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vcf intro copy - evomicsorg.wpengine.netdna-cdn.com

Apr 02, 2022

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Page 1: vcf intro copy - evomicsorg.wpengine.netdna-cdn.com

FileFormats.VCFtools.PLINK

Page 2: vcf intro copy - evomicsorg.wpengine.netdna-cdn.com

mapping to

reference

variant calling filteringRAW

readsmore

filtering

FASTQ

filtering &

analyses

SAM/BAM VCF/BCF VCF/BCF various

more analyses

VCF/BCF PED/BED

Pipeline

File format

Page 3: vcf intro copy - evomicsorg.wpengine.netdna-cdn.com

tomorrow

mapping to

reference

variant calling filteringRAW

readsmore

filtering

FASTQ

filtering &

analyses

SAM/BAM VCF/BCF VCF/BCF various

more analyses

VCF/BCF PED/BED

Pipeline

File format

tonight

now!

Page 4: vcf intro copy - evomicsorg.wpengine.netdna-cdn.com
Page 5: vcf intro copy - evomicsorg.wpengine.netdna-cdn.com
Page 6: vcf intro copy - evomicsorg.wpengine.netdna-cdn.com
Page 7: vcf intro copy - evomicsorg.wpengine.netdna-cdn.com
Page 8: vcf intro copy - evomicsorg.wpengine.netdna-cdn.com

http://evomics.org/learning/population-and-speciation-genomics/fileformats-vcftools-plink/