CEW Lipid Biosynthesis 2009 - Home | Metabolomics Biosynthesis_2009.pdf · Lipid Biosynthesis Craig Wheelock February 2nd, 2009 Questions? Comments? [email protected]

Lipid Biosynthesis

Craig Wheelock February 2nd, 2009

Questions? Comments? [email protected]

Why do we care about lipids?• ~80% of European population overweight• ~ 1/3 obese

=130 million obese adults in EU6% of total health costs10-13% of deaths in Europe

Diseases of dyslipidemia are one of the greatest health challenges of the 21st century

Contributes to diabetes, coronary heart disease, hypertension, stroke & cancer

Outline• Lipid overview: synthesis and structure• Fatty acids• Eicosanoids• Break . . . . • Triacylglycerols• Phospholipids• Cholesterol• Bile acids, enterohepatic circulation• Summary

What is a lipid?Classical definition:

biological molecule that is soluble in organic solvent, but insoluble in water

Vary greatly in structure and function

Modern (specific) definition:fatty acids and their derivatives, and substances related

biosynthetically or functionally to these compounds

More specific definition:Hydrophobic small molecules that originate by carbanion-

based condensations of thioesters (fatty acids, polyketides, etc.) and/or by carbocation-based condensations of isoprene

units (prenols, sterols, etc)

Some typical lipids

In addition:cholesterol, cofactors, vitamins, bile acids,hormones, eicosanoids, other signaling molecules, etc………

Free

Fat

ty A

cids

Sphingomyelins PC

PE

PSTGs

DGs

MGs

PI

Lyso-PC

Cardiolipin

Cholesteryl Esters

Plasmologens & Ether phospholipids

PSS2PSD

PEMTPSS1

18:2n6 18:3n3

18:4n3

20:4n3

20:5n3 22:5n3

22:6n3

24:5n3

24:6n318:3n6

20:3n6

20:4n6

D6D

Elongase

D5D

Elongase

Elongase

D6D

β-oxidation

SS

Acetyl-CoA

16:0n9

18:0n9

18:1n9

ACC/FAS

Elongase

D9D

AT

AT

AT

CLS

ACATLPAT

CEPT1

EPT

EPT = ethanolamine-phosphotransferaseCEPT1 = choline/EPT-1AT = acyltransferaseLCAT = lecithin cholesterol ATACAT = acyl coenzyme-A:cholesterol transferaseLPAT = Lyso-PC ATPEMT = PE methyl transferasePSD = PS decarboxylasePSS = PS synthaseCLS = cardiolipin synthaseSS = sphingomelin synthaseACC/FAS=acetyl-CoA carboxylaseFAS = fatty acid synthase

CPT

PC = phosphatidyl cholinePE = phosphatidyl ethanolaminePS = phosphatidyl serinePI = phosphatidyl inostitolMGs = monoacylglycerolsDGs = diacylglcerolsTGs = triacylglycerols

LCAT, PLA2

Phosphatidicacid

Glycerol-3-P

Var

ying

Lip

id C

lass

Fatty acids(FA)

• compounds synthesized in nature via condensation of malonyl coenzyme A units by a fatty acid synthase complex

• contain even numbers of carbon atoms in straight chains (commonly C14- C24)

• may be saturated or unsaturated• can contain variety of substituent groups

Fatty Acids

• Single(σ)-bonded carbon chains with a terminal carboxylic acid:

• Produced de novo by animals and plants• Can contain double(π)-bonded carbons which

are inserted by desaturases

COOH

α

βω

cis

Unsaturation & shorter chain• ↓ melting point• ↑ membrane fluidity (cis bond gives the

”kink” in the carbon chain)

Nomenclature• Fatty acids are sigma-bonded carbon chains

with a carboxylic acid functional group

COOH

Nomenclature• Individual fatty acids can be identified by

one of two numerical nomenclature systems

COOH

1 3 5 7 9 11 13 15 17

n-DesignationCarbon numbering starts from methyl endn-DesignationCarbon numbering starts from methyl end

2 4 6 8 10 12 14 16 18 stearicacid18:0

Nomenclature• Individual fatty acids can be identified by

one of two numerical nomenclature systems

1 3 5 7 9 11 13 15 171 3 5 7 9 11 13 15 17 nn--DesignationDesignation

Δ-DesignationCarbon numbering starts from carboxyl groupΔ-DesignationCarbon numbering starts from carboxyl group

17 15 13 11 9 7 5 3 1

18 16 14 12 10 8 6 4 2

COOH stearicacid18:0

Nomenclature• Standard nomenclature (arachidonic acid):

20:4 n6

20:4 Δ5,8,11,14

Carbon chain lengthNumber of double bondsPosition of double bonds

n-Designation

Δ-Designation

1581114

ω1 6

Desaturation of Fatty Acidscomplex of 3 membrane proteins in E.R.

series of desaturase enzymes creates position-specific double bonds

oleic acid – 18:1, cisstearic acid –18:0

Fatty Acid Metabolism

ΔΔ99

• The first desaturation of a saturated fatty acid is always at the Δ9 position

Δ9

COOH

18 16 14 12 10 8 6 4 2

oleicacid

18:1n9


ΔΔ99

• Plants can also desaturate at the Δ12

Δ9

COOH

ΔΔ1212

18 16 14 12 10 8 6 4 2

linoleicacid

18:2n6


Δ9

• Plants can also desaturate at the Δ12 and the Δ15 carbon

Δ9

Δ12

COOH

Δ15

18 16 14 12 10 8 6 4 2

α-linolenicacid

18:3n3


Δ9

• Animals desaturate plant-derived poly unsaturated fatty acids (PUFAs) at the Δ6 carbon

Δ9

Δ12Δ15

COOH

Δ6

18 16 14 12 10 8 4 2

stearidonicacid

18:4n3

COOH


Δ9

• To add another double bond, animals must first elongate the fatty acid

Δ12Δ15

Elongase

COOH

Δ9 Δ6

20 18 16 14 12 10 4 26

eicosatetraenoicacid

20:4n3


Δ9

• Animals can then add a Δ5 double bond

Δ12Δ15

COOH

Δ5Δ9 Δ6

20 18 16 14 12 10 4 26

eicosapentaenoicacid

20:5n3


Δ9

• To make docosahexaenoic acid (DHA, 22:6n3) animals must further elongate the acyl chain to 22 carbons

Δ12Δ15

Δ5Δ9 Δ6

COOH

Elongase

COOH

20 18 16 14 12 4 26822

docosapentaenoicacid

22:5n3


Δ9

• Another double bond is inserted at the Δ4 position

Δ12Δ15

Δ5Δ9 Δ6

COOHCOOH

Δ4?

20 18 16 14 12 26822


22:5n3


Δ9

• BUT THERE IS NO Δ4 DESATURASE

Δ12Δ15

Δ5Δ9 Δ6

COOHCOOH

Δ4?x20 18 16 14 12 26822


22:5n3


Δ9

• To make DHA (22:6n3) the fatty acid must first be elongated again to a 24 carbon chain

Δ12Δ15

Δ5Δ9 Δ6

COOHCOOH

Elongase

COOH

20 18 16 14 4 26822 1024

tetracosapentaenoicacid

24:5n3

Fatty Acid Metabolism• Then the chain can be acted upon again

by the Δ6 desaturase yielding 24:6n3

Δ9Δ12Δ15

Δ5Δ9 Δ6

COOHCOOHCOOHCOOH

Δ6

COOH20 18 14 4 2822 1024

tetracosahexaenoicacid

24:6n3


Δ9

• The last step in DHA synthesis is a 2-carbon chain shortening by peroxisomal β-oxidation

Δ12Δ15

Δ5Δ9 Δ6

COOH

Δ6

COOHCOOH

docosahexaenoicacid

22:6n3

20 18 16 14 12 26822

Plants

• Fatty acids with double bonds on the methylene side of an original Δ9 double bond (n3 and n6 bonds) are of plant origin


Δ9Δ12Δ15

Δ5Δ9 Δ6

COOH

Δ6

COOH

Animals

• Animals then modify these polyunsaturated fatty acids utilizing their own distinct set of desaturases.


Δ9Δ12Δ15

Δ5Δ9 Δ6 Δ6

COOH

Fatty Acid Metabolism• Why two designations?

– One is useful to describe biochemical reactions

– One is useful to track families of fatty acids in nutrition

vs

Biochemical Reactions• Desaturases and elongases act from the

carboxy-terminus of the fatty acid

• Therefore, the Δ-designation is useful to describe the biochemistry of fatty acid metabolism

Δ9

COOHDouble bond inserted 9 carbons from COOH

Cannot change n6

Nutrition• The n-designation is useful as it allows

nutritionists to link diet with tissue fatty acid composition

COOH

Δ9Δ12Linoleic acid (18:2n6)

n6

Omega fatty acids (ω)• Nomenclature based upon position of the first double

bond relative to the carbon chain terminal methyl• Omega-3 fatty acids cannot be synthesized de novo

by humans, obtained from fish

•Omega-6 fatty acids are obtained from diet (grains, etc) and can be synthesized

docosahexaenoic acid (DHA)

arachidonic acid (AA)

Fatty acid modification

• Activated FFA (acyl-CoA)• Elongation• β-oxidation• Desaturation- up to C9 in animals- >C9 occurs only in plants

E/Δ6/β-ox

Essential FA Metabolism

18:3n6 18:4n3

20:3n6

20:4n6

18:2n6

22:4n6

22:5n6

20:2n6

22:2n6

20:4n3

20:5n3

18:3n3

22:5n3

22:6n3

20:3n3

22:3n3

Δ6

Δ5

Elongase

Elongase

De Novo Metabolism

16:1n7

18:1

18:0

16:0

20:0

24:0

22:0

18:1n9

24:1

20:1

22:1Elongase

Elongase

Δ6Elongase

Elongase

Δ9 Desaturase

FAS

Δ5

18:2

20:2

20:3n9

Trans-fatcontains “trans” vs. “cis” bond

saturated cis double bond trans double bond

Oleic acid – C18, cisMelting point = 13°C

Elaidic acid – C18, transMelting point = 45°C

Ex) Linoleate, linoleic acid 18:2n6

cis,cis-Δ9,Δ12 –octadecatrienoate

an ω-6 fatty acid

Fatty acid biosynthesis•Where? In the cytoplasm in: liver, adipose

and mammary glands

•How? Stepwise incorporation of 2 carbon atoms from Acetyl-CoA

•Cost? both ATP and NADPH

Overall equation for synthesis of 16:0 (palmitate, hexadecanoate)

8 Ac-CoA + 7ATP + 14 NADPH + 14H+

16:0 + 8 CoA + 7ADP + 7Pi + 14NADP+ + 6H2O

16 14 12 10 8 6 4 2

Fatty acid synthase system

Domain 1:AT acetyl transferaseMT malonyl transferaseCE condensing enzyme

(=β-ketoacyl synthase, KS)

Domain 2:DH dehydrataseER enoyl reductaseKR β-ketoacyl reductaseACP acyl carrier protein

Domain 3:TE thioesterase

”activated 2-carbon donor”committed step in FA synthesis

Coenzyme A (CoA-SH)

the thioester

Acetyl-CoA

Malonyl-CoA

Acetyl-CoA-carboxylase (ACC)the committed step in FA synthesis

Elongation phase of FA synthesis

Acetyl transacylaseAcetyl CoA + ACP ↔ acetyl ACP + CoA

Malonyl transacylaseMalonyl CoA + ACP ↔ malonyl ACP + CoA

ACP – acyl carrier protein

single polypeptide chain of 77 residues

--SHSH

Fatty acid synthasereaction

sequence

2 carbons

3 carbons+

4 carbons

4 carbons

7 rounds gives:16:0, palmitate

”fatty acid machine”

AT = acetyl transferaseMT = malonyl transferaseKS = β-ketoacyl synthase,

(CE condensing enzyme)HD = dehydrataseER = enoyl reductaseKR = β-ketoacyl reductaseACP = acyl carrier protein

AT = acetyl transferaseMT = malonyl transferaseKS = β-ketoacyl synthase,

(CE condensing enzyme)HD = dehydrataseER = enoyl reductaseKR = β-ketoacyl reductaseACP = acyl carrier protein

Ex) The complete reaction for synthesis of 16:0

8 Ac-CoA + 7ATP + 14 NADPH + 14H+

16:0 + 8 CoA + 7ADP + 7Pi + 14NADP+ + 6H2O

= 1 Ac-CoA + 7 Mal-CoA

Transfer of Acetyl-CoA to the cytosol

ATP

ADP + Pi

Citrate + ATP + CoA +H2O → acetyl CoA + ADP + Pi + oxaloacetate

→FA synthesized in cytoplasm, acetyl CoA formed frompyruvate in mitochondria

2 Ways to Generate NADPH

1. Malic enzyme(NADP+-linked

malate enzyme)

2. HMP-shunt(hexose

monophosphate)

occurs exclusively in the cytoplasm = accounts for 60% of NADPH

Fatty acid synthesis requires the integration of multiple metabolic pathways

EICOSANOIDS

AA is metabolized to inflammatory mediators

Many current anti-inflammatory & pain medicines inhibit some portion of the AA pathway

Eicosanoid hormones are derived from PUFAs

• Arachidonic acid (20:4n6) is major precursor of multiple signal molecules: prostaglandins (PG), prostacyclins, thromboxanes (TX) and leukotrienes (LT)

• PGs = 20 carbon fatty acids containing a 5-carbon ring

• PGs stimulate inflammation, regulate blood flow, control ion transport, modulate synaptic transmission & induce sleep

PGH2

Importance of eicosanoids• Nobel Prize in 1982 for discovery of PG

biological role and 1990 for PG synthesis• PGs are found in almost all tissues & organs • Ex of PG antagonists:

– NSAIDs (inhibit COX → aspirin, ibuprofen) – corticosteroids (inhibit phospholipase A2 production)

• TXs are vasoconstrictors & hypertensive agent– role in thrombosis (clot in blood vessel)

• LTs & cysteinyl-LTs important in inflammation– asthma, psoriasis, anaphylaxis & atherosclerosis

Eicosanoid-based medicines

Pulmonary hypertensionPGI analog

Asthma, seasonal allergiesLT receptor antagonist

Stomach ulcers, labor inductionPGE1 analogPulmonary arterial hypertensionPGI2 analog

Labor inductionPGE2

Labor induction PG analogGlaucoma, ocular hypertensionPG analog

Pulmonary hypertension, avoidingreperfusion injury

PGI1 analogMedical conditionType

PGH2 promotes inflammation and modulates gastric acid secretion

18:3n6

20:3n6

20:4n6 (arachidonic acid)

18:2n6 (linoleic acid)Δ6

Δ5

Elongase

PGH2 synthase-1 is held in the membrane by α-helices coated with hydrophobic side chains

Integral membrane protein

AA is hydrophobic and is funneled thru protein channel

Ser 530

Serine

PGH2 synthase-1

The Arachidonic Acid Cascade Contains 3 Profiles

HOO COX

Trioxilin A3

Hepoxilin A3

sEH

PGH2

CYP2C,2JEETs

15-HETE

12-HETE8-HETE

5-HETE

5-oxo-ETE

LTB4

LTA4

Leukotrienes

20-HETE

CYP4ADHETs

sEH

TXA2

TXB2 PGF2PGE2

PGB2

6-keto-PGF1

Prostacyclin

15-LOX12-LOX

TXA2Synthase

5-LOXLTA4

SynthaseLTA4Hydrolase

PGI2Synthase

InflammatoryProliferative

VasoconstrictiveCoagulation

Anti-InflammatoryAnti-Proliferative

VasodilatoryAnti-coagulation

Modulation of Glucose Metabolism

15-oxo-ETE

PGD2

PGJ2

15-dPGJ2

11-dehydroTXB2

Cytochrome P450-Dependent MetabolismLipoxygenase-Dependent MetabolismCyclooxygenase-Dependent Metabolism

Biosynthesis of membrane lipids and steroids

Triacylglycerol (TAG)= ester of glycerol + 3 FA

Glycerophospholipidconstructed of 4 components

Membrane

Phospholipids (PL)major class of membrane lipids

hydrophobic hydrophilic

1st step in synthesis of phospholipids (PLs) and triacylglycerols (TAGs) is the

synthesis of phosphatidate

Phosphatidateis built from L-glycerol-3-

phosphate andactivated fatty acids

TAG synthesis proceeds via DAG

Triacylglycerols (TAG)• Stored energy in fat cells

– adipose cells• More energy/gram than carbohydrates

– 9 kcal/g compared to 4 kcal/g– stored in anhydrous form (carbs 2g H2O/g)=> fat has 6.75x > energy than hydrated glycogen

TAG cycle

Glycerophospholipids (phosphoglycerides)glycerol-based PLs – main component ofbiological membranes

PA

PE

PCPS

PG

PIP2

CL

Biological role of PLs

• PC most common lipid in mammals

• PS is 10% of total PLs in mammals

• CL located in inner mitochondrial membrane (role in oxidative phosphorylation)

• Ampipathic = possesses both hydrophilicand hydrophobic properties

Strategy 1Alcohol activation of CDP

Strategy 2DAG activation of CDP

PL synthesis requires an activated intermediate

CDP=cytidine diphosphate

PLsynthesis

fromactivatedalcohol

Strategy 1

CDP=cytidinediphosphate

PLsynthesis

fromactivated

DAG

Strategy 2

CTP=cytidine triphosphate

CDP=cytidine diphosphate

CMP=cytidine monophosphate

Glycerophospholipid synthesisPE and PC: Strategy 1PI, PG, cardiolipin (CL): Strategy 2

PS, PE, PC are “coupled”PS from PE or PCPC from PE (+ 3 adoMet)

Sphingolipidscontain sphingosine backbone (not glycerol)

glycerophospholipid

Membrane lipid = concentration ↑ in central nervous system

Pathway integration for TAG and PL synthesisphosphatidate is produced from multiple pathways and is further incorporated into TAGs or PLs

Cholesterol biosynthesismodulates fluidity in animal membranes and is precursor of steroid hormones

In 4 steps ....

A B

C D1

4

7

927

20

14

where isoprene is the key intermediate

Isoprene

1. Condensation of 3 Ac-CoAto mevalonate

2. Conversion of mevalonateto activated isoprene (3-isopentenyl pyrophosphate)

3. Condensation of 6 activated isoprene units tosqualene

4. Cyclization

Step 1: Condensation of 3 Ac-CoAto mevalonate (6 carbons)

Step 2: Conversion of mevalonateto activated isoprenes (5 carbons)

Step 3:Cond. ofisoprene-units to

squalene(linear,

30 carbons)

5 + 5

=10

+5

= 15

+ 15

= 30

Step 4: Cyclization (4 rings)

19 steps

All 27 carbons in cholesterol are dervied from Ac-CoA

1. Condensation of 3 Ac-CoA to mevalonate

limiting step!!2. Conversion of

mevalonate toactivated isoprene (3-isopoentenyl pyrophosphate)

3. Condensation of 6 activated isoprene units to squalene

4. Cyclization

HMG-CoA reductase

Regulation of HMG-CoA-reductase(integral membrane protein in ER)

1. Feedback – cholesterol stimulates proteolysis2. Hormonal – inactivated by phosphorylation,

activated by dephosphorylation3. Transcription - via SREBP (rate of synthesis)

sterol regulatory element binding protein4. Therapeutics - mevalonate analogs

competitive inhibitor – statinslovastatin, atorvastatin - Lipitor

SREBP pathway = sterol regulatory binding element protein

Cholesterol is a precursor to bilesalts (and to steroid

hormones and vitamin D)

cholic acid

Enterohepaticcirculation

circulation of bile from the liver, to the small intestinewhere it aids in fat digestion

hepatocytes metabolize cholesterolto lipid-soluble bile acids → bile salts

conjugated to glycine or taurine

the enterohepatic circulation of bile acids may be disrupted as a way to

lower cholesterol

Free

Fat

ty A

cids

Sphingomyelins PC

PE

PSTGs

DGs

MGs

PI

Lyso-PC

Cardiolipin

Cholesteryl Esters

Plasmologens & Ether phospholipids

PSS2PSD

PEMTPSS1

18:2n6 18:3n3

18:4n3

20:4n3

20:5n3 22:5n3

22:6n3

24:5n3

24:6n318:3n6

20:3n6

20:4n6

D6D

Elongase

D5D

Elongase

Elongase

D6D

β-oxidation

SS

Acetyl-CoA

16:0n9

18:0n9

18:1n9

ACC/FAS

Elongase

D9D

AT

AT

AT

CLS

ACATLPAT

CEPT1

EPT

EPT = ethanolamine-phosphotransferaseCEPT1 = choline/EPT-1AT = acyltransferaseLCAT = lecithin cholesterol ATACAT = acyl coenzyme-A:cholesterol transferaseLPAT = Lyso-PC ATPEMT = PE methyl transferasePSD = PS decarboxylasePSS = PS synthaseCLS = cardiolipin synthaseSS = sphingomelin synthaseACC/FAS=acetyl-CoA carboxylaseFAS = fatty acid synthase

CPT

PC = phosphatidyl cholinePE = phosphatidyl ethanolaminePS = phosphatidyl serinePI = phosphatidyl inostitolMGs = monoacylglycerolsDGs = diacylglcerolsTGs = triacylglycerols

LCAT, PLA2

Phosphatidicacid

Glycerol-3-P

Var

ying

Lip

id C

lass

What is a lipid?Classical definition:

biological molecule that is soluble in organic solvent, but insoluble in water

Specific structural-based definition

Modern (specific) definition:fatty acids and their derivatives, and substances related

biosynthetically or functionally to these compounds

More specific definition:Hydrophobic small molecules that originate by carbanion-

based condensations of thioesters (fatty acids, polyketides, etc.) and/or by carbocation-based condensations of isoprene

units (prenols, sterols, etc)

Lipid Biosynthesis - summary• Lipids overview classification, structure, synthesis• Fatty acids in liver (fat) and cyotosol; Mal-CoA;

multifunctional enzyme; modified in ER• Eicosanoids important signaling molecules; play

roles in pain and inflammation• Triacylglycerols in liver, fat, and intestine; energy

storage; phosphatidate; dynamic equilibrium• Phospholipids in almost all cells; phosphatidate, 2

strategies for synthesis, membrane components• Cholesterol in all cells; mostly liver, 4 steps,

from Ac-CoA via isoprene, HMG-CoA reductase• Bile acids important in fat digestion, enterohepatic

circulationWhew…….

• http://www.cyberlipid.org/• http://www.lipidlibrary.co.uk/• http://www.lipidmaps.org/• http://www.metabolomics.se/

– (contains downloadable file of today’s lecture under the section “Courses”)

CEW Lipid Biosynthesis 2009 - Home | Metabolomics Biosynthesis_2009.pdf · Lipid Biosynthesis Craig Wheelock February 2nd, 2009 Questions? Comments? [email protected]

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