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Vein Leaf cross section Mesophyll CO 2 O 2 Stomata A. Structures of PS Site of PS in plants: mostly in leaves in chloroplasts
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A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

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Page 1: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

Vein

Leaf cross section

Mesophyll

CO2 O2Stomata

A. Structures of PS• Site of PS in plants:

• mostly in leaves• in chloroplasts

Page 2: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

Inside the chloroplast

• Identify the structures in the diagram

Page 3: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

Chloroplast

Mesophyll

5 µm

Outer membrane

Inner membrane

Thylakoid intermembrane

space

ThylakoidGranumStroma

1 µm

• Chloroplasts

• thylakoids

• grana

• stroma

Page 4: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

6H2O + 6CO2 ------> C6H12O6+ 6O26 waters

6 carbon dioxides(plus light E, makes...)

1 glucose6 oxygen

B. The Net Reaction of Photosynthesis

Page 5: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

Net Reaction• photolysis (hydrolysis) of water

• e- of H --> sugar• O --> O2

6 CO2 12 H2OReactants:

Products: C6H12O6 6 H2O 6 O2

Figure 10.4Photosynthesis is a redox process

Water is oxidized, carbon dioxide is reduced

Page 6: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

• we will stay (mostly) conceptual

• follow the energy

II. PS Overview

Page 7: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

• Occur in the inter membrane space of thylakoids1. absorption of photons generates excited e-

2. split water3. release oxygen4. produce ATP

a. ETC uses e- from PSII to make proton gradientb. ATP synthase in thylakoid membranes makes ATP

5. e- from PSI reduce NADP• E transfer

A. Light Dependent Rxns

Page 8: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

• aka The Calvin cycle• in the stroma1. carboxylation of RuBP to make

Glyceraldehyde-3-Phosphate2. Glyceraldehyde-3-Phosphate —> G3P

• Req ATP for energy• Req NADPH for reducing power

3. G3P (aka triose phosphate)• triose phosphate used to regenerate RuBP &

make carbs• Req ATP to regenerate RuBP

B. Light Independent Rxns

Page 9: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate
Page 10: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

PS Overview

Page 11: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

PS Overview

Page 12: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

PS Overview

Page 13: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

III. Closer look at LD Rxns

Page 14: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

• How does the chloroplast absorb light?

• Pigments

• chlorophyll a,b

• accessory pigments

Photosynthetic Pigments: The Light Receptors

Page 15: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate
Page 16: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

Excited state

Ene

rgy

of e

lect

ion

Heat

Photon (fluorescence)

Chlorophyll molecule

Ground statePhoton

e–

Figure 10.11 A

• When a pigment absorbs light

• ground state --> excited state (unstable)

Excitation of Chlorophyll by Light

Page 17: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

Photosystems• Light harvesting

complexes• aka “antenna

pigment mols”• pigment mols

bound by proteins

• funnel energy to reaction center

• e- gets bumped• p680 (PSII)• p700 (PSI)

Primary election acceptor

Photon

Thylakoid

Light-harvesting complexes

Reaction center

Photosystem

STROMA

Thyl

akoi

d m

embr

ane

Transfer of energy

Special chlorophyll a

molecules

Pigment molecules

THYLAKOID SPACE (INTERIOR OF THYLAKOID)Figure 10.12

e–

Page 18: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

Mill makes ATP

ATP

e–

e–e–

e–

e–

Phot

on

Photosystem II Photosystem I

e–

e–

NADPH

Phot

on

Figure 10.14

Analogy for the Lt Rxns

Page 19: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

Noncyclic electron flow• Produces NADPH, ATP, and oxygen

Page 20: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate
Page 21: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate
Page 22: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

© 2014 Pearson Education, Inc.

The biomass (dry weight) of a tree comes primarily from

A. soil. B. water. C. air. D. organic fertilizer (manure, detritus). E. light.

Page 23: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

© 2014 Pearson Education, Inc.

The light reactions, which involve the very hydrophobic chlorophyll, are located here in the chloroplast.

A.

B.C. (lumen)

E.

D.

Page 24: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

© 2014 Pearson Education, Inc.

What colors of light will drive photosynthesis by green plants most efficiently?

A. red only B. yellow only C. green only D. blue only E. red and blue

Page 25: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

© 2014 Pearson Education, Inc.

How are the light reactions and the Calvin cycle connected?

A. The light reactions provide ATP to the Calvin cycle, and the Calvin cycle provides NADPH for the light reactions.

B. The light reactions provide ATP and NADPH to the Calvin cycle, and the Calvin cycle returns ADP and NADP+ to the light reactions.

C. The light reactions provide ATP and NADPH to the Calvin cycle, and the Calvin cycle returns reduced sugars to the light reactions.

D. The light reactions provide NADPH to the Calvin cycle, and the Calvin cycle provides RuBP to the light reactions.

E. The light reactions provide RuBP to the Calvin cycle, and the Calvin cycle returns G3P to the light reactions.

Page 26: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

• Occurs:

• Sim to Citric Acid Cycle (aka Krebs) in CR

• opposite of anaerobic glycolysis

• 3 phases

• C-fixation

• Reduction

• Regeneration of the CO2 acceptor

Calvin Cycle

Page 27: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

The Calvin Cycle

Page 28: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

The Calvin Cycle• Starts w/ CO2 + enzyme Rubisco +RuBP

• 3 “turns” of Calvin make...

• 3-C sugar

• 6 “turns” = 1 glucose

Page 29: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

The Calvin Cycle• Three phases...

• Fixation

• CO2 + RuBP + Rubisco

• Reduction

• requires ATP (for E)

• requires H (from NADPH)

• produces 3-C sugars: G3P

• 1/6 of which form Glu

• Regeneration

• 5/6 of 3-C sugars regenerate RuBP

• requires ATP

Page 30: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

• aka Cyclic Phosphoryllation

• Under certain conditions

• ATP deficit

• excess NADPH, deficit of NADP+

• bumped e-’s take an alternative path

• generates ATP

Cyclic Electron Flow

Page 31: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

• Only photosystem I is used• Only ATP is produced (no O2 or NADPH)

Primary acceptor

Pq

Fd

Cytochrome complex

Pc

Primary acceptor

Fd

NADP+

reductaseNADPH

ATPFigure 10.15 Photosystem II Photosystem I

NADP+

Cyclic Electron Flow

Page 32: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

Effect of Light Intensity

• low light => not enough ATP, NADPH

• what would be rate limiting step in Calvin Cycle?

• unusual unless the plant is heavily shaded

Page 33: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

Effect of CO2 Concentration

• low CO2 => what would be rate-limiting step?

• this is a common limiting factor

Page 34: A. Structures of PSblogs.4j.lane.edu/sanderson/files/2018/10/01_PhotosynthesisNotes_IB-Bio-C.pdf1. carboxylation of RuBP to make Glyceraldehyde-3-Phosphate 2. Glyceraldehyde-3-Phosphate

Effect of Temperature

• low temps => rate of rxn = ____

• high temps => CO2 fixation doesn’t work