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Virtual Biodiversity ViBRANT Workshop 5: Bibliographies in a changing landscape David Morse, The Open University, UK, [email protected] David King, The Open University, UK, [email protected] BIH2013 workshop, Sapienza University, 6 September 2013 ViBRANT Virtual Biodiversity
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Virtual Biodiversity ViBRANT Workshop 5: Bibliographies in a changing landscape David Morse, The Open University, UK, [email protected]@open.ac.uk.

Dec 16, 2015

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Page 1: Virtual Biodiversity ViBRANT Workshop 5: Bibliographies in a changing landscape David Morse, The Open University, UK, David.Morse@open.ac.ukDavid.Morse@open.ac.uk.

Virtual BiodiversityViBRANT

Workshop 5:Bibliographies in

a changing landscapeDavid Morse, The Open University, UK, [email protected] King, The Open University, UK, [email protected]

BIH2013 workshop, Sapienza University, 6 September 2013

ViBRANTVirtual Biodiversity

Page 2: Virtual Biodiversity ViBRANT Workshop 5: Bibliographies in a changing landscape David Morse, The Open University, UK, David.Morse@open.ac.ukDavid.Morse@open.ac.uk.

Virtual BiodiversityViBRANT

Agenda

• The wider landscape• The bibliography of lifeIntroduction

• RefBank• ReFinder

ViBRANT tools

• Linked open dataThe future

Page 3: Virtual Biodiversity ViBRANT Workshop 5: Bibliographies in a changing landscape David Morse, The Open University, UK, David.Morse@open.ac.ukDavid.Morse@open.ac.uk.

Virtual BiodiversityViBRANT

Agenda

• The wider landscape• The bibliography of lifeIntroduction

• RefBank• ReFinder

ViBRANT tools

• Linked open dataThe future

Page 4: Virtual Biodiversity ViBRANT Workshop 5: Bibliographies in a changing landscape David Morse, The Open University, UK, David.Morse@open.ac.ukDavid.Morse@open.ac.uk.

Virtual BiodiversityViBRANT

Citing to survive

Standingon the

shouldersof giants

As good academics we will cite the

source…

Page 5: Virtual Biodiversity ViBRANT Workshop 5: Bibliographies in a changing landscape David Morse, The Open University, UK, David.Morse@open.ac.ukDavid.Morse@open.ac.uk.

Virtual BiodiversityViBRANT

5 of

Citing to survive

14

Linnaeus, C. 1758: Systema Naturae per regna tria naturæ, secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis, Tomus I. Editio decima, reformata. Holmiæ: impensis direct. Laurentii Salvii. i–ii, pp 1–824 doi: 10.5962/bhl.title.542: pages 106–107.

Pica pica (Linnaeus, 1758)

Page 6: Virtual Biodiversity ViBRANT Workshop 5: Bibliographies in a changing landscape David Morse, The Open University, UK, David.Morse@open.ac.ukDavid.Morse@open.ac.uk.

Virtual BiodiversityViBRANT

Citing to survive

You have to be accurate:

Kimura, M. (1980) A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences.J. Mol. Evol., 16, 111–120

Kimura, M. (1980) A simple model for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences.J. Mol. Evol., 16, 111–120

Page 7: Virtual Biodiversity ViBRANT Workshop 5: Bibliographies in a changing landscape David Morse, The Open University, UK, David.Morse@open.ac.ukDavid.Morse@open.ac.uk.

Virtual BiodiversityViBRANT

Citing to survive

Enough of the problems…

What of the solutions?

Page 8: Virtual Biodiversity ViBRANT Workshop 5: Bibliographies in a changing landscape David Morse, The Open University, UK, David.Morse@open.ac.ukDavid.Morse@open.ac.uk.

Virtual BiodiversityViBRANT

A little history

Page 9: Virtual Biodiversity ViBRANT Workshop 5: Bibliographies in a changing landscape David Morse, The Open University, UK, David.Morse@open.ac.ukDavid.Morse@open.ac.uk.

Virtual BiodiversityViBRANT

A little history

AALBERSE, R. C., VAN LEEUWEN, J., WITTEMAN, A. & AKKERDAAS, J. H. 1993. IgE antibodies to insects in mite-positive sera: co-sensitization or crossreactivity. Forty-ninth Annual Meeting of the American Academy of Allergy and Immunology, Chicago, Illinois, USA, March 12-17, 1993. Journal of Allergy and Clinical Immunology 91: 284.AARON, S. F. 1883. Description of new Psocidae in the collection of the American Entomological Society. Transactions of the American Entomological Society 11(1884): 37-40, pl. IX. (This paper was published in December 1883).AARON, S. F. 1884. Collecting on the Gulf Coast of Southern Texas. Papilio 4(9-10): 159-161.AARON, S. F. 1886. On some new Psocidae. Proceedings of the Academy of Natural Sciences …

Page 10: Virtual Biodiversity ViBRANT Workshop 5: Bibliographies in a changing landscape David Morse, The Open University, UK, David.Morse@open.ac.ukDavid.Morse@open.ac.uk.

Virtual BiodiversityViBRANT

A little history

@article {234,title = {Descriptions of three new species of Psychodidae (Diptera) from the southeastern United States},journal = {Zootaxa},volume = {2524},year = {2010},pages = {51-62},author = {Curler, Gregory R. and John K. Moulton}

}

Page 11: Virtual Biodiversity ViBRANT Workshop 5: Bibliographies in a changing landscape David Morse, The Open University, UK, David.Morse@open.ac.ukDavid.Morse@open.ac.uk.

Virtual BiodiversityViBRANT

A little history

Page 12: Virtual Biodiversity ViBRANT Workshop 5: Bibliographies in a changing landscape David Morse, The Open University, UK, David.Morse@open.ac.ukDavid.Morse@open.ac.uk.

Virtual BiodiversityViBRANT

A little history

Page 13: Virtual Biodiversity ViBRANT Workshop 5: Bibliographies in a changing landscape David Morse, The Open University, UK, David.Morse@open.ac.ukDavid.Morse@open.ac.uk.

Virtual BiodiversityViBRANT

A little history

Page 14: Virtual Biodiversity ViBRANT Workshop 5: Bibliographies in a changing landscape David Morse, The Open University, UK, David.Morse@open.ac.ukDavid.Morse@open.ac.uk.

Virtual BiodiversityViBRANT

A little history

Page 15: Virtual Biodiversity ViBRANT Workshop 5: Bibliographies in a changing landscape David Morse, The Open University, UK, David.Morse@open.ac.ukDavid.Morse@open.ac.uk.

Virtual BiodiversityViBRANT

A little history

Page 16: Virtual Biodiversity ViBRANT Workshop 5: Bibliographies in a changing landscape David Morse, The Open University, UK, David.Morse@open.ac.ukDavid.Morse@open.ac.uk.

Virtual BiodiversityViBRANT

A little history

Page 17: Virtual Biodiversity ViBRANT Workshop 5: Bibliographies in a changing landscape David Morse, The Open University, UK, David.Morse@open.ac.ukDavid.Morse@open.ac.uk.

Virtual BiodiversityViBRANT

A little history

Page 18: Virtual Biodiversity ViBRANT Workshop 5: Bibliographies in a changing landscape David Morse, The Open University, UK, David.Morse@open.ac.ukDavid.Morse@open.ac.uk.

Virtual BiodiversityViBRANT

A little history

Page 19: Virtual Biodiversity ViBRANT Workshop 5: Bibliographies in a changing landscape David Morse, The Open University, UK, David.Morse@open.ac.ukDavid.Morse@open.ac.uk.

Virtual BiodiversityViBRANT

Meanwhile in biodiversity

Page 20: Virtual Biodiversity ViBRANT Workshop 5: Bibliographies in a changing landscape David Morse, The Open University, UK, David.Morse@open.ac.ukDavid.Morse@open.ac.uk.

Virtual BiodiversityViBRANT

Agenda

• The wider landscape• The bibliography of lifeIntroduction

• RefBank• ReFinder

ViBRANT tools

• Linked open dataThe future