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Documents Computer Science and Reconstructing Evolutionary Trees Tandy Warnow Department of Computer Science.....

Slide 1 Computer Science and Reconstructing Evolutionary Trees Tandy Warnow Department of Computer Science University of Illinois at Urbana-Champaign Slide 2 Slide 3 BigData…

Documents Http://creativecommons.org/licenses/by-sa/2.0/. CIS786, Lecture 3 Usman Roshan.

Slide 1 http://creativecommons.org/licenses/by-sa/2.0/ Slide 2 CIS786, Lecture 3 Usman Roshan Slide 3 Maximum Parsimony Character based method NP-hard (reduction to the Steiner…

Documents BNFO 602 Phylogenetics Usman Roshan. Summary of last time Models of evolution Distance based tree...

Slide 1 BNFO 602 Phylogenetics Usman Roshan Slide 2 Summary of last time Models of evolution Distance based tree reconstruction –Neighbor joining –UPGMA Slide 3 Why phylogenetics?…

Documents Phylogeny Estimation: Why It Is "Hard", and How to Design Methods with Good Performance Tandy Warnow...

Slide 1 Phylogeny Estimation: Why It Is "Hard", and How to Design Methods with Good Performance Tandy Warnow Department of Computer Sciences University of Texas…

Documents Maximum Parsimony Input: Set S of n aligned sequences of length k Output: –A phylogenetic tree T.....

Maximum Parsimony Input: Set S of n aligned sequences of length k Output: A phylogenetic tree T leaf-labeled by sequences in S additional sequences of length k labeling the…

Documents CS 394C: Computational Biology Algorithms

CS 394C: Computational Biology Algorithms Tandy Warnow Department of Computer Sciences University of Texas at Austin DNA Sequence Evolution Molecular Systematics TAGCCCA…

Documents Phylogeny Estimation: Why It Is "Hard", and How to Design Methods with Good Performance

Computational problems in evolutionary tree reconstruction Phylogeny Estimation: Why It Is "Hard", and How to Design Methods with Good Performance Tandy Warnow…

Documents 394C: Algorithms for Computational Biology

394C: Algorithms for Computational Biology Tandy Warnow Sept 9, 2013 Hill-climbing heuristics for hard optimization criteria (Maximum Parsimony and Maximum Likelihood) Phylogenetic…

Documents BNFO 602 Phylogenetics

BNFO 602 Phylogenetics Usman Roshan Summary of last time Models of evolution Distance based tree reconstruction Neighbor joining UPGMA Why phylogenetics? Study of evolution…

Documents Algorithms for Inferring the Tree of Life

Algorithms for Inferring the Tree of Life Tandy Warnow Dept. of Computer Science The University of Texas at Austin Phylogeny Orangutan Gorilla Chimpanzee Human From the Tree…