Searching and Accessing Full Text Journal Articles
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health careTHE FLORIDA STATE UNIVERSITY COLLEGE OF
MEDICINE Educating and developing exemplary physicians who practice patient-centered health
care
Searching and Accessing Full Text Journal Articles
Nancy Clark, Director of Medical Informatics
Susan Epstein, Public Services Librarian
FSU College of Medicine
Summer 2011 1
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Objectives for Session• Learners will
– Do PubMed search using primary functions – Use the new interface– Locate full articles from PubMed search– Perform Google Scholar Search– Save searches in NCBI
Summer 2011 2
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Handouts• PowerPoint• Worksheet for activity• Evaluations – Please complete Pre- Workshop
Assessment
Summer 2011 3
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Tutorials for PubMed
Summer 2011 4
Link to PubMed Tutorials
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
What is MEDLINE?• Database of bio-medical journals (medical, dental,
nursing, veterinary, …)• Old Index Medicus database• Service of National Library of Medicine (NLM)• 5,271 biomedical journals, most are peer reviewed • Nearly 18+ million citations (around 70,000
new/month)• Back to 1860s (primarily back to 1950s)
Summer 2011 5
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
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What is MEDLINE?• Articles are indexed by Real People.• Terms are assigned that come from a
Controlled Vocabulary (Thesaurus) called MeSH (Medical Subject Headings).
• MeSH includes sets of subheadings that apply to each term and uses markers to indicate which terms reflect the main focus of the article.
Summer 2011 6
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Where to Search MEDLINE?• Pubmed (NLM
interface)• OVID• MD Consult• Merck Medicus• Medscape
• Links to – Full text journal
articles– Books– EBM databases
Summer 2011 7
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health careTHE FLORIDA STATE UNIVERSITY COLLEGE OF
MEDICINE Educating and developing exemplary physicians who practice patient-centered health
care
Goal of Journal Search
A Few Good Articles
Summer 2011 8
Full text in as few clicks as possible
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Go to PubMed (EZProxy) • Under MedResources List• Click on Pubmed
Summer 2011 9
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Alternate Option• Use Search Engine Box to
start Pubmed Search• Type in Terms and start
Search
Summer 2011 10
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Summer 2011 11
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Get a Free NCBI Account. Why?• Alerting service
– Sends TOC of latest journals– Sends results of searches updates
• Save searches• Save collections of articles• Filters which break down your results for you
Summer 2011 12
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
First search of the evening: Author search
• Use initial(s) most frequently used by author• After 2002, full names (when included in the
journal itself) may be used• May search multiple authors on one search
line
Summer 2011 13
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Example of author search: Search for articles by Hurt MM and click the “Search” button
Summer 2011 14
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Let’s take a look at one article
Summer 2011 15
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Summer 2011 16
Abstract View
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
MeSH Terms
Summer 2011 17
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
MEDLINE View
Summer 2011 18
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Summer 2011 19
Direct Link to Full Text:
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
PubMed tutorial• 1 minute tutorial on a simple subject search• Note Advanced Search > Details screen to
understand the PubMed search engine in one picture!
Summer 2011 21
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Subject Search
Summer 2011 22
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Summer 2011 23
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Summer 2011 24
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Limits Results
Summer 2011 25
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Details – scroll down
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Summer 2011 27
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Search Strategies• Limit search
– By type of article– By date– By age group– By language
• Phrases in quotes: “focal nodular hyperplasia”
• AND, OR, NOT, parentheses
Summer 2011 28
““medication errors” AND medication errors” AND “quality improvement” “quality improvement” NOT (ambulatory OR NOT (ambulatory OR
“nursing home”)“nursing home”)
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Types of Articles• Editorials• Letters• Review Articles• Meta-Analysis
– Systematic reviews
• Clinical Guidelines
• Original Research– Case Studies– Case Control– Time Series– Cross sectional– Cohort– Control trials– Randomized Control
Trials
Summer 2011 29
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Advanced Search
Summer 2011 30
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Using Your Search History
Summer 2011 31
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Summer 2011 32
Put a reference in the Clipboard
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Clipboard• As you search• Add articles to Clipboard• Collect all the good articles there
Summer 2011 33
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Email Clipboard
Summer 2011 34
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Follow the link to the article
Summer 2011 35
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
When you see this…
Summer 2011 36
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Summer 2011 37
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health careTHE FLORIDA STATE UNIVERSITY COLLEGE OF
MEDICINE Educating and developing exemplary physicians who practice patient-centered health
care
When the pretty red button isn’t there….
Summer 2011 38
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Identify the Full Journal Title
Summer 2011 39
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Finding Full Text ArticlesPubmed Linked to full text? No…1. Medical E-Journals list from library
webpage? Not listed…2. FSU E-Journals from library webpage.
In electronic format? No...3. Interlibrary loans for titles not owned
by FSU: MedLibrary@med.fsu.edu
Summer 2011 40
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
All FSU E-Journals• Under Resources• Expand E-Journals• Click on
All FSU E-Journals
Summer 2011 41
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
FSU Libraries E-Journals
Summer 2011 42
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Interlibrary Loan
Summer 2011 43
Finding Journal Articles at FSU
Summer 2011 44
JOURNAL ARTICLES
Interlibrary
Loan
DOOR 1Direct Link to
full-textarticle. DOOR 2
Locate thee-journal
with Medical Library E-Journals list.
DOOR 3Locate the e-journal with Serials Solutions
INTER-LIBRARY LOAN
medlibrary@med.fsu.edu
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Endnote X2• $100 Software free to all faculty• Manages articles• Create libraries of articles by topic• Cite and format bibliography in papers/articles
• Contact librarians if interested
Summer 2011 45
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Google Scholar• Searches Pubmed, some of
our content, links to full text• In Search Engines box• Great for finding articles• Can’t save searches or email
searches
Summer 2011 46
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Summer 2011 47
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Saving Articles
Summer 2011 48
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Summer 2011 49
Find it @ FSU
Link goes to Serials Solutions
Link goes to FSU Online Catalog
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Exercise• Write a clinical question• What kinds of articles do you want to answer
this question• Locate first 10 articles on search• Find the full text articles• Print one of the full text articles
Summer 2011 50
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health careTHE FLORIDA STATE UNIVERSITY COLLEGE OF
MEDICINE Educating and developing exemplary physicians who practice patient-centered health
care
Open exercises: topics from group
Summer 2011 51
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Review of great features• Details• Limits• Advanced Search
– History (combine searches)• Related articles• View in Abstract View to find full article• Use NCBI to save searches
Summer 2011 52
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health careTHE FLORIDA STATE UNIVERSITY COLLEGE OF
MEDICINE Educating and developing exemplary physicians who practice patient-centered health
care
Using NCBI
Register and get a Username and Password
53Summer 2011
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Why get NCBI Account?• Save searches • Save citations in My Bibliography • Automatically update and e-mail search
results from your saved searches• Filter search results • Highlighting search terms
54Summer 2011
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
55Summer 2011
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
My NCBI
56Summer 2011
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
575757
Customize My NCBI• Tutorials: http://www.nlm.nih.gov/bsd/disted/myncbi.html • Saving Searches• Saving References• Customizing the Tabs• Highlighting Search Terms
Summer 2011
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
58
My NCBI – Saving a Search• Develop a search.• Click on ‘Save Search’.
April 29, 2008April 29, 2008 Medical Informatics Seminar Session 6Medical Informatics Seminar Session 6 5858Summer 2011
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
59
My NCBI – Saving a Search• Give name and
Save• Complete form for
email notification• ‘My NCBI’ puts the
search in your list.
Summer 2011
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
April 29, 2008April 29, 2008 Medical Informatics Seminar Session 6Medical Informatics Seminar Session 660
My NCBI – Saving References (1)• Develop a search.• Check the references you want to save.• Click on ‘Send To’ and select ‘Clipboard’.
6060Summer 2011
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
61
My NCBI – Saving References (2)• Go to the ‘Clipboard’• Click on ‘Send To’ and select Collections.
Summer 2011
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
62
My NCBI – Saving References (3)• Tell My NCBI what to call
the collection• Or Append to an existing
collection
April 29, 2008April 29, 2008 Medical Informatics Seminar Session 6Medical Informatics Seminar Session 6 6262Summer 2011
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
636363
My NCBI – Saving References (4)• To see the collection
or saved search, click on ‘My NCBI’ > Collections
• Can download collections into a reference manager such as EndNote or RefWorks.
Summer 2011
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
64
My NCBI – Customizing the Filters1. Click on ‘My NCBI’2. ‘Manage Filters’
Summer 2011
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
65
My NCBI – Customizing the Filters• Try “Browse Filters” to see different types
Summer 2011
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
66
My NCBI – Highlighting Search Terms
• Click on ‘NCBI Site Preferences’.
• Click on ‘Highlighting’• Pick colors
Summer 2011
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health careHave Journal Contents Sent (1)
1. Search ‘Journals Database’2. Enter a general subject term, e.g. “Pediatrics”, then
‘Go’.3. Click on a journal title to get information about that
journal.4. Continue with another search for a Journal, find and
select5. Click on ‘Send to’ and select ‘Search Box with OR’.
67Summer 2011
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
68Summer 2011
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
69
Have Journal Contents Sent (2)4. Click on ‘Search PubMed’.5. Click on ‘Save Search’, name it, and set up email
as earlier. 6. You will be notified when new articles are
published in these journals.
Summer 2011
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
70
Links to Other NCBI Databases• NCBI has other databases
that link to PubMed. (examples: CoreNucleotide,
Gene, HomoloGene, Protein, Protein)
7070Summer 2011
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Summary• Use Pubmed to Search for Articles on your
topics, My NCBI to manage• Use red FSU button to find articles• If no button: eJournals list > Serial Solutions >
Interlibrary loan• Any journal article you need, we will get
Summer 2011 71
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
The End• Practice• Call or e-mail us for individual help
850-644-3883 MedLibrary@med.fsu.edu
Summer 2011 72
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