Slide 1Toward high-resolution prediction and design of transmembrane helical protein structures P. Barth, J. Schonbrun and D. Baker PNAS Sep 28 2007 Tim Nugent – BUGF -…

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Slide 1 Peptoids Physics 43 Santa Rosa Junior College Spring Semester 2011 Researchers: Daniel Janiak By request: a photo of me (at the nanotech forum) Slide 2 Ronald Zuckermann,…

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Slide 1 Comparing Data from MD simulations and X-ray Crystallography What can we compare? 3D shapes (RMSD) Atomic motions (B-value, RMSF) Solvent accessibilities (SASA) Slide…

Slide 1 Collaborators : In silico study of amyloid - protein folding and oligomer formation Brigita Urbanc Boston University Center for Polymer Studies H. Eugene Stanley,…

Slide 1 Levels of Protein Structure 16.5 Slide 2 Peptide/Protein Formation Peptide: small, up to 50 AA Proteins: large, several 100 AA and/or multiple peptide chains grouped…

Collaborators: In silico study of amyloid -protein folding and oligomer formation Brigita Urbanc Boston University Center for Polymer Studies H. Eugene Stanley, Director…

2. Introduction to Rosetta and structural modeling Approaches for structural modeling of proteins The Rosetta framework and its prediction modes Cartesian and polar coordinates…

Introduction to Proteins What do proteins do? Structural proteins Function: Support Example: Collagen and elastin provide a fibrous framework in animal connective tissues…