the analysis would demonstrate
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loadings of observed variables on the
latent variables (factors), as well as
the correlation between the latent
variables.[2]
[edit]Types of factoring
Principal component
analysis(PCA): PCA is a widely used
method for factor extraction, which is
the first phase of EFA.[2]
Factor
weights are computed in order to
extract the maximum possible
variance, with successive factoring
continuing until there is no further
meaningful variance left.[2]
The factor
model must then be rotated for
analysis.[2]
Canonical factor analysis, also
called Rao's canonical factoring, is a
different method of computing the
same model as PCA, which uses the
principal axis method. Canonical factor
analysis seeks factors which have the
highest canonical correlation with the
observed variables. Canonical factor
analysis is unaffected by arbitrary
rescaling of the data.
Common factor analysis, also called
principal factor analysis (PFA) or
principal axis factoring (PAF), seeks
the least number of factors which can
account for the common variance
(correlation) of a set of variables.
Image factoring: based on
thecorrelation matrixof predicted
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variables rather than actual variables,
where each variable is predicted from
the others usingmultiple regression.
Alpha factoring: based on
maximizing the reliability of factors,
assuming variables are randomly
sampled from a universe of variables.
All other methods assume cases to be
sampled and variables fixed.
Factor regression model: a
combinatorial model of factor model
and regression model; or alternatively,
it can be viewed as the hybrid factor
model,[3]
whose factors are partially
known.
[edit]Terminology
Factor loadings: The factor loadings,
also called component loadings in
PCA, are thecorrelation
coefficientsbetween the variables
(rows) and factors (columns).
Analogous toPearson's r, the squared
factor loading is the percent of
variance in that indicator variable
explained by the factor. To get the
percent of variance in all the variables
accounted for by each factor, add the
sum of the squared factor loadings for
that factor (column) and divide by the
number of variables. (Note the number
of variables equals the sum of their
variances as the variance of a
standardized variable is 1.) This is the
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same as dividing the factor's
eigenvalue by the number of variables.
Interpreting factor loadings: By one
rule of thumb in confirmatory factor
analysis, loadings should be .7 or
higher to confirm that independent
variables identified a priori are
represented by a particular factor, on
the rationale that the .7 level
corresponds to about half of the
variance in the indicator being
explained by the factor. However, the
.7 standard is a high one and real-life
data may well not meet this criterion,
which is why some researchers,
particularly for exploratory purposes,
will use a lower level such as .4 for the
central factor and .25 for other factors
call loadings above .6 "high" and those
below .4 "low". In any event, factor
loadings must be interpreted in the
light of theory, not by arbitrary cutoff
levels.
Inobliquerotation, one gets both a
pattern matrix and a structure matrix.
The structure matrix is simply the
factor loading matrix as in orthogonal
rotation, representing the variance in a
measured variable explained by a
factor on both a unique and common
contributions basis. The pattern
matrix, in contrast,
containscoefficientswhich just
represent unique contributions. The
more factors, the lower the pattern
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coefficients as a rule since there will
be more common contributions to
variance explained. For oblique
rotation, the researcher looks at both
the structure and pattern coefficients
when attributing a label to a factor.
Communality: The sum of the
squared factor loadings for all factors
for a given variable (row) is the
variance in that variable accounted for
by all the factors, and this is called the
communality. The communality
measures the percent of variance in a
given variable explained by all the
factors jointly and may be interpreted
as the reliability of the indicator.
Spurious solutions: If the
communality exceeds 1.0, there is a
spurious solution, which may reflect
too small a sample or the researcher
has too many or too few factors.
Uniqueness of a variable: That is,
uniqueness is the variability of a
variable minus its communality.
Eigenvalues:/Characteristic
roots: The eigenvalue for a given
factor measures the variance in all the
variables which is accounted for by
that factor. The ratio of eigenvalues is
the ratio of explanatory importance of
the factors with respect to the
variables. If a factor has a low
eigenvalue, then it is contributing little
to the explanation of variances in the
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variables and may be ignored as
redundant with more important factors.
Eigenvalues measure the amount of
variation in the total sample accounted
for by each factor.
Extraction sums of squared
loadings: Initial eigenvalues and
eigenvalues after extraction (listed by
SPSS as "Extraction Sums of Squared
Loadings") are the same for PCA
extraction, but for other extraction
methods, eigenvalues after extraction
will be lower than their initial
counterparts. SPSS also prints
"Rotation Sums of Squared Loadings"
and even for PCA, these eigenvalues
will differ from initial and extraction
eigenvalues, though their total will be
the same.
Factor scores (also called component
scores in PCA): are the scores of each
case (row) on each factor (column). To
compute the factor score for a given
case for a given factor, one takes the
case's standardized score on each
variable, multiplies by the
corresponding factor loading of the
variable for the given factor, and sums
these products. Computing factor
scores allows one to look for factor
outliers. Also, factor scores may be
used as variables in subsequent
modeling.
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[edit]Criteria for
determining the number
of factors
Using one or more of the methods
below, the researcher determines an
appropriate range of solutions to
investigate. Methods may not agree.
For instance, the Kaiser criterion may
suggest five factors and the scree test
may suggest two, so the researcher
may request 3-, 4-, and 5-factor
solutions discuss each in terms of their
relation to external data and theory.
Comprehensibility: A purely
subjective criterion would be to retain
those factors whose meaning is
comprehensible to the researcher.
This is not recommended[citation needed]
.
Kaiser criterion: The Kaiser rule is to
drop all components with eigenvalues
under 1.0 this being the eigenvalue
equal to the information accounted for
by an average single item. The Kaiser
criterion is the default inSPSSand
moststatistical softwarebut is not
recommended when used as the sole
cut-off criterion for estimating the
number of factors as it tends to
overextract factors.[4]
Variance explained criteria: Some
researchers simply use the rule of
keeping enough factors to account for
90% (sometimes 80%) of the variation.
Where the researcher's goal
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emphasizesparsimony(explaining
variance with as few factors as
possible), the criterion could be as low
as 50%
Scree plot: The Cattell scree test
plots the components as the X axis
and the correspondingeigenvaluesas
theY-axis. As one moves to the right,
toward later components, the
eigenvalues drop. When the drop
ceases and the curve makes an elbow
toward less steep decline, Cattell's
scree test says to drop all further
components after the one starting the
elbow. This rule is sometimes
criticised for being amenable to
researcher-controlled "fudging". That
is, as picking the "elbow" can be
subjective because the curve has
multiple elbows or is a smooth curve,
the researcher may be tempted to set
the cut-off at the number of factors
desired by his or her research agenda.
Horn's Parallel Analysis (PA): A
Monte-Carlo based simulation method
that compares the observed
eigenvalues with those obtained from
uncorrelated normal variables. A factor
or component is retained if the
associated eigenvalue is bigger than
the 95th of the distribution of
eigenvalues derived from the random
data. PA is one of the most
recommendable rules for determining
the number of components to
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retain,[citation needed]
but only few
programs include this option.[5]
Before dropping a factor below one's
cut-off, however, the researcher
should check its correlation with the
dependent variable. A very small
factor can have a large correlation with
thedependent variable, in which case
it should not be dropped.
[edit]Rotation methods
The unrotated output maximises the
variance accounted for by the first and
subsequent factors, and forcing the
factors to beorthogonal. This data-
compression comes at the cost of
having most items load on the early
factors, and usually, of having many
items load substantially on more than
one factor. Rotation serves to make
the output more understandable, by
seeking so-called "Simple Structure":
A pattern of loadings where items load
most strongly on one factor, and much
more weakly on the other factors.
Rotations can be orthogonal or oblique
(allowing the factors to correlate).
Varimax rotationis an orthogonal
rotation of the factor axes to maximize
the variance of the squared loadings
of a factor (column) on all the
variables (rows) in a factor matrix,
which has the effect of differentiating
the original variables by extracted
factor. Each factor will tend to have
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either large or small loadings of any
particular variable. A varimax solution
yields results which make it as easy as
possible to identify each variable with
a single factor. This is the most
common rotation option. However, the
orthogonality (i.e., independence) of
factors is often an unrealistic
assumption. Oblique rotations are
inclusive of orthogonal rotation, and
for that reason, oblique rotations are a
preferred method.[6]
Quartimax rotation is an orthogonal
alternative which minimizes the
number of factors needed to explain
each variable. This type of rotation
often generates a general factor on
which most variables are loaded to a
high or medium degree. Such a factor
structure is usually not helpful to the
research purpose.
Equimax rotation is a compromise
between Varimax and Quartimax
criteria.
Direct oblimin rotation is the
standard method when one wishes a
non-orthogonal (oblique) solution
that is, one in which the factors are
allowed to be correlated. This willresult in higher eigenvalues but
diminishedinterpretabilityof the
factors. See below.[clarification needed]
Promax rotation is an alternative
non-orthogonal (oblique) rotation
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method which is computationally faster
than the direct oblimin method and
therefore is sometimes used for very
largedatasets.
[edit]Factor analysis in
psychometrics
See also:g factor
[edit]History
Charles Spearmanpioneered the use
of factor analysis in the field of
psychology and is sometimes credited
with the invention of factor analysis.
He discovered that school children's
scores on a wide variety of seemingly
unrelated subjects were positively
correlated, which led him to postulate
that a general mental ability, org,
underlies and shapes human cognitive
performance. His postulate now
enjoys broad support in the fieldofintelligence research, where it is
known as thegtheory.
Raymond Cattellexpanded on
Spearman's idea of a two-factor theory
of intelligence after performing his own
tests and factor analysis. He used a
multi-factor theory to explain
intelligence. Cattell's theory addressed
alternate factors in intellectual
development, including motivation and
psychology. Cattell also developed
several mathematical methods for
adjusting psychometric graphs, such
as his "scree" test and similarity
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coefficients. His research led to the
development of his theory offluid and
crystallized intelligence, as well as
his16 Personality Factorstheory of
personality. Cattell was a strong
advocate of factor analysis
andpsychometrics. He believed that
all theory should be derived from
research, which supports the
continued use of empirical observation
and objective testing to study human
intelligence.
[edit]Applications inpsychology
Factor analysis is used to identify
"factors" that explain a variety of
results on different tests. For example,
intelligence research found that people
who get a high score on a test of
verbal ability are also good on other
tests that require verbal abilities.
Researchers explained this by using
factor analysis to isolate one factor,
often calledcrystallized intelligenceor
verbal intelligence, which represents
the degree to which someone is able
to solve problems involving verbal
skills.
Factor analysis in psychology is most
often associated with intelligence
research. However, it also has been
used to find factors in a broad range of
domains such as personality,
attitudes, beliefs, etc. It is linked
topsychometrics, as it can assess the
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validity of an instrument by finding if
the instrument indeed measures the
postulated factors.
[edit]Advantages
Reduction of number of variables,
by combining two or more
variables into a single factor. For
example, performance at running,
ball throwing, batting, jumping
and weight lifting could be
combined into a single factor such
as general athletic ability. Usually,
in an item by people matrix,
factors are selected by grouping
related items. In the Q factor
analysis technique, the matrix is
transposed and factors are
created by grouping related
people: For example,
liberals,libertarians,
conservatives and socialists,
could form separate groups.
Identification of groups of inter-
related variables, to see how they
are related to each other. For
example, Carroll used factor
analysis to build hisThree
Stratum Theory. He found that a
factor called "broad visual
perception" relates to how good
an individual is at visual tasks. He
also found a "broad auditory
perception" factor, relating to
auditory task capability.
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Furthermore, he found a global
factor, called "g" or general
intelligence, that relates to both
"broad visual perception" and
"broad auditory perception". This
means someone with a high "g" is
likely to have both a high "visual
perception" capability and a high
"auditory perception" capability,
and that "g" therefore explains a
good part of why someone is
good or bad in both of those
domains.[edit]Disadvantages
"...each orientation is equally
acceptable mathematically. But
different factorial theories proved
to differ as much in terms of the
orientations of factorial axes for a
given solution as in terms of
anything else, so that model fitting
did not prove to be useful in
distinguishing among theories."
(Sternberg, 1977[7]
). This means
all rotations represent different
underlying processes, but all
rotations are equally valid
outcomes of standard factor
analysis optimization. Therefore,
it is impossible to pick the proper
rotation using factor analysis
alone.
Factor analysis can be only as
good as the data allows. In
psychology, where researchers
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often have to rely on less valid
and reliable measures such as
self-reports, this can be
problematic.
Interpreting factor analysis is
based on using a "heuristic",
which is a solution that is
"convenient even if not absolutely
true".[8]
More than one
interpretation can be made of the
same data factored the same
way, and factor analysis cannot
identify causality.[edit]Exploratory factor
analysis versus principal
components analysis
See also:Principal component
analysisandExploratory factor
analysis
Whileexploratory factor
analysisandprincipal component
analysisare treated as synonymous
techniques in some fields of statistics,
this has been criticised (e.g. Fabrigar
et al., 1999;[9]
Suhr, 2009[10]
). In factor
analysis, the researcher makes the
assumption that an underlying causal
model exists, whereas PCA is simply a
variable reductiontechnique.
[11]Researchers have
argued that the distinctions between
the two techniques may mean that
there are objective benefits for
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preferring one over the other based on
the analytic goal.
[edit]Arguments
contrasting PCA and EFA
Fabrigar et al. (1999)[9]
address a
number of reasons used to suggest
that principal components analysis is
equivalent to factor analysis:
1. It is sometimes suggested
that principal components
analysis is computationally
quicker and requires fewer
resources than factor
analysis. Fabrigar et al.
suggest that the ready
availability of computer
resources have rendered this
practical concern irrelevant.[9]
2. PCA and factor analysis can
produce similar results. This
point is also addressed by
Fabrigar et al.; in certain
cases, whereby the
communalities are low (e.g.,
.40), the two techniques
produce divergent results. In
fact, Fabrigar et al. argue that
in cases where the data
correspond to assumptions of
the common factor model,
the results of PCA are
inaccurate results.[9]
3. There are certain cases
where factor analysis leads
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to 'Heywood cases'. These
encompass situations
whereby 100% or more of
thevariancein a measured
variable is estimated to be
accounted for by the model.
Fabrigar et al. suggest that
these cases are actually
informative to the researcher,
indicating a misspecified
model or a violation of the
common factor model. The
lack of Heywood cases in thePCA approach may mean
that such issues pass
unnoticed.[9]
4. Researchers gain extra
information from a PCA
approach, such as an
individuals score on a certain
component such
information is not yielded
from factor analysis.
However, as Fabrigar et al.
contend, the typical aim of
factor analysis i.e. to
determine the factors
accounting for the structure
of thecorrelationsbetween
measured variables doesnot require knowledge of
factor scores and thus this
advantage is negated.[9]
It is
also possible to compute
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factor scores from a factor
analysis.
[edit]Variance versus
covariance
Factor analysis takes into account
therandom errorthat is inherent in
measurement, whereas PCA fails to
do so. This point is exemplified by
Brown (2009),[12]
who indicated that, in
respect to the correlation matrices
involved in the calculations:
"In PCA, 1.00s are put in the
diagonal meaning that all of the
variance in the matrix is to be
accounted for (including
variance unique to each
variable, variance common
among variables, and error
variance). That would,
therefore, by definition, include
all of the variance in the
variables. In contrast, in EFA,
the communalities are put in
the diagonal meaning that only
the variance shared with other
variables is to be accounted for
(excluding variance unique to
each variable and error
variance). That would,
therefore, by definition, include
only variance that is common
among the variables."
Brown (2009), Principal
components analysis and
exploratory factor analysis
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Definitions, differences and
choices
For this reason, Brown (2009)
recommends using factor analysis
when theoretical ideas about
relationships between variables exist,
whereas PCA should be used if the
goal of the researcher is to explore
patterns in their data.
[edit]Differences in
procedure and results
The differences between principal
components analysis and factor
analysis are further illustrated by Suhr
(2009):
PCA results in principal
components that account for a
maximal amount of variance for
observed variables; FA account
for common variance in the
data.[10]
PCA inserts ones on the
diagonals of the correlation
matrix; FA adjusts the diagonals
of the correlation matrix with the
unique factors.[10]
PCA minimizes the sum of
squared perpendicular distance to
the component axis; FA estimates
factors which influence responses
on observed variables.[10]
The component scores in PCA
represent a linear combination of
the observed variables weighted
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byeigenvectors; the observed
variables in FA are linear
combinations of the underlying
and unique factors.[10]
In PCA, the components yielded
are uninterpretable, i.e. they do
not represent underlying
constructs; in FA, the underlying
constructs can be labeled and
readily interpreted, given an
accurate model specification.[10]
[edit]Factor analysis in
marketing
The basic steps are:
Identify the salient attributes
consumers use to
evaluateproductsin this
category.
Usequantitative marketing
researchtechniques (suchassurveys) to collect data from a
sample of
potentialcustomersconcerning
their ratings of all the product
attributes.
Input the data into a statistical
program and run the factor
analysis procedure. The computer
will yield a set of underlying
attributes (or factors).
Use these factors to
constructperceptual mapsand
otherproduct positioningdevices.
[edit]Information collection
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The data collection stage is usually
done by marketing research
professionals. Survey questions ask
the respondent to rate a product
sample or descriptions of product
concepts on a range of attributes.
Anywhere from five to twenty
attributes are chosen. They could
include things like: ease of use,
weight, accuracy, durability,
colourfulness, price, or size. The
attributes chosen will vary depending
on the product being studied. Thesame question is asked about all the
products in the study. The data for
multiple products is coded and input
into a statistical program such
asR,SPSS,SAS,Stata,STATISTICA,
JMP, and SYSTAT.
[edit]Analysis
The analysis will isolate the underlying
factors that explain the data using a
matrix of associations.[13]
Factor
analysis is an interdependence
technique. The complete set of
interdependent relationships is
examined. There is no specification of
dependent variables, independent
variables, or causality. Factor analysis
assumes that all the rating data on
different attributes can be reduced
down to a few important dimensions.
This reduction is possible because
some attributes may be related to
each other. The rating given to any
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one attribute is partially the result of
the influence of other attributes. The
statistical algorithm deconstructs the
rating (called a raw score) into its
various components, and reconstructs
the partial scores into underlying factor
scores. The degree of correlation
between the initial raw score and the
final factor score is called a factor
loading.
[edit]Advantages
Both objective and subjectiveattributes can be used provided
the subjective attributes can be
converted into scores.
Factor analysis can identify latent
dimensions or constructs that
direct analysis may not.
It is easy and inexpensive.
[edit]Disadvantages
Usefulness depends on the
researchers' ability to collect a
sufficient set of product attributes.
If important attributes are
excluded or neglected, the value
of the procedure is reduced.
If sets of observed variables are
highly similar to each other and
distinct from other items, factor
analysis will assign a single factor
to them. This may obscure factors
that represent more interesting
relationships.[clarification needed]
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Naming factors may require
knowledge of theory because
seemingly dissimilar attributes
can correlate strongly for
unknown reasons.
[edit]Factor analysis in
physical sciences
Factor analysis has also been widely
used in physical sciences such
asgeochemistry,ecology,
andhydrochemistry.[14]
In groundwater quality management, it
is important to relate the spatial
distribution of different chemical
parameters to different possible
sources, which have different chemical
signatures. For example, a sulfide
mine is likely to be associated with
high levels of acidity, dissolved
sulfates and transition metals. These
signatures can be identified as factors
through R-mode factor analysis, and
the location of possible sources can
be suggested by contouring the factor
scores.[15]
Ingeochemistry, different factors can
correspond to different mineral
associations, and thus to
mineralisation.[16]
[edit]Factor analysis in
microarray analysis
Factor analysis can be used for
summarizing high-
http://en.wikipedia.org/w/index.php?title=Factor_analysis&action=edit§ion=25http://en.wikipedia.org/w/index.php?title=Factor_analysis&action=edit§ion=25http://en.wikipedia.org/w/index.php?title=Factor_analysis&action=edit§ion=25http://en.wikipedia.org/wiki/Geochemistryhttp://en.wikipedia.org/wiki/Geochemistryhttp://en.wikipedia.org/wiki/Geochemistryhttp://en.wikipedia.org/wiki/Ecologyhttp://en.wikipedia.org/wiki/Ecologyhttp://en.wikipedia.org/wiki/Ecologyhttp://en.wikipedia.org/wiki/Hydrochemistryhttp://en.wikipedia.org/wiki/Hydrochemistryhttp://en.wikipedia.org/wiki/Factor_analysis#cite_note-14http://en.wikipedia.org/wiki/Factor_analysis#cite_note-14http://en.wikipedia.org/wiki/Factor_analysis#cite_note-14http://en.wikipedia.org/wiki/Factor_analysis#cite_note-15http://en.wikipedia.org/wiki/Factor_analysis#cite_note-15http://en.wikipedia.org/wiki/Factor_analysis#cite_note-15http://en.wikipedia.org/wiki/Geochemistryhttp://en.wikipedia.org/wiki/Geochemistryhttp://en.wikipedia.org/wiki/Geochemistryhttp://en.wikipedia.org/wiki/Factor_analysis#cite_note-16http://en.wikipedia.org/wiki/Factor_analysis#cite_note-16http://en.wikipedia.org/wiki/Factor_analysis#cite_note-16http://en.wikipedia.org/w/index.php?title=Factor_analysis&action=edit§ion=26http://en.wikipedia.org/w/index.php?title=Factor_analysis&action=edit§ion=26http://en.wikipedia.org/w/index.php?title=Factor_analysis&action=edit§ion=26http://en.wikipedia.org/w/index.php?title=Factor_analysis&action=edit§ion=26http://en.wikipedia.org/wiki/Factor_analysis#cite_note-16http://en.wikipedia.org/wiki/Geochemistryhttp://en.wikipedia.org/wiki/Factor_analysis#cite_note-15http://en.wikipedia.org/wiki/Factor_analysis#cite_note-14http://en.wikipedia.org/wiki/Hydrochemistryhttp://en.wikipedia.org/wiki/Ecologyhttp://en.wikipedia.org/wiki/Geochemistryhttp://en.wikipedia.org/w/index.php?title=Factor_analysis&action=edit§ion=257/28/2019 Finally 1
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densityoligonucleotideDNA
microarraysdata at probe level
forAffymetrixGeneChips. In this case,
the latent variable corresponds to
theRNAconcentration in a sample.[17]
[edit]Implementation
Factor analysis has been implemented
in several statistical analysis programs
since the
1980s:SAS,BMDPandSPSS.[18]
It is
also implemented in
theRprogramming language(with
thefactanalfunction) and inOpenOpt.
Rotations are implemented in
the GPArotation R package.
[edit]See also
Wikimedia Commons has
media related to: Factor
analysis
Design of experiments
Formal concept analysis
Higher-order factor analysis
Independent component analysis
Multilinear PCA
Multilinear subspace learning
Non-negative matrix factorization
Perceptual mapping
Product management
Q methodology
Recommendation system
Varimax rotation
[edit]References
http://en.wikipedia.org/wiki/Oligonucleotidehttp://en.wikipedia.org/wiki/Oligonucleotidehttp://en.wikipedia.org/wiki/DNA_microarrayshttp://en.wikipedia.org/wiki/DNA_microarrayshttp://en.wikipedia.org/wiki/DNA_microarrayshttp://en.wikipedia.org/wiki/DNA_microarrayshttp://en.wikipedia.org/wiki/Affymetrixhttp://en.wikipedia.org/wiki/Affymetrixhttp://en.wikipedia.org/wiki/Affymetrixhttp://en.wikipedia.org/wiki/RNAhttp://en.wikipedia.org/wiki/RNAhttp://en.wikipedia.org/wiki/Factor_analysis#cite_note-17http://en.wikipedia.org/wiki/Factor_analysis#cite_note-17http://en.wikipedia.org/wiki/Factor_analysis#cite_note-17http://en.wikipedia.org/w/index.php?title=Factor_analysis&action=edit§ion=27http://en.wikipedia.org/w/index.php?title=Factor_analysis&action=edit§ion=27http://en.wikipedia.org/w/index.php?title=Factor_analysis&action=edit§ion=27http://en.wikipedia.org/wiki/SAS_(software)http://en.wikipedia.org/wiki/SAS_(software)http://en.wikipedia.org/wiki/SAS_(software)http://en.wikipedia.org/wiki/BMDPhttp://en.wikipedia.org/wiki/BMDPhttp://en.wikipedia.org/wiki/BMDPhttp://en.wikipedia.org/wiki/SPSShttp://en.wikipedia.org/wiki/SPSShttp://en.wikipedia.org/wiki/Factor_analysis#cite_note-18http://en.wikipedia.org/wiki/Factor_analysis#cite_note-18http://en.wikipedia.org/wiki/Factor_analysis#cite_note-18http://en.wikipedia.org/wiki/R_(programming_language)http://en.wikipedia.org/wiki/R_(programming_language)http://en.wikipedia.org/wiki/R_(programming_language)http://en.wikipedia.org/wiki/R_(programming_language)http://en.wikipedia.org/wiki/OpenOpthttp://en.wikipedia.org/wiki/OpenOpthttp://en.wikipedia.org/wiki/OpenOpthttp://en.wikipedia.org/w/index.php?title=Factor_analysis&action=edit§ion=28http://en.wikipedia.org/w/index.php?title=Factor_analysis&action=edit§ion=28http://en.wikipedia.org/w/index.php?title=Factor_analysis&action=edit§ion=28http://commons.wikimedia.org/wiki/Category:Factor_analysishttp://commons.wikimedia.org/wiki/Category:Factor_analysishttp://commons.wikimedia.org/wiki/Category:Factor_analysishttp://commons.wikimedia.org/wiki/Category:Factor_analysishttp://en.wikipedia.org/wiki/Design_of_experimentshttp://en.wikipedia.org/wiki/Design_of_experimentshttp://en.wikipedia.org/wiki/Formal_concept_analysishttp://en.wikipedia.org/wiki/Formal_concept_analysishttp://en.wikipedia.org/wiki/Higher-order_factor_analysishttp://en.wikipedia.org/wiki/Higher-order_factor_analysishttp://en.wikipedia.org/wiki/Independent_component_analysishttp://en.wikipedia.org/wiki/Independent_component_analysishttp://en.wikipedia.org/wiki/Multilinear_principal_component_analysishttp://en.wikipedia.org/wiki/Multilinear_principal_component_analysishttp://en.wikipedia.org/wiki/Multilinear_subspace_learninghttp://en.wikipedia.org/wiki/Multilinear_subspace_learninghttp://en.wikipedia.org/wiki/Non-negative_matrix_factorizationhttp://en.wikipedia.org/wiki/Non-negative_matrix_factorizationhttp://en.wikipedia.org/wiki/Perceptual_mappinghttp://en.wikipedia.org/wiki/Perceptual_mappinghttp://en.wikipedia.org/wiki/Product_managementhttp://en.wikipedia.org/wiki/Product_managementhttp://en.wikipedia.org/wiki/Q_methodologyhttp://en.wikipedia.org/wiki/Q_methodologyhttp://en.wikipedia.org/wiki/Recommendation_systemhttp://en.wikipedia.org/wiki/Recommendation_systemhttp://en.wikipedia.org/wiki/Varimax_rotationhttp://en.wikipedia.org/wiki/Varimax_rotationhttp://en.wikipedia.org/w/index.php?title=Factor_analysis&action=edit§ion=29http://en.wikipedia.org/w/index.php?title=Factor_analysis&action=edit§ion=29http://en.wikipedia.org/w/index.php?title=Factor_analysis&action=edit§ion=29http://en.wikipedia.org/w/index.php?title=Factor_analysis&action=edit§ion=29http://en.wikipedia.org/wiki/Varimax_rotationhttp://en.wikipedia.org/wiki/Recommendation_systemhttp://en.wikipedia.org/wiki/Q_methodologyhttp://en.wikipedia.org/wiki/Product_managementhttp://en.wikipedia.org/wiki/Perc