Thermal Conductivity of Polymer Materials Reverse Nonequilibrium Molecular Dynamics Simulation I. Table of Contents i I. Table of Contents II. Table of Pictures ii II. Table…

Slide 1 Rosetta Energy Function Glenn Butterfoss Slide 2 Rosetta Energy Function Major Classes: 1. Low resolution: Reduced atom representation Simple energy function Aggressively…

Slide 1 Analysis of the Quality of NMR Protein Structures With A Structure Calculated From Your NMR Data, How Do You Determine the Accuracy and Quality of the Structure?…

Slide 1 Biochemistry 301 Principles of Protein Structure Walter Chazin 5140 BIOSCI/MRBIII E-mail: Walter.Chazin http://structbio.vanderbilt.edu/chazin Jan. 8-10, 2003 Slide…

Slide 1 FSSP uses DALI alignments to classify structures all PDB entries representative set of structures representative set of domains group domains into fold types (clusters…

Slide 1 PcaA Mycolic acid cyclopropyl synthase (Smith&Sacchettini) original structure solved at 2.0A via MAD R-value = 0.22, R-free = 0.27 287 residues,  fold…

Motifs of Protein Structures Branden & Tooze, Chapter 2 Central Dogma of Molecular Biology DNA RNA protein Transcription Translation in ribosome Protein Sequence to Structure…

PREDICTING PROTEIN SECONDARY STRUCTURE USING ARTIFICIAL NEURAL NETWORKS Sudhakar Reddy Patrick Shih Chrissy Oriol Lydia Shih Sudhakar Reddy Proteins And Secondary Structure…

Rosetta Steven Bitner Objectives Introduction How Rosetta works How to get it How to install/use it Introduction Developed in the David Baker lab at University of Washington…

PREDICTING PROTEIN SECONDARY STRUCTURE USING ARTIFICIAL NEURAL NETWORKS Sudhakar Reddy Patrick Shih Chrissy Oriol Lydia Shih Sudhakar Reddy Proteins And Secondary Structure…