THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE Educating and developing exemplary physicians who practice patient-centered health care Searching and Accessing Full Text Journal Articles Nancy Clark, Director of Medical Informatics Susan Epstein, Public Services Librarian FSU College of Medicine Summer 2011 1
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Searching and Accessing Full Text Journal Articles
Searching and Accessing Full Text Journal Articles . Nancy Clark, Director of Medical Informatics Susan Epstein, Public Services Librarian FSU College of Medicine. Objectives for Session. Learners will Do PubMed search using primary functions Use the new interface - PowerPoint PPT Presentation
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health careTHE FLORIDA STATE UNIVERSITY COLLEGE OF
MEDICINE Educating and developing exemplary physicians who practice patient-centered health
care
Searching and Accessing Full Text Journal Articles
Nancy Clark, Director of Medical Informatics
Susan Epstein, Public Services Librarian
FSU College of Medicine
Summer 2011 1
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Objectives for Session• Learners will
– Do PubMed search using primary functions – Use the new interface– Locate full articles from PubMed search– Perform Google Scholar Search– Save searches in NCBI
Summer 2011 2
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Educating and developing exemplary physicians who practice patient-centered health care
Tutorials for PubMed
Summer 2011 4
Link to PubMed Tutorials
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
What is MEDLINE?• Database of bio-medical journals (medical, dental,
nursing, veterinary, …)• Old Index Medicus database• Service of National Library of Medicine (NLM)• 5,271 biomedical journals, most are peer reviewed • Nearly 18+ million citations (around 70,000
new/month)• Back to 1860s (primarily back to 1950s)
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What is MEDLINE?• Articles are indexed by Real People.• Terms are assigned that come from a
Controlled Vocabulary (Thesaurus) called MeSH (Medical Subject Headings).
• MeSH includes sets of subheadings that apply to each term and uses markers to indicate which terms reflect the main focus of the article.
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Educating and developing exemplary physicians who practice patient-centered health care
Endnote X2• $100 Software free to all faculty• Manages articles• Create libraries of articles by topic• Cite and format bibliography in papers/articles
• Contact librarians if interested
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Google Scholar• Searches Pubmed, some of
our content, links to full text• In Search Engines box• Great for finding articles• Can’t save searches or email
searches
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Saving Articles
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
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Find it @ FSU
Link goes to Serials Solutions
Link goes to FSU Online Catalog
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Exercise• Write a clinical question• What kinds of articles do you want to answer
this question• Locate first 10 articles on search• Find the full text articles• Print one of the full text articles
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health careTHE FLORIDA STATE UNIVERSITY COLLEGE OF
MEDICINE Educating and developing exemplary physicians who practice patient-centered health
care
Open exercises: topics from group
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Review of great features• Details• Limits• Advanced Search
– History (combine searches)• Related articles• View in Abstract View to find full article• Use NCBI to save searches
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health careTHE FLORIDA STATE UNIVERSITY COLLEGE OF
MEDICINE Educating and developing exemplary physicians who practice patient-centered health
care
Using NCBI
Register and get a Username and Password
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Why get NCBI Account?• Save searches • Save citations in My Bibliography • Automatically update and e-mail search
results from your saved searches• Filter search results • Highlighting search terms
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
My NCBI
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Educating and developing exemplary physicians who practice patient-centered health care
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Customize My NCBI• Tutorials: http://www.nlm.nih.gov/bsd/disted/myncbi.html • Saving Searches• Saving References• Customizing the Tabs• Highlighting Search Terms
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My NCBI – Saving a Search• Develop a search.• Click on ‘Save Search’.
April 29, 2008April 29, 2008 Medical Informatics Seminar Session 6Medical Informatics Seminar Session 6 5858Summer 2011
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My NCBI – Saving a Search• Give name and
Save• Complete form for
email notification• ‘My NCBI’ puts the
search in your list.
Summer 2011
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
April 29, 2008April 29, 2008 Medical Informatics Seminar Session 6Medical Informatics Seminar Session 660
My NCBI – Saving References (1)• Develop a search.• Check the references you want to save.• Click on ‘Send To’ and select ‘Clipboard’.
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Educating and developing exemplary physicians who practice patient-centered health care
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My NCBI – Saving References (2)• Go to the ‘Clipboard’• Click on ‘Send To’ and select Collections.
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Educating and developing exemplary physicians who practice patient-centered health care
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My NCBI – Saving References (3)• Tell My NCBI what to call
the collection• Or Append to an existing
collection
April 29, 2008April 29, 2008 Medical Informatics Seminar Session 6Medical Informatics Seminar Session 6 6262Summer 2011
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Educating and developing exemplary physicians who practice patient-centered health care
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My NCBI – Saving References (4)• To see the collection
or saved search, click on ‘My NCBI’ > Collections
• Can download collections into a reference manager such as EndNote or RefWorks.
Summer 2011
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Educating and developing exemplary physicians who practice patient-centered health care
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My NCBI – Customizing the Filters1. Click on ‘My NCBI’2. ‘Manage Filters’
Summer 2011
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
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My NCBI – Customizing the Filters• Try “Browse Filters” to see different types
Summer 2011
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
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My NCBI – Highlighting Search Terms
• Click on ‘NCBI Site Preferences’.
• Click on ‘Highlighting’• Pick colors
Summer 2011
THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health careHave Journal Contents Sent (1)
1. Search ‘Journals Database’2. Enter a general subject term, e.g. “Pediatrics”, then
‘Go’.3. Click on a journal title to get information about that
journal.4. Continue with another search for a Journal, find and
select5. Click on ‘Send to’ and select ‘Search Box with OR’.
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Educating and developing exemplary physicians who practice patient-centered health care
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Educating and developing exemplary physicians who practice patient-centered health care
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Have Journal Contents Sent (2)4. Click on ‘Search PubMed’.5. Click on ‘Save Search’, name it, and set up email
as earlier. 6. You will be notified when new articles are
published in these journals.
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
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Links to Other NCBI Databases• NCBI has other databases
that link to PubMed. (examples: CoreNucleotide,
Gene, HomoloGene, Protein, Protein)
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
Summary• Use Pubmed to Search for Articles on your
topics, My NCBI to manage• Use red FSU button to find articles• If no button: eJournals list > Serial Solutions >
Interlibrary loan• Any journal article you need, we will get
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THE FLORIDA STATE UNIVERSITY COLLEGE OF MEDICINE
Educating and developing exemplary physicians who practice patient-centered health care
The End• Practice• Call or e-mail us for individual help