Slide 1 Computer Science and Reconstructing Evolutionary Trees Tandy Warnow Department of Computer Science University of Illinois at Urbana-Champaign Slide 2 Slide 3 BigData…
Slide 1 http://creativecommons.org/licenses/by-sa/2.0/ Slide 2 CIS786, Lecture 3 Usman Roshan Slide 3 Maximum Parsimony Character based method NP-hard (reduction to the Steiner…
Slide 1 BNFO 602 Phylogenetics Usman Roshan Slide 2 Summary of last time Models of evolution Distance based tree reconstruction –Neighbor joining –UPGMA Slide 3 Why phylogenetics?…
Slide 1 Phylogeny Estimation: Why It Is "Hard", and How to Design Methods with Good Performance Tandy Warnow Department of Computer Sciences University of Texas…
Maximum Parsimony Input: Set S of n aligned sequences of length k Output: A phylogenetic tree T leaf-labeled by sequences in S additional sequences of length k labeling the…
CS 394C: Computational Biology Algorithms Tandy Warnow Department of Computer Sciences University of Texas at Austin DNA Sequence Evolution Molecular Systematics TAGCCCA…
Computational problems in evolutionary tree reconstruction Phylogeny Estimation: Why It Is "Hard", and How to Design Methods with Good Performance Tandy Warnow…
394C: Algorithms for Computational Biology Tandy Warnow Sept 9, 2013 Hill-climbing heuristics for hard optimization criteria (Maximum Parsimony and Maximum Likelihood) Phylogenetic…
BNFO 602 Phylogenetics Usman Roshan Summary of last time Models of evolution Distance based tree reconstruction Neighbor joining UPGMA Why phylogenetics? Study of evolution…
Algorithms for Inferring the Tree of Life Tandy Warnow Dept. of Computer Science The University of Texas at Austin Phylogeny Orangutan Gorilla Chimpanzee Human From the Tree…