Documents BME 130 – Genomes Lecture 5 Genome assembly I The good old days.

Slide 1BME 130 – Genomes Lecture 5 Genome assembly I The good old days Slide 2 Administrivia Homework 1 – on the website today, due Friday; homework policy Student-led…

Documents Whole Genome Assembly. WGA 1. Screener 2. Overlapper 3. Unitigger, 4. Scaffolder, 5. Repeat...

Slide 1 Whole Genome Assembly Slide 2 WGA 1. Screener 2. Overlapper 3. Unitigger, 4. Scaffolder, 5. Repeat Resolver. Slide 3 Overlapper...looks for end-to end overlaps of…

Documents Assembly by alignment

* Assembly by alignment Instead of overlap-layout-consensus we use alignment-consensus * Alignment algorithm AMOScmp uses MUMmer MUMmer will be covered in detail by Adam…