Pairwise Sequence Alignment (I) (Lecture for CS498-CXZ Algorithms in Bioinformatics) Sept. 22, 2005 ChengXiang Zhai Department of Computer Science University of Illinois,…

Searching Molecular Databases with BLAST Searching Molecular Databases with BLAST Basic Local Alignment Search Tool How BLAST works Interpreting search results The NCBI Web…

Local Alignment and BLAST Three key questions Query? Purpose? Database? BLAST – the way it used to look >gi|77630012|ref|ZP_00792598.1| COG0442: Prolyl-tRNA synthetase…

Pairwise Sequence Alignment (I) (Lecture for CS498-CXZ Algorithms in Bioinformatics) Sept. 22, 2005 ChengXiang Zhai Department of Computer Science University of Illinois,…

Modelling genomes Gil McVean Department of Statistics, Oxford Why would we want to model a genome? To identify genes Protein-coding RNA Small RNAs To identify regulatory…

Shuffling Non-Constituents Jason Eisner ACL SSST Workshop, June 2008 with David A. Smith and Roy Tromble syntactically-flavored reordering search methods Eisner, D.A.Smith,…

Why Align Sequences? DNA sequences (4 letters in alphabet) GTAAACTGGTACT… Amino acid (protein) sequences (20 letters) SSHLDKLMNEFF… Align them so we can search databases…

Pairwise Sequence Alignment (I) (Lecture for CS498-CXZ Algorithms in Bioinformatics) Sept. 22, 2005 ChengXiang Zhai Department of Computer Science University of Illinois,…

Shuffling Non-Constituents Jason Eisner ACL SSST Workshop (invited talk), June 2008 with David A. Smith and Roy Tromble syntactically-flavored reordering search methods Eisner,…

Possible Alignment Between Title III and LCAP Local Control Accountability Plan (LCAP) Connecting the Pieces Presented by Mary Stires Director School Support, SCOE 1/21/2014…