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UvA-DARE is a service provided by the library of the University of Amsterdam (http://dare.uva.nl) UvA-DARE (Digital Academic Repository) Scientific Information Management in Collaborative Experimentation Environments Kaletas, E.C. Link to publication Citation for published version (APA): Kaletas, E. C. (2004). Scientific Information Management in Collaborative Experimentation Environments. General rights It is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), other than for strictly personal, individual use, unless the work is under an open content license (like Creative Commons). Disclaimer/Complaints regulations If you believe that digital publication of certain material infringes any of your rights or (privacy) interests, please let the Library know, stating your reasons. In case of a legitimate complaint, the Library will make the material inaccessible and/or remove it from the website. Please Ask the Library: https://uba.uva.nl/en/contact, or a letter to: Library of the University of Amsterdam, Secretariat, Singel 425, 1012 WP Amsterdam, The Netherlands. You will be contacted as soon as possible. Download date: 07 Jun 2020
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Page 1: UvA-DARE (Digital Academic Repository) Scientific ... · Matthews,, and K. D. O'Neill. A multidisicplinary scientific data portal. In Proceedings ofof the 9th International Conference

UvA-DARE is a service provided by the library of the University of Amsterdam (httpdareuvanl)

UvA-DARE (Digital Academic Repository)

Scientific Information Management in Collaborative Experimentation Environments

Kaletas EC

Link to publication

Citation for published version (APA)Kaletas E C (2004) Scientific Information Management in Collaborative Experimentation Environments

General rightsIt is not permitted to download or to forwarddistribute the text or part of it without the consent of the author(s) andor copyright holder(s)other than for strictly personal individual use unless the work is under an open content license (like Creative Commons)

DisclaimerComplaints regulationsIf you believe that digital publication of certain material infringes any of your rights or (privacy) interests please let the Library know statingyour reasons In case of a legitimate complaint the Library will make the material inaccessible andor remove it from the website Please Askthe Library httpsubauvanlencontact or a letter to Library of the University of Amsterdam Secretariat Singel 425 1012 WP AmsterdamThe Netherlands You will be contacted as soon as possible

Download date 07 Jun 2020

Bibliography y 251 1

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[64]] W E Johnston and S Sachs Distributed collaboratory experiment environments pro-gram Overview and final report Technical Report LBNL-39992 Lawrence Berkeley Nationall Laboratory 1997

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[69]] H Afsarmanesh A Benabdelkader E C Kaletas C Garita and L O Hertzberger Towardss a multi-layer architecture for scientific virtual laboratories In Proceedings of thethe 8th International Conference and Exhibition on High-Performance Computing and NetworkingNetworking (HPCN Europe 2000) pages 163-176 2000

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[84]] A Sheth and J Larson Federated database systems for managing distributed hetero-geneous and autonomous databases ACM Computing Surveys 22(3) 183-236 1990

[85]] C Garita H Afsarmanesh and L O Hertzberger The prodnet federated information managementt approach for virtual enterprise support Journal of Intelligent Manufac-turingturing 12151-170 2001

[86]] O A Bukhres and A Elmagarmid editors Object-Oriented Multidatabase Systems -AA Solution for Advanced Applications Prentice Hall 1996

[87]] A Elmagarmid M Rusinkiewicz and A Sheth editors Management of Heterogeneous andand Autonomous Database Systems Morgan Kaufmann 1999

[88]] C Garita H Afsarmanesh and L O Hertzberger A survey of distributed information managementt approaches for virtual enterprise infrastructures In U J Franke editor ManagingManaging Virtual Web Organizations in the 21st Century Issues and Challenges chapterr 5 Idea Group Publishing 2002

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[91]] A Benabdelkader Information Integration Among Heterogeneous and Autonomous ApplicationsApplications Phd thesis University of Amsterdam Faculty of Science 2002

[92]] V Kashyap and A Sheth Information Brokering Accross Heterogeneous Digital Data -- A Metadata-Based Approach Kluwer Academic Publishers 2000

[93]] H Afsarmanesh M Wiedijk LO Hertzberger FJ Negreiros Gomes A Provedel RC Martins and EOT Salles Cooperation of cim expert systems supported by peer Journal of Studies in Informatics and Control 5(2) 157-169 1996

[94]] J C Lavariega and S D Urban Donaji A semantic architecture for multidatabase systems In Proceedings of the Workshop in Intelligent Information Integration pages 39-54 1998

[95]] L M Haas P M Schwarz P Kodali E Kotlar J E Rice and W C Swope Dis-coverylink A system for integrated access to life sciences data sources IBM Systems JournalJournal 40(2)489-511 2001

[96]] V Josifovski P M Schwarz L M Haas and E Lin Garlic a new flavor of federated queryy processing for db2 In Proceedings of the ACM SIGMOD Conference pages 524-532 2002

[97]] Virtuoso universal server - web page httpwwwopenlinkswcomvirtuosoindex htm 2003

[98]] J Smith A Gounaris P Watson N W Paton A A A Fernandes and R Sakellar-iou Distributed query processing on the grid In Proceedings of the Third Workshop onon Grid Computing (GRID 2002) pages 279-290 2002

[99]] I Foster C Kesselman and S Tuecke The anatomy of the grid Enabling scalable virtuall organizations International Journal of Supercomputer Applications 15(3) 200-222 2001

[100]] Global grid forum - web page httpwwwglobalgridforumorg 2003

[101]] I Foster C Kesselman J Nick and S Tuecke The physiology of the grid An open gridd services architecture for distributed systems integration Technical report Global Gridd Forum - Open Grid Service Infrastructure Working Group 2002

[102]] Web services description language (wsdl) version 12 - web page httpwwww3org TR2002WD-wsdll2-20020709 2003

258 8 Bibliography y

[103]] D Angulo R Aydt F Berman A Chien K Cooper H Dail J Dongarra I Foster D Gannon L Johnsson K Kennedy Kesselman C M Mazina J Mellor-Crummey D Reed O Sievert L Torczon S Vadhiyar and R Wolski Toward a framework for preparingg and executing adaptive grid programs In Proceedings of the 16th Interna-tionaltional Parallel and Distributed Processing Symposium (IPDPS 2002) 2002

[104]] D Angulo I Foster C Liu and L Yang Design and evaluation of a resource selection frameworkk for grid applications In Proceedings of IEEE International Symposium on HighHigh Performance Distributed Computing (HPDC-11) pages 63-72 2002

[105]] A Iamnitchi and I Foster On fully decentralized resource discovery in grid environ-ments In Proceedings of International Workshop on Grid Computing pages 51-62 2001

[106]] I Foster C Kesselman G Tsudik and S Tuecke A security architecture for compu-tationall grids In Proceedings of the 5th ACM Conference on Computer and Commu-nicationsnications Security Conference pages 83-92 1998

[107]] K Keahey and V Welch Fine-grain authorization for resource management in the gridd environment In Proceedings of Grid2002 Workshop 2002

[108]] Global grid forum database access and integration services working group - web page httpwwwgridforumorg6_DATAdaishtm 2003

[109]] Uk e-science programme database task force - web page http wwwcsmanacuk gr id-dbdbtff html 2003

[110]] A Chervenak I Foster C Kesselman C Salisbury and Steven Tuecke The data grid Towards an architecture for the distributed management and analysis of large scientificc data sets Journal of Network and Computer Applications 23(3) 187-200 2000

[ I l l ]] European datagrid - web page http wwwedgorg 2003

[112]] Open grid services architecture database access and integration project - web page ht tp wwwogsadaiorguk 2003

[113]] Project spitfire - web page h t t p edg-wp2 web cern chedg-wp2spitf i r e 2003

[114]] W H Bell D Bosio W Hoschek P Kunszt G McCance and M Silander Project spitfitee - towards grid web service Informational document Global Grid Forum -Databasee Access and Integration Services Working Group 2002

[115]] B Allcock J Bester J Bresnahan A L Chervenak I Foster C Kesselman S Meder V Nefedova D Quesnel and Steven Tuecke Data management and transfer inn high-performance computational grid environments Parallel Computing Journal 28(5)749-771 2002

[116]] A W van Halderen B J Overeinder P M A Sloot R van Dantzig D H J Epema and M Livny Hierarchical resource management in the polder metacomputing initiative Parallel Computing 24(12-13)1807-1825 1998

[117]] The polder computing environment - web page h t tp wwwsc ienceuvan l researchscsSCS4html 2004

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[118]] K Iskra R G Belleman G D van Albada J Santoso P M A Sloot H E Bal H J W Spoelder and M Bubak The polder computing environment A system forr interactive distributed simulation Concurrency and Computation Practice and ExperienceExperience 14(13-15) 1313-1335 2002

[119]] A H Buss and L Jackson Distributed simulation modeling A comparison of hla corba and rmi In Proceedings of the Winter Simulation Conference pages 819-826 1998

[120]] High level architecture - web page h t t p s www dmsomi l pub l i c t rans i t ion h la 2004

[121]] High level architecture federation development and execution process (fedep) model versionn 15 Technical report Department of Defense Defense Modeling and Simula-tionn Office 1999

[122]] K Zayac A Tirado-Ramos Z Zhao P Sloot and M Bubak Grid services for hla-basedd distributed simulation frameworks In Proceedings of the First European Across GridsGrids Conference 2003

[123]] Root an object-oriented data analysis framework - web page h t t p r o o t c e r n c h 2004

[124]] P Koksal I Cingil and A Dogac A component-based workflow system with dy-namicc modifications In Proceedings of Next Generation Information Technologies and SystemsSystems (NGITS99) pages 238-255 1999

[125]] The workflow management coalition - web page httpwwwwfmcorg 2003

[126]] D Hollingsworth The workflow reference model Technical Report TC00-1003 The Workfloww Management Coalition 1994

[127]] J A Miller D Palaniswami A P Sheth K J Kochut and H Singh Webwork Meteor2ss web-based workflow management system Journal of Intelligent Information SystemsSystems 10(2) 185-215 1998

[128]] A Sheth D Worah K Kochut J Miller K Zheng D Palaniswami and S Das Thee meteor workflow management system and its use in prototyping healthcare ap-plications In Proceedings of the Towards An Electronic Patient Record (TEPR 97) ConferenceConference pages 267-278 1997

[129]] Wide Workflow on intelligent distributed database environment project - web page h t t p d i s sema esprojectsWIDE 2003

[130]] The wide project Final report Project Final Report 4111-2 ESPRIT Project 20280 1999

[131]] L Baresi F Casati S Castano S Ceri M G Fugini I Mirbel B Pernici G Pozzi andd P Grefen Wide workflow development methodology Project Deliverable 3027-6 ESPRITT Project 20280 1999

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[132]] L M Camarinha-Matos and H Afsarmanesh The virtual enterprise concept In L M Camarinha-Matos and H Afsarmanesh editors Infrastructures for Virtual En-terprisesterprises - Networking Industrial Enterprises chapter 1 pages 3-14 Kluwer Academic Publishers 1999

[133]] L M Camarinha-Matos and H Afsarmanesh editors Infrastructures for Virtual EnterprisesEnterprises - Networking Industrial Enterprises Kluwer Academic Publishers 1999

[134]] C Garita Federated Information Management for Virtual Enterprises Phd thesis Universityy of Amsterdam Faculty of Science 2001

[135]] G von Laszewski I Foster J Gawor P Lane N Rehn and M Russell Design-ingg grid-based problem solving environments and portals In Proceedings of the 34th AnnualAnnual Hawaii International Conference on System Sciences (HICSS-34) - Volume 9 2001

[136]] Y E Ioannidis M Livny S Gupta and N Ponnekanti Zoo A desktop experiment managementt environment In Proceedings of the 22nd International Conference on VeryVery Large Data Bases (VLDB 1996) pages 274-285 1996

[137]] Y E Ioannidis and M Livny Conceptual schemas Multi-faceted tools for desktop scientificc experiment management International Journal of Intelligent and Cooperative InformationInformation Systems l(3)451-474 1992

[138]] Pdelab - web page httpwwwwebpdelaborg 2003

[139]] I A Chen and V M Markowitz Modeling scientific experiments with an object dataa model In Proceedings of the 11th International Conference on Data Engineering (ICDE(ICDE 1995) 1995

[140]] I A Chen and V M Markowitz An overview of the object protocol model (opm) andd the opm data management tools Information Systems 20(5) 1995

[141]] Gateway portal - web page http wwwgatewayportal org 2003

[142]] G Fox T Haupt E Akarsu A Kalinichenko K-S Kim P Sheethalnath and C-H Youn The gateway system Uniform web based access to remote resources In ProceedingsProceedings of The ACM Conference on Java Grande pages 1-7 1999

[143]] M Romberg The unicore architecture seamless access to distributed resources In Pro-ceedingsceedings of the 8th IEEE International Symposium on High Performance Distributed ComputingComputing (HPDC-99) 1999

[144]] The cactus code server - web page ht tp wwwcactuscodeorg 2003

[145]] K Schuchardt B Didier and G Black Ecce - a problem solving environments evolutionn toward grid services and a web architecture Concurrency and Computation PracticePractice and Experience 14(13-15)1221-1239 2002

[146]] The virtual laboratory project - web page ht tp wwwgr idbusorgv lab 2003

[147]] V R Watson Supporting scientific analysis within collaborative problem solving environments In Proceedings of the 34th Annual Hawaii International Conference on SystemSystem Sciences (HICSS-34) - Volume 9 2001

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[148]] Fast Flow analysis software toolkit - web page Electronically available at h t t p wwwnasnasagovSoftwareFAST 2003

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[150]] Virtual lab - web page h t tp p r t f e rnun i -hagen de v i r t l ab i n fo_e h tm l 2003

[151]] M Budhu Virtual laboratories for engineering education In Proceedings of the Inter-nationalnational Conference on Engineering Education 2002

[152]] C Schmid Virtual control laboratories and remote experimentation in control engi-neering In Proceedings of the 11th EAEEIE Annual Conference on Innovations in EducationEducation for Electrical and Information Engineering pages 213-218 2000

[153]] The tele-actor - web page h t t p t e l eac to r be rke ley edu 2003

[154]] Virtual control lab - web page httpwwwesrruhr-uni-bochumdeVCLab 2003

[155]] San diego supercomputer center data intensive computing Storage resource broker -webb page httpwwwsdsceduDICESRBindexhtml 2003

[156]] C Baru R Moore A Rajasekar and M Wan The sdsc storage resource broker In ProceedingsProceedings of the CASCON98 Conference 1998

[157]] A K Rajasekar M Wan and R W Moore Mysrb amp srb - components of a data grid In Proceedings of the 11th IEEE International Symposium on High Performance DistributedDistributed Computing (HPDC-11) 2002

[158]] K Bell A Chien and M Lauria A high-performance cluster storage server In Pro-ceedingsceedings of the 11th IEEE International Symposium on High Performance Distributed ComputingComputing (HPDC-11) 2002

[159]] Griphyn Grid physics network - web page ht tp wwwgriphynorg 2003

[160]] I Foster J Voumlckler M Wilde and Y Zhao Chimera A virtual data system for rep-resenting querying and automating data derivation In Proceedings of the 14th Inter-nationalnational Conference on Scientific and Statistical Database Management (SSDBM02) 2002

[161]] A Chervenak E Deelman C Kesselman L Pearlman and G Singh A metadata catalogg service for data intensive applications Technical Report GriPhyN 2002-11 GriPhyN 2002

[162]] A Choudhary M Kandemir H Nagesh J No X Shen V Taylor S More and R Thakur Data management for large scientific computations in high performance distributedd systems In Proceedings of the 8th IEEE International Symposium on High PerformancePerformance Distributed Computing (HPDC-99) 1999

[163]] E C Kaletas H Afsarmanesh and L O Hertzberger Modelling multi-disciplinary scientificc experiments and information In Proceedings of the Eighteenth International SymposiumSymposium on Computer and Information Sciences (ISCIS03) pages 75-82 2003

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[164]] E C Kaletas H Afsarmanesh and L O Hertzberger Virtual laboratory experimen-tationn environment data model Technical Report CS-2001-01 University of Amster-dam Informatics Institute 2001

[165]] E C Kaletas H Afsarmanesh and L O Hertzberger A methodology for integrat-ingg new scientific domains and applications in a virtual laboratory environment In ProceedingsProceedings of the 6th International Conference on Enterprise Information Systems (ICEIS(ICEIS 2004) (to appear) 2004

[166]] Jsx-java serialization to xml - web page ht tp wwwobject l ight com 2003

[167]] Electric xml - web page httpwwwthemindelectriccomexii i l indexhtml 2003

[168]] Matisse dbms - web page httpwwwmatissecom 2003

[169]] Miame minimum information about a microarray experiment - web page h t t p wwwmgedorgmiame 2003

[170]] A Brazma P Hingamp J Quackenbush G Sherlock P Spellman C Stoeck-ert J Aach W Ansorge C A Ball H C Causton T Gasterland P Glenisson F C P Holstege I F Kim V Markowitz J C Matese H Parkinson A Robin-son U Sarkans S Schulze-Kremer J Stewart R Taylor J Vilo and M Vingron Minimumm information about a microarray experiment (miame) - towards standards forr microarray data Nature Genetics 29365-371 2001

[171]] E C Kaletas H Afsarmanesh and L O Hertzberger A collaborative experimen-tationn environment for biosciences International Journal of Networking and Virtual OrganizationsOrganizations (to appear) 2004

[172]] L M Camarinha-Matos H Afsarmanesh E C Kaletas and T Cardoso Service federationn in virtual organizations In Proceedings of The Eleventh International IFIP TC5TC5 WG-52-WG-53 Conference (PROL AM AT 2001) pages 305-324 2001

[173]] C Garita E C Kaletas H Afsarmanesh and L O Hertzberger A service inter-facee definitions catalogue for virtual enterprises in tourism In Proceedings of the 5th5th IFIP International Conference on Information Technology for BALANCED AU-TOMATIONTOMATION SYSTEMS In Manufacturing and Services (BASYS 2002) pages 97-108 2002

[174]] A Belloum E C Kaletas and L O Hertzberger The jera final report Technical Reportt JERA-TN13 University of Amsterdam Informatics Institute 1999

[175]] A S Z Belloum E C Kaletas A W van Halderen H Afsarmanesh L OHertzberger and A J H Peddemors A scalable web server architecture World WideWide Web Journal 5(l)5-23 2002

[176]] A J H Peddemors and L O Hertzberger A high performance distributed database systemm for enhanced internet services In Proceedings of the 6th International Confer-enceence and Exhibition on High-Performance Computing and Networking (HPCN Europe 1998)1998) pages 469-478 1998

[177]] A Benabdelkader H Afsarmanesh E C Kaletas and L O Hertzberger Managing largee scientific multi-media data sets In Proceedings of the Workshop on Advanced DataData StorageManagement Techniques for High Performance Computing 2000

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[179]] E C Kaletas A W van Halderen F van der Linden H Afsarmanesh and L O Hertzberger Evaluation of rcube-based switch using a real world application In ProceedingsProceedings of the 8th International Conference and Exhibition on High-Performance ComputingComputing and Networking (HPCN Europe 2000) pages 507-516 2000

[180]] A W van Halderen F van der Linden E C Kaletas and L O Hertzberger Ge applicationn and mpi benchmarking report Technical Report ARCHES II Deliverables 33222 and 3342 University of Amsterdam Informatics Institute 1999

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[91]] A Benabdelkader Information Integration Among Heterogeneous and Autonomous ApplicationsApplications Phd thesis University of Amsterdam Faculty of Science 2002

[92]] V Kashyap and A Sheth Information Brokering Accross Heterogeneous Digital Data -- A Metadata-Based Approach Kluwer Academic Publishers 2000

[93]] H Afsarmanesh M Wiedijk LO Hertzberger FJ Negreiros Gomes A Provedel RC Martins and EOT Salles Cooperation of cim expert systems supported by peer Journal of Studies in Informatics and Control 5(2) 157-169 1996

[94]] J C Lavariega and S D Urban Donaji A semantic architecture for multidatabase systems In Proceedings of the Workshop in Intelligent Information Integration pages 39-54 1998

[95]] L M Haas P M Schwarz P Kodali E Kotlar J E Rice and W C Swope Dis-coverylink A system for integrated access to life sciences data sources IBM Systems JournalJournal 40(2)489-511 2001

[96]] V Josifovski P M Schwarz L M Haas and E Lin Garlic a new flavor of federated queryy processing for db2 In Proceedings of the ACM SIGMOD Conference pages 524-532 2002

[97]] Virtuoso universal server - web page httpwwwopenlinkswcomvirtuosoindex htm 2003

[98]] J Smith A Gounaris P Watson N W Paton A A A Fernandes and R Sakellar-iou Distributed query processing on the grid In Proceedings of the Third Workshop onon Grid Computing (GRID 2002) pages 279-290 2002

[99]] I Foster C Kesselman and S Tuecke The anatomy of the grid Enabling scalable virtuall organizations International Journal of Supercomputer Applications 15(3) 200-222 2001

[100]] Global grid forum - web page httpwwwglobalgridforumorg 2003

[101]] I Foster C Kesselman J Nick and S Tuecke The physiology of the grid An open gridd services architecture for distributed systems integration Technical report Global Gridd Forum - Open Grid Service Infrastructure Working Group 2002

[102]] Web services description language (wsdl) version 12 - web page httpwwww3org TR2002WD-wsdll2-20020709 2003

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[103]] D Angulo R Aydt F Berman A Chien K Cooper H Dail J Dongarra I Foster D Gannon L Johnsson K Kennedy Kesselman C M Mazina J Mellor-Crummey D Reed O Sievert L Torczon S Vadhiyar and R Wolski Toward a framework for preparingg and executing adaptive grid programs In Proceedings of the 16th Interna-tionaltional Parallel and Distributed Processing Symposium (IPDPS 2002) 2002

[104]] D Angulo I Foster C Liu and L Yang Design and evaluation of a resource selection frameworkk for grid applications In Proceedings of IEEE International Symposium on HighHigh Performance Distributed Computing (HPDC-11) pages 63-72 2002

[105]] A Iamnitchi and I Foster On fully decentralized resource discovery in grid environ-ments In Proceedings of International Workshop on Grid Computing pages 51-62 2001

[106]] I Foster C Kesselman G Tsudik and S Tuecke A security architecture for compu-tationall grids In Proceedings of the 5th ACM Conference on Computer and Commu-nicationsnications Security Conference pages 83-92 1998

[107]] K Keahey and V Welch Fine-grain authorization for resource management in the gridd environment In Proceedings of Grid2002 Workshop 2002

[108]] Global grid forum database access and integration services working group - web page httpwwwgridforumorg6_DATAdaishtm 2003

[109]] Uk e-science programme database task force - web page http wwwcsmanacuk gr id-dbdbtff html 2003

[110]] A Chervenak I Foster C Kesselman C Salisbury and Steven Tuecke The data grid Towards an architecture for the distributed management and analysis of large scientificc data sets Journal of Network and Computer Applications 23(3) 187-200 2000

[ I l l ]] European datagrid - web page http wwwedgorg 2003

[112]] Open grid services architecture database access and integration project - web page ht tp wwwogsadaiorguk 2003

[113]] Project spitfire - web page h t t p edg-wp2 web cern chedg-wp2spitf i r e 2003

[114]] W H Bell D Bosio W Hoschek P Kunszt G McCance and M Silander Project spitfitee - towards grid web service Informational document Global Grid Forum -Databasee Access and Integration Services Working Group 2002

[115]] B Allcock J Bester J Bresnahan A L Chervenak I Foster C Kesselman S Meder V Nefedova D Quesnel and Steven Tuecke Data management and transfer inn high-performance computational grid environments Parallel Computing Journal 28(5)749-771 2002

[116]] A W van Halderen B J Overeinder P M A Sloot R van Dantzig D H J Epema and M Livny Hierarchical resource management in the polder metacomputing initiative Parallel Computing 24(12-13)1807-1825 1998

[117]] The polder computing environment - web page h t tp wwwsc ienceuvan l researchscsSCS4html 2004

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[118]] K Iskra R G Belleman G D van Albada J Santoso P M A Sloot H E Bal H J W Spoelder and M Bubak The polder computing environment A system forr interactive distributed simulation Concurrency and Computation Practice and ExperienceExperience 14(13-15) 1313-1335 2002

[119]] A H Buss and L Jackson Distributed simulation modeling A comparison of hla corba and rmi In Proceedings of the Winter Simulation Conference pages 819-826 1998

[120]] High level architecture - web page h t t p s www dmsomi l pub l i c t rans i t ion h la 2004

[121]] High level architecture federation development and execution process (fedep) model versionn 15 Technical report Department of Defense Defense Modeling and Simula-tionn Office 1999

[122]] K Zayac A Tirado-Ramos Z Zhao P Sloot and M Bubak Grid services for hla-basedd distributed simulation frameworks In Proceedings of the First European Across GridsGrids Conference 2003

[123]] Root an object-oriented data analysis framework - web page h t t p r o o t c e r n c h 2004

[124]] P Koksal I Cingil and A Dogac A component-based workflow system with dy-namicc modifications In Proceedings of Next Generation Information Technologies and SystemsSystems (NGITS99) pages 238-255 1999

[125]] The workflow management coalition - web page httpwwwwfmcorg 2003

[126]] D Hollingsworth The workflow reference model Technical Report TC00-1003 The Workfloww Management Coalition 1994

[127]] J A Miller D Palaniswami A P Sheth K J Kochut and H Singh Webwork Meteor2ss web-based workflow management system Journal of Intelligent Information SystemsSystems 10(2) 185-215 1998

[128]] A Sheth D Worah K Kochut J Miller K Zheng D Palaniswami and S Das Thee meteor workflow management system and its use in prototyping healthcare ap-plications In Proceedings of the Towards An Electronic Patient Record (TEPR 97) ConferenceConference pages 267-278 1997

[129]] Wide Workflow on intelligent distributed database environment project - web page h t t p d i s sema esprojectsWIDE 2003

[130]] The wide project Final report Project Final Report 4111-2 ESPRIT Project 20280 1999

[131]] L Baresi F Casati S Castano S Ceri M G Fugini I Mirbel B Pernici G Pozzi andd P Grefen Wide workflow development methodology Project Deliverable 3027-6 ESPRITT Project 20280 1999

260 0 Bibliography y

[132]] L M Camarinha-Matos and H Afsarmanesh The virtual enterprise concept In L M Camarinha-Matos and H Afsarmanesh editors Infrastructures for Virtual En-terprisesterprises - Networking Industrial Enterprises chapter 1 pages 3-14 Kluwer Academic Publishers 1999

[133]] L M Camarinha-Matos and H Afsarmanesh editors Infrastructures for Virtual EnterprisesEnterprises - Networking Industrial Enterprises Kluwer Academic Publishers 1999

[134]] C Garita Federated Information Management for Virtual Enterprises Phd thesis Universityy of Amsterdam Faculty of Science 2001

[135]] G von Laszewski I Foster J Gawor P Lane N Rehn and M Russell Design-ingg grid-based problem solving environments and portals In Proceedings of the 34th AnnualAnnual Hawaii International Conference on System Sciences (HICSS-34) - Volume 9 2001

[136]] Y E Ioannidis M Livny S Gupta and N Ponnekanti Zoo A desktop experiment managementt environment In Proceedings of the 22nd International Conference on VeryVery Large Data Bases (VLDB 1996) pages 274-285 1996

[137]] Y E Ioannidis and M Livny Conceptual schemas Multi-faceted tools for desktop scientificc experiment management International Journal of Intelligent and Cooperative InformationInformation Systems l(3)451-474 1992

[138]] Pdelab - web page httpwwwwebpdelaborg 2003

[139]] I A Chen and V M Markowitz Modeling scientific experiments with an object dataa model In Proceedings of the 11th International Conference on Data Engineering (ICDE(ICDE 1995) 1995

[140]] I A Chen and V M Markowitz An overview of the object protocol model (opm) andd the opm data management tools Information Systems 20(5) 1995

[141]] Gateway portal - web page http wwwgatewayportal org 2003

[142]] G Fox T Haupt E Akarsu A Kalinichenko K-S Kim P Sheethalnath and C-H Youn The gateway system Uniform web based access to remote resources In ProceedingsProceedings of The ACM Conference on Java Grande pages 1-7 1999

[143]] M Romberg The unicore architecture seamless access to distributed resources In Pro-ceedingsceedings of the 8th IEEE International Symposium on High Performance Distributed ComputingComputing (HPDC-99) 1999

[144]] The cactus code server - web page ht tp wwwcactuscodeorg 2003

[145]] K Schuchardt B Didier and G Black Ecce - a problem solving environments evolutionn toward grid services and a web architecture Concurrency and Computation PracticePractice and Experience 14(13-15)1221-1239 2002

[146]] The virtual laboratory project - web page ht tp wwwgr idbusorgv lab 2003

[147]] V R Watson Supporting scientific analysis within collaborative problem solving environments In Proceedings of the 34th Annual Hawaii International Conference on SystemSystem Sciences (HICSS-34) - Volume 9 2001

Bibliography y 261 1

[148]] Fast Flow analysis software toolkit - web page Electronically available at h t t p wwwnasnasagovSoftwareFAST 2003

[149]] Remotefast and fastexpeditions - web page Electronically available at httpwww nasnasagovSoftwareFASTFASTexpeditionsindexhtml 2003

[150]] Virtual lab - web page h t tp p r t f e rnun i -hagen de v i r t l ab i n fo_e h tm l 2003

[151]] M Budhu Virtual laboratories for engineering education In Proceedings of the Inter-nationalnational Conference on Engineering Education 2002

[152]] C Schmid Virtual control laboratories and remote experimentation in control engi-neering In Proceedings of the 11th EAEEIE Annual Conference on Innovations in EducationEducation for Electrical and Information Engineering pages 213-218 2000

[153]] The tele-actor - web page h t t p t e l eac to r be rke ley edu 2003

[154]] Virtual control lab - web page httpwwwesrruhr-uni-bochumdeVCLab 2003

[155]] San diego supercomputer center data intensive computing Storage resource broker -webb page httpwwwsdsceduDICESRBindexhtml 2003

[156]] C Baru R Moore A Rajasekar and M Wan The sdsc storage resource broker In ProceedingsProceedings of the CASCON98 Conference 1998

[157]] A K Rajasekar M Wan and R W Moore Mysrb amp srb - components of a data grid In Proceedings of the 11th IEEE International Symposium on High Performance DistributedDistributed Computing (HPDC-11) 2002

[158]] K Bell A Chien and M Lauria A high-performance cluster storage server In Pro-ceedingsceedings of the 11th IEEE International Symposium on High Performance Distributed ComputingComputing (HPDC-11) 2002

[159]] Griphyn Grid physics network - web page ht tp wwwgriphynorg 2003

[160]] I Foster J Voumlckler M Wilde and Y Zhao Chimera A virtual data system for rep-resenting querying and automating data derivation In Proceedings of the 14th Inter-nationalnational Conference on Scientific and Statistical Database Management (SSDBM02) 2002

[161]] A Chervenak E Deelman C Kesselman L Pearlman and G Singh A metadata catalogg service for data intensive applications Technical Report GriPhyN 2002-11 GriPhyN 2002

[162]] A Choudhary M Kandemir H Nagesh J No X Shen V Taylor S More and R Thakur Data management for large scientific computations in high performance distributedd systems In Proceedings of the 8th IEEE International Symposium on High PerformancePerformance Distributed Computing (HPDC-99) 1999

[163]] E C Kaletas H Afsarmanesh and L O Hertzberger Modelling multi-disciplinary scientificc experiments and information In Proceedings of the Eighteenth International SymposiumSymposium on Computer and Information Sciences (ISCIS03) pages 75-82 2003

262 2 Bibliography y

[164]] E C Kaletas H Afsarmanesh and L O Hertzberger Virtual laboratory experimen-tationn environment data model Technical Report CS-2001-01 University of Amster-dam Informatics Institute 2001

[165]] E C Kaletas H Afsarmanesh and L O Hertzberger A methodology for integrat-ingg new scientific domains and applications in a virtual laboratory environment In ProceedingsProceedings of the 6th International Conference on Enterprise Information Systems (ICEIS(ICEIS 2004) (to appear) 2004

[166]] Jsx-java serialization to xml - web page ht tp wwwobject l ight com 2003

[167]] Electric xml - web page httpwwwthemindelectriccomexii i l indexhtml 2003

[168]] Matisse dbms - web page httpwwwmatissecom 2003

[169]] Miame minimum information about a microarray experiment - web page h t t p wwwmgedorgmiame 2003

[170]] A Brazma P Hingamp J Quackenbush G Sherlock P Spellman C Stoeck-ert J Aach W Ansorge C A Ball H C Causton T Gasterland P Glenisson F C P Holstege I F Kim V Markowitz J C Matese H Parkinson A Robin-son U Sarkans S Schulze-Kremer J Stewart R Taylor J Vilo and M Vingron Minimumm information about a microarray experiment (miame) - towards standards forr microarray data Nature Genetics 29365-371 2001

[171]] E C Kaletas H Afsarmanesh and L O Hertzberger A collaborative experimen-tationn environment for biosciences International Journal of Networking and Virtual OrganizationsOrganizations (to appear) 2004

[172]] L M Camarinha-Matos H Afsarmanesh E C Kaletas and T Cardoso Service federationn in virtual organizations In Proceedings of The Eleventh International IFIP TC5TC5 WG-52-WG-53 Conference (PROL AM AT 2001) pages 305-324 2001

[173]] C Garita E C Kaletas H Afsarmanesh and L O Hertzberger A service inter-facee definitions catalogue for virtual enterprises in tourism In Proceedings of the 5th5th IFIP International Conference on Information Technology for BALANCED AU-TOMATIONTOMATION SYSTEMS In Manufacturing and Services (BASYS 2002) pages 97-108 2002

[174]] A Belloum E C Kaletas and L O Hertzberger The jera final report Technical Reportt JERA-TN13 University of Amsterdam Informatics Institute 1999

[175]] A S Z Belloum E C Kaletas A W van Halderen H Afsarmanesh L OHertzberger and A J H Peddemors A scalable web server architecture World WideWide Web Journal 5(l)5-23 2002

[176]] A J H Peddemors and L O Hertzberger A high performance distributed database systemm for enhanced internet services In Proceedings of the 6th International Confer-enceence and Exhibition on High-Performance Computing and Networking (HPCN Europe 1998)1998) pages 469-478 1998

[177]] A Benabdelkader H Afsarmanesh E C Kaletas and L O Hertzberger Managing largee scientific multi-media data sets In Proceedings of the Workshop on Advanced DataData StorageManagement Techniques for High Performance Computing 2000

Bibliography y 263 3

[178]] A Benabdelkader H Afsarmanesh and L O Hertzberger Megastore Advanced internet-basedd electronic commerce service for music industry In Proceedings of the 11th11th International Conference on Database and Expert Systems Applications (DEXA 2000)2000) pages 869-878 2000

[179]] E C Kaletas A W van Halderen F van der Linden H Afsarmanesh and L O Hertzberger Evaluation of rcube-based switch using a real world application In ProceedingsProceedings of the 8th International Conference and Exhibition on High-Performance ComputingComputing and Networking (HPCN Europe 2000) pages 507-516 2000

[180]] A W van Halderen F van der Linden E C Kaletas and L O Hertzberger Ge applicationn and mpi benchmarking report Technical Report ARCHES II Deliverables 33222 and 3342 University of Amsterdam Informatics Institute 1999

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[89]] H Afsarmanesh C Garita Y Ugur A Frenkel and L O Hertzberger Federated in-formationn management requirements for virtual enterprises In L M Camarinha-Matos andd H Afsarmanesh editors Infrastructures for Virtual Enterprises - Networking In-dustrialdustrial Enterprises chapter 9 pages 127-146 Kluwer Academic Publishers 1999

[90]] F Tuijnman and H Afsarmanesh Management of shared data in federated cooperative peerr environment International Journal of Intelligent and Cooperative Information SystemsSystems 2(4) 1993

[91]] A Benabdelkader Information Integration Among Heterogeneous and Autonomous ApplicationsApplications Phd thesis University of Amsterdam Faculty of Science 2002

[92]] V Kashyap and A Sheth Information Brokering Accross Heterogeneous Digital Data -- A Metadata-Based Approach Kluwer Academic Publishers 2000

[93]] H Afsarmanesh M Wiedijk LO Hertzberger FJ Negreiros Gomes A Provedel RC Martins and EOT Salles Cooperation of cim expert systems supported by peer Journal of Studies in Informatics and Control 5(2) 157-169 1996

[94]] J C Lavariega and S D Urban Donaji A semantic architecture for multidatabase systems In Proceedings of the Workshop in Intelligent Information Integration pages 39-54 1998

[95]] L M Haas P M Schwarz P Kodali E Kotlar J E Rice and W C Swope Dis-coverylink A system for integrated access to life sciences data sources IBM Systems JournalJournal 40(2)489-511 2001

[96]] V Josifovski P M Schwarz L M Haas and E Lin Garlic a new flavor of federated queryy processing for db2 In Proceedings of the ACM SIGMOD Conference pages 524-532 2002

[97]] Virtuoso universal server - web page httpwwwopenlinkswcomvirtuosoindex htm 2003

[98]] J Smith A Gounaris P Watson N W Paton A A A Fernandes and R Sakellar-iou Distributed query processing on the grid In Proceedings of the Third Workshop onon Grid Computing (GRID 2002) pages 279-290 2002

[99]] I Foster C Kesselman and S Tuecke The anatomy of the grid Enabling scalable virtuall organizations International Journal of Supercomputer Applications 15(3) 200-222 2001

[100]] Global grid forum - web page httpwwwglobalgridforumorg 2003

[101]] I Foster C Kesselman J Nick and S Tuecke The physiology of the grid An open gridd services architecture for distributed systems integration Technical report Global Gridd Forum - Open Grid Service Infrastructure Working Group 2002

[102]] Web services description language (wsdl) version 12 - web page httpwwww3org TR2002WD-wsdll2-20020709 2003

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[103]] D Angulo R Aydt F Berman A Chien K Cooper H Dail J Dongarra I Foster D Gannon L Johnsson K Kennedy Kesselman C M Mazina J Mellor-Crummey D Reed O Sievert L Torczon S Vadhiyar and R Wolski Toward a framework for preparingg and executing adaptive grid programs In Proceedings of the 16th Interna-tionaltional Parallel and Distributed Processing Symposium (IPDPS 2002) 2002

[104]] D Angulo I Foster C Liu and L Yang Design and evaluation of a resource selection frameworkk for grid applications In Proceedings of IEEE International Symposium on HighHigh Performance Distributed Computing (HPDC-11) pages 63-72 2002

[105]] A Iamnitchi and I Foster On fully decentralized resource discovery in grid environ-ments In Proceedings of International Workshop on Grid Computing pages 51-62 2001

[106]] I Foster C Kesselman G Tsudik and S Tuecke A security architecture for compu-tationall grids In Proceedings of the 5th ACM Conference on Computer and Commu-nicationsnications Security Conference pages 83-92 1998

[107]] K Keahey and V Welch Fine-grain authorization for resource management in the gridd environment In Proceedings of Grid2002 Workshop 2002

[108]] Global grid forum database access and integration services working group - web page httpwwwgridforumorg6_DATAdaishtm 2003

[109]] Uk e-science programme database task force - web page http wwwcsmanacuk gr id-dbdbtff html 2003

[110]] A Chervenak I Foster C Kesselman C Salisbury and Steven Tuecke The data grid Towards an architecture for the distributed management and analysis of large scientificc data sets Journal of Network and Computer Applications 23(3) 187-200 2000

[ I l l ]] European datagrid - web page http wwwedgorg 2003

[112]] Open grid services architecture database access and integration project - web page ht tp wwwogsadaiorguk 2003

[113]] Project spitfire - web page h t t p edg-wp2 web cern chedg-wp2spitf i r e 2003

[114]] W H Bell D Bosio W Hoschek P Kunszt G McCance and M Silander Project spitfitee - towards grid web service Informational document Global Grid Forum -Databasee Access and Integration Services Working Group 2002

[115]] B Allcock J Bester J Bresnahan A L Chervenak I Foster C Kesselman S Meder V Nefedova D Quesnel and Steven Tuecke Data management and transfer inn high-performance computational grid environments Parallel Computing Journal 28(5)749-771 2002

[116]] A W van Halderen B J Overeinder P M A Sloot R van Dantzig D H J Epema and M Livny Hierarchical resource management in the polder metacomputing initiative Parallel Computing 24(12-13)1807-1825 1998

[117]] The polder computing environment - web page h t tp wwwsc ienceuvan l researchscsSCS4html 2004

Bibliography y 259 9

[118]] K Iskra R G Belleman G D van Albada J Santoso P M A Sloot H E Bal H J W Spoelder and M Bubak The polder computing environment A system forr interactive distributed simulation Concurrency and Computation Practice and ExperienceExperience 14(13-15) 1313-1335 2002

[119]] A H Buss and L Jackson Distributed simulation modeling A comparison of hla corba and rmi In Proceedings of the Winter Simulation Conference pages 819-826 1998

[120]] High level architecture - web page h t t p s www dmsomi l pub l i c t rans i t ion h la 2004

[121]] High level architecture federation development and execution process (fedep) model versionn 15 Technical report Department of Defense Defense Modeling and Simula-tionn Office 1999

[122]] K Zayac A Tirado-Ramos Z Zhao P Sloot and M Bubak Grid services for hla-basedd distributed simulation frameworks In Proceedings of the First European Across GridsGrids Conference 2003

[123]] Root an object-oriented data analysis framework - web page h t t p r o o t c e r n c h 2004

[124]] P Koksal I Cingil and A Dogac A component-based workflow system with dy-namicc modifications In Proceedings of Next Generation Information Technologies and SystemsSystems (NGITS99) pages 238-255 1999

[125]] The workflow management coalition - web page httpwwwwfmcorg 2003

[126]] D Hollingsworth The workflow reference model Technical Report TC00-1003 The Workfloww Management Coalition 1994

[127]] J A Miller D Palaniswami A P Sheth K J Kochut and H Singh Webwork Meteor2ss web-based workflow management system Journal of Intelligent Information SystemsSystems 10(2) 185-215 1998

[128]] A Sheth D Worah K Kochut J Miller K Zheng D Palaniswami and S Das Thee meteor workflow management system and its use in prototyping healthcare ap-plications In Proceedings of the Towards An Electronic Patient Record (TEPR 97) ConferenceConference pages 267-278 1997

[129]] Wide Workflow on intelligent distributed database environment project - web page h t t p d i s sema esprojectsWIDE 2003

[130]] The wide project Final report Project Final Report 4111-2 ESPRIT Project 20280 1999

[131]] L Baresi F Casati S Castano S Ceri M G Fugini I Mirbel B Pernici G Pozzi andd P Grefen Wide workflow development methodology Project Deliverable 3027-6 ESPRITT Project 20280 1999

260 0 Bibliography y

[132]] L M Camarinha-Matos and H Afsarmanesh The virtual enterprise concept In L M Camarinha-Matos and H Afsarmanesh editors Infrastructures for Virtual En-terprisesterprises - Networking Industrial Enterprises chapter 1 pages 3-14 Kluwer Academic Publishers 1999

[133]] L M Camarinha-Matos and H Afsarmanesh editors Infrastructures for Virtual EnterprisesEnterprises - Networking Industrial Enterprises Kluwer Academic Publishers 1999

[134]] C Garita Federated Information Management for Virtual Enterprises Phd thesis Universityy of Amsterdam Faculty of Science 2001

[135]] G von Laszewski I Foster J Gawor P Lane N Rehn and M Russell Design-ingg grid-based problem solving environments and portals In Proceedings of the 34th AnnualAnnual Hawaii International Conference on System Sciences (HICSS-34) - Volume 9 2001

[136]] Y E Ioannidis M Livny S Gupta and N Ponnekanti Zoo A desktop experiment managementt environment In Proceedings of the 22nd International Conference on VeryVery Large Data Bases (VLDB 1996) pages 274-285 1996

[137]] Y E Ioannidis and M Livny Conceptual schemas Multi-faceted tools for desktop scientificc experiment management International Journal of Intelligent and Cooperative InformationInformation Systems l(3)451-474 1992

[138]] Pdelab - web page httpwwwwebpdelaborg 2003

[139]] I A Chen and V M Markowitz Modeling scientific experiments with an object dataa model In Proceedings of the 11th International Conference on Data Engineering (ICDE(ICDE 1995) 1995

[140]] I A Chen and V M Markowitz An overview of the object protocol model (opm) andd the opm data management tools Information Systems 20(5) 1995

[141]] Gateway portal - web page http wwwgatewayportal org 2003

[142]] G Fox T Haupt E Akarsu A Kalinichenko K-S Kim P Sheethalnath and C-H Youn The gateway system Uniform web based access to remote resources In ProceedingsProceedings of The ACM Conference on Java Grande pages 1-7 1999

[143]] M Romberg The unicore architecture seamless access to distributed resources In Pro-ceedingsceedings of the 8th IEEE International Symposium on High Performance Distributed ComputingComputing (HPDC-99) 1999

[144]] The cactus code server - web page ht tp wwwcactuscodeorg 2003

[145]] K Schuchardt B Didier and G Black Ecce - a problem solving environments evolutionn toward grid services and a web architecture Concurrency and Computation PracticePractice and Experience 14(13-15)1221-1239 2002

[146]] The virtual laboratory project - web page ht tp wwwgr idbusorgv lab 2003

[147]] V R Watson Supporting scientific analysis within collaborative problem solving environments In Proceedings of the 34th Annual Hawaii International Conference on SystemSystem Sciences (HICSS-34) - Volume 9 2001

Bibliography y 261 1

[148]] Fast Flow analysis software toolkit - web page Electronically available at h t t p wwwnasnasagovSoftwareFAST 2003

[149]] Remotefast and fastexpeditions - web page Electronically available at httpwww nasnasagovSoftwareFASTFASTexpeditionsindexhtml 2003

[150]] Virtual lab - web page h t tp p r t f e rnun i -hagen de v i r t l ab i n fo_e h tm l 2003

[151]] M Budhu Virtual laboratories for engineering education In Proceedings of the Inter-nationalnational Conference on Engineering Education 2002

[152]] C Schmid Virtual control laboratories and remote experimentation in control engi-neering In Proceedings of the 11th EAEEIE Annual Conference on Innovations in EducationEducation for Electrical and Information Engineering pages 213-218 2000

[153]] The tele-actor - web page h t t p t e l eac to r be rke ley edu 2003

[154]] Virtual control lab - web page httpwwwesrruhr-uni-bochumdeVCLab 2003

[155]] San diego supercomputer center data intensive computing Storage resource broker -webb page httpwwwsdsceduDICESRBindexhtml 2003

[156]] C Baru R Moore A Rajasekar and M Wan The sdsc storage resource broker In ProceedingsProceedings of the CASCON98 Conference 1998

[157]] A K Rajasekar M Wan and R W Moore Mysrb amp srb - components of a data grid In Proceedings of the 11th IEEE International Symposium on High Performance DistributedDistributed Computing (HPDC-11) 2002

[158]] K Bell A Chien and M Lauria A high-performance cluster storage server In Pro-ceedingsceedings of the 11th IEEE International Symposium on High Performance Distributed ComputingComputing (HPDC-11) 2002

[159]] Griphyn Grid physics network - web page ht tp wwwgriphynorg 2003

[160]] I Foster J Voumlckler M Wilde and Y Zhao Chimera A virtual data system for rep-resenting querying and automating data derivation In Proceedings of the 14th Inter-nationalnational Conference on Scientific and Statistical Database Management (SSDBM02) 2002

[161]] A Chervenak E Deelman C Kesselman L Pearlman and G Singh A metadata catalogg service for data intensive applications Technical Report GriPhyN 2002-11 GriPhyN 2002

[162]] A Choudhary M Kandemir H Nagesh J No X Shen V Taylor S More and R Thakur Data management for large scientific computations in high performance distributedd systems In Proceedings of the 8th IEEE International Symposium on High PerformancePerformance Distributed Computing (HPDC-99) 1999

[163]] E C Kaletas H Afsarmanesh and L O Hertzberger Modelling multi-disciplinary scientificc experiments and information In Proceedings of the Eighteenth International SymposiumSymposium on Computer and Information Sciences (ISCIS03) pages 75-82 2003

262 2 Bibliography y

[164]] E C Kaletas H Afsarmanesh and L O Hertzberger Virtual laboratory experimen-tationn environment data model Technical Report CS-2001-01 University of Amster-dam Informatics Institute 2001

[165]] E C Kaletas H Afsarmanesh and L O Hertzberger A methodology for integrat-ingg new scientific domains and applications in a virtual laboratory environment In ProceedingsProceedings of the 6th International Conference on Enterprise Information Systems (ICEIS(ICEIS 2004) (to appear) 2004

[166]] Jsx-java serialization to xml - web page ht tp wwwobject l ight com 2003

[167]] Electric xml - web page httpwwwthemindelectriccomexii i l indexhtml 2003

[168]] Matisse dbms - web page httpwwwmatissecom 2003

[169]] Miame minimum information about a microarray experiment - web page h t t p wwwmgedorgmiame 2003

[170]] A Brazma P Hingamp J Quackenbush G Sherlock P Spellman C Stoeck-ert J Aach W Ansorge C A Ball H C Causton T Gasterland P Glenisson F C P Holstege I F Kim V Markowitz J C Matese H Parkinson A Robin-son U Sarkans S Schulze-Kremer J Stewart R Taylor J Vilo and M Vingron Minimumm information about a microarray experiment (miame) - towards standards forr microarray data Nature Genetics 29365-371 2001

[171]] E C Kaletas H Afsarmanesh and L O Hertzberger A collaborative experimen-tationn environment for biosciences International Journal of Networking and Virtual OrganizationsOrganizations (to appear) 2004

[172]] L M Camarinha-Matos H Afsarmanesh E C Kaletas and T Cardoso Service federationn in virtual organizations In Proceedings of The Eleventh International IFIP TC5TC5 WG-52-WG-53 Conference (PROL AM AT 2001) pages 305-324 2001

[173]] C Garita E C Kaletas H Afsarmanesh and L O Hertzberger A service inter-facee definitions catalogue for virtual enterprises in tourism In Proceedings of the 5th5th IFIP International Conference on Information Technology for BALANCED AU-TOMATIONTOMATION SYSTEMS In Manufacturing and Services (BASYS 2002) pages 97-108 2002

[174]] A Belloum E C Kaletas and L O Hertzberger The jera final report Technical Reportt JERA-TN13 University of Amsterdam Informatics Institute 1999

[175]] A S Z Belloum E C Kaletas A W van Halderen H Afsarmanesh L OHertzberger and A J H Peddemors A scalable web server architecture World WideWide Web Journal 5(l)5-23 2002

[176]] A J H Peddemors and L O Hertzberger A high performance distributed database systemm for enhanced internet services In Proceedings of the 6th International Confer-enceence and Exhibition on High-Performance Computing and Networking (HPCN Europe 1998)1998) pages 469-478 1998

[177]] A Benabdelkader H Afsarmanesh E C Kaletas and L O Hertzberger Managing largee scientific multi-media data sets In Proceedings of the Workshop on Advanced DataData StorageManagement Techniques for High Performance Computing 2000

Bibliography y 263 3

[178]] A Benabdelkader H Afsarmanesh and L O Hertzberger Megastore Advanced internet-basedd electronic commerce service for music industry In Proceedings of the 11th11th International Conference on Database and Expert Systems Applications (DEXA 2000)2000) pages 869-878 2000

[179]] E C Kaletas A W van Halderen F van der Linden H Afsarmanesh and L O Hertzberger Evaluation of rcube-based switch using a real world application In ProceedingsProceedings of the 8th International Conference and Exhibition on High-Performance ComputingComputing and Networking (HPCN Europe 2000) pages 507-516 2000

[180]] A W van Halderen F van der Linden E C Kaletas and L O Hertzberger Ge applicationn and mpi benchmarking report Technical Report ARCHES II Deliverables 33222 and 3342 University of Amsterdam Informatics Institute 1999

Page 9: UvA-DARE (Digital Academic Repository) Scientific ... · Matthews,, and K. D. O'Neill. A multidisicplinary scientific data portal. In Proceedings ofof the 9th International Conference

258 8 Bibliography y

[103]] D Angulo R Aydt F Berman A Chien K Cooper H Dail J Dongarra I Foster D Gannon L Johnsson K Kennedy Kesselman C M Mazina J Mellor-Crummey D Reed O Sievert L Torczon S Vadhiyar and R Wolski Toward a framework for preparingg and executing adaptive grid programs In Proceedings of the 16th Interna-tionaltional Parallel and Distributed Processing Symposium (IPDPS 2002) 2002

[104]] D Angulo I Foster C Liu and L Yang Design and evaluation of a resource selection frameworkk for grid applications In Proceedings of IEEE International Symposium on HighHigh Performance Distributed Computing (HPDC-11) pages 63-72 2002

[105]] A Iamnitchi and I Foster On fully decentralized resource discovery in grid environ-ments In Proceedings of International Workshop on Grid Computing pages 51-62 2001

[106]] I Foster C Kesselman G Tsudik and S Tuecke A security architecture for compu-tationall grids In Proceedings of the 5th ACM Conference on Computer and Commu-nicationsnications Security Conference pages 83-92 1998

[107]] K Keahey and V Welch Fine-grain authorization for resource management in the gridd environment In Proceedings of Grid2002 Workshop 2002

[108]] Global grid forum database access and integration services working group - web page httpwwwgridforumorg6_DATAdaishtm 2003

[109]] Uk e-science programme database task force - web page http wwwcsmanacuk gr id-dbdbtff html 2003

[110]] A Chervenak I Foster C Kesselman C Salisbury and Steven Tuecke The data grid Towards an architecture for the distributed management and analysis of large scientificc data sets Journal of Network and Computer Applications 23(3) 187-200 2000

[ I l l ]] European datagrid - web page http wwwedgorg 2003

[112]] Open grid services architecture database access and integration project - web page ht tp wwwogsadaiorguk 2003

[113]] Project spitfire - web page h t t p edg-wp2 web cern chedg-wp2spitf i r e 2003

[114]] W H Bell D Bosio W Hoschek P Kunszt G McCance and M Silander Project spitfitee - towards grid web service Informational document Global Grid Forum -Databasee Access and Integration Services Working Group 2002

[115]] B Allcock J Bester J Bresnahan A L Chervenak I Foster C Kesselman S Meder V Nefedova D Quesnel and Steven Tuecke Data management and transfer inn high-performance computational grid environments Parallel Computing Journal 28(5)749-771 2002

[116]] A W van Halderen B J Overeinder P M A Sloot R van Dantzig D H J Epema and M Livny Hierarchical resource management in the polder metacomputing initiative Parallel Computing 24(12-13)1807-1825 1998

[117]] The polder computing environment - web page h t tp wwwsc ienceuvan l researchscsSCS4html 2004

Bibliography y 259 9

[118]] K Iskra R G Belleman G D van Albada J Santoso P M A Sloot H E Bal H J W Spoelder and M Bubak The polder computing environment A system forr interactive distributed simulation Concurrency and Computation Practice and ExperienceExperience 14(13-15) 1313-1335 2002

[119]] A H Buss and L Jackson Distributed simulation modeling A comparison of hla corba and rmi In Proceedings of the Winter Simulation Conference pages 819-826 1998

[120]] High level architecture - web page h t t p s www dmsomi l pub l i c t rans i t ion h la 2004

[121]] High level architecture federation development and execution process (fedep) model versionn 15 Technical report Department of Defense Defense Modeling and Simula-tionn Office 1999

[122]] K Zayac A Tirado-Ramos Z Zhao P Sloot and M Bubak Grid services for hla-basedd distributed simulation frameworks In Proceedings of the First European Across GridsGrids Conference 2003

[123]] Root an object-oriented data analysis framework - web page h t t p r o o t c e r n c h 2004

[124]] P Koksal I Cingil and A Dogac A component-based workflow system with dy-namicc modifications In Proceedings of Next Generation Information Technologies and SystemsSystems (NGITS99) pages 238-255 1999

[125]] The workflow management coalition - web page httpwwwwfmcorg 2003

[126]] D Hollingsworth The workflow reference model Technical Report TC00-1003 The Workfloww Management Coalition 1994

[127]] J A Miller D Palaniswami A P Sheth K J Kochut and H Singh Webwork Meteor2ss web-based workflow management system Journal of Intelligent Information SystemsSystems 10(2) 185-215 1998

[128]] A Sheth D Worah K Kochut J Miller K Zheng D Palaniswami and S Das Thee meteor workflow management system and its use in prototyping healthcare ap-plications In Proceedings of the Towards An Electronic Patient Record (TEPR 97) ConferenceConference pages 267-278 1997

[129]] Wide Workflow on intelligent distributed database environment project - web page h t t p d i s sema esprojectsWIDE 2003

[130]] The wide project Final report Project Final Report 4111-2 ESPRIT Project 20280 1999

[131]] L Baresi F Casati S Castano S Ceri M G Fugini I Mirbel B Pernici G Pozzi andd P Grefen Wide workflow development methodology Project Deliverable 3027-6 ESPRITT Project 20280 1999

260 0 Bibliography y

[132]] L M Camarinha-Matos and H Afsarmanesh The virtual enterprise concept In L M Camarinha-Matos and H Afsarmanesh editors Infrastructures for Virtual En-terprisesterprises - Networking Industrial Enterprises chapter 1 pages 3-14 Kluwer Academic Publishers 1999

[133]] L M Camarinha-Matos and H Afsarmanesh editors Infrastructures for Virtual EnterprisesEnterprises - Networking Industrial Enterprises Kluwer Academic Publishers 1999

[134]] C Garita Federated Information Management for Virtual Enterprises Phd thesis Universityy of Amsterdam Faculty of Science 2001

[135]] G von Laszewski I Foster J Gawor P Lane N Rehn and M Russell Design-ingg grid-based problem solving environments and portals In Proceedings of the 34th AnnualAnnual Hawaii International Conference on System Sciences (HICSS-34) - Volume 9 2001

[136]] Y E Ioannidis M Livny S Gupta and N Ponnekanti Zoo A desktop experiment managementt environment In Proceedings of the 22nd International Conference on VeryVery Large Data Bases (VLDB 1996) pages 274-285 1996

[137]] Y E Ioannidis and M Livny Conceptual schemas Multi-faceted tools for desktop scientificc experiment management International Journal of Intelligent and Cooperative InformationInformation Systems l(3)451-474 1992

[138]] Pdelab - web page httpwwwwebpdelaborg 2003

[139]] I A Chen and V M Markowitz Modeling scientific experiments with an object dataa model In Proceedings of the 11th International Conference on Data Engineering (ICDE(ICDE 1995) 1995

[140]] I A Chen and V M Markowitz An overview of the object protocol model (opm) andd the opm data management tools Information Systems 20(5) 1995

[141]] Gateway portal - web page http wwwgatewayportal org 2003

[142]] G Fox T Haupt E Akarsu A Kalinichenko K-S Kim P Sheethalnath and C-H Youn The gateway system Uniform web based access to remote resources In ProceedingsProceedings of The ACM Conference on Java Grande pages 1-7 1999

[143]] M Romberg The unicore architecture seamless access to distributed resources In Pro-ceedingsceedings of the 8th IEEE International Symposium on High Performance Distributed ComputingComputing (HPDC-99) 1999

[144]] The cactus code server - web page ht tp wwwcactuscodeorg 2003

[145]] K Schuchardt B Didier and G Black Ecce - a problem solving environments evolutionn toward grid services and a web architecture Concurrency and Computation PracticePractice and Experience 14(13-15)1221-1239 2002

[146]] The virtual laboratory project - web page ht tp wwwgr idbusorgv lab 2003

[147]] V R Watson Supporting scientific analysis within collaborative problem solving environments In Proceedings of the 34th Annual Hawaii International Conference on SystemSystem Sciences (HICSS-34) - Volume 9 2001

Bibliography y 261 1

[148]] Fast Flow analysis software toolkit - web page Electronically available at h t t p wwwnasnasagovSoftwareFAST 2003

[149]] Remotefast and fastexpeditions - web page Electronically available at httpwww nasnasagovSoftwareFASTFASTexpeditionsindexhtml 2003

[150]] Virtual lab - web page h t tp p r t f e rnun i -hagen de v i r t l ab i n fo_e h tm l 2003

[151]] M Budhu Virtual laboratories for engineering education In Proceedings of the Inter-nationalnational Conference on Engineering Education 2002

[152]] C Schmid Virtual control laboratories and remote experimentation in control engi-neering In Proceedings of the 11th EAEEIE Annual Conference on Innovations in EducationEducation for Electrical and Information Engineering pages 213-218 2000

[153]] The tele-actor - web page h t t p t e l eac to r be rke ley edu 2003

[154]] Virtual control lab - web page httpwwwesrruhr-uni-bochumdeVCLab 2003

[155]] San diego supercomputer center data intensive computing Storage resource broker -webb page httpwwwsdsceduDICESRBindexhtml 2003

[156]] C Baru R Moore A Rajasekar and M Wan The sdsc storage resource broker In ProceedingsProceedings of the CASCON98 Conference 1998

[157]] A K Rajasekar M Wan and R W Moore Mysrb amp srb - components of a data grid In Proceedings of the 11th IEEE International Symposium on High Performance DistributedDistributed Computing (HPDC-11) 2002

[158]] K Bell A Chien and M Lauria A high-performance cluster storage server In Pro-ceedingsceedings of the 11th IEEE International Symposium on High Performance Distributed ComputingComputing (HPDC-11) 2002

[159]] Griphyn Grid physics network - web page ht tp wwwgriphynorg 2003

[160]] I Foster J Voumlckler M Wilde and Y Zhao Chimera A virtual data system for rep-resenting querying and automating data derivation In Proceedings of the 14th Inter-nationalnational Conference on Scientific and Statistical Database Management (SSDBM02) 2002

[161]] A Chervenak E Deelman C Kesselman L Pearlman and G Singh A metadata catalogg service for data intensive applications Technical Report GriPhyN 2002-11 GriPhyN 2002

[162]] A Choudhary M Kandemir H Nagesh J No X Shen V Taylor S More and R Thakur Data management for large scientific computations in high performance distributedd systems In Proceedings of the 8th IEEE International Symposium on High PerformancePerformance Distributed Computing (HPDC-99) 1999

[163]] E C Kaletas H Afsarmanesh and L O Hertzberger Modelling multi-disciplinary scientificc experiments and information In Proceedings of the Eighteenth International SymposiumSymposium on Computer and Information Sciences (ISCIS03) pages 75-82 2003

262 2 Bibliography y

[164]] E C Kaletas H Afsarmanesh and L O Hertzberger Virtual laboratory experimen-tationn environment data model Technical Report CS-2001-01 University of Amster-dam Informatics Institute 2001

[165]] E C Kaletas H Afsarmanesh and L O Hertzberger A methodology for integrat-ingg new scientific domains and applications in a virtual laboratory environment In ProceedingsProceedings of the 6th International Conference on Enterprise Information Systems (ICEIS(ICEIS 2004) (to appear) 2004

[166]] Jsx-java serialization to xml - web page ht tp wwwobject l ight com 2003

[167]] Electric xml - web page httpwwwthemindelectriccomexii i l indexhtml 2003

[168]] Matisse dbms - web page httpwwwmatissecom 2003

[169]] Miame minimum information about a microarray experiment - web page h t t p wwwmgedorgmiame 2003

[170]] A Brazma P Hingamp J Quackenbush G Sherlock P Spellman C Stoeck-ert J Aach W Ansorge C A Ball H C Causton T Gasterland P Glenisson F C P Holstege I F Kim V Markowitz J C Matese H Parkinson A Robin-son U Sarkans S Schulze-Kremer J Stewart R Taylor J Vilo and M Vingron Minimumm information about a microarray experiment (miame) - towards standards forr microarray data Nature Genetics 29365-371 2001

[171]] E C Kaletas H Afsarmanesh and L O Hertzberger A collaborative experimen-tationn environment for biosciences International Journal of Networking and Virtual OrganizationsOrganizations (to appear) 2004

[172]] L M Camarinha-Matos H Afsarmanesh E C Kaletas and T Cardoso Service federationn in virtual organizations In Proceedings of The Eleventh International IFIP TC5TC5 WG-52-WG-53 Conference (PROL AM AT 2001) pages 305-324 2001

[173]] C Garita E C Kaletas H Afsarmanesh and L O Hertzberger A service inter-facee definitions catalogue for virtual enterprises in tourism In Proceedings of the 5th5th IFIP International Conference on Information Technology for BALANCED AU-TOMATIONTOMATION SYSTEMS In Manufacturing and Services (BASYS 2002) pages 97-108 2002

[174]] A Belloum E C Kaletas and L O Hertzberger The jera final report Technical Reportt JERA-TN13 University of Amsterdam Informatics Institute 1999

[175]] A S Z Belloum E C Kaletas A W van Halderen H Afsarmanesh L OHertzberger and A J H Peddemors A scalable web server architecture World WideWide Web Journal 5(l)5-23 2002

[176]] A J H Peddemors and L O Hertzberger A high performance distributed database systemm for enhanced internet services In Proceedings of the 6th International Confer-enceence and Exhibition on High-Performance Computing and Networking (HPCN Europe 1998)1998) pages 469-478 1998

[177]] A Benabdelkader H Afsarmanesh E C Kaletas and L O Hertzberger Managing largee scientific multi-media data sets In Proceedings of the Workshop on Advanced DataData StorageManagement Techniques for High Performance Computing 2000

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[178]] A Benabdelkader H Afsarmanesh and L O Hertzberger Megastore Advanced internet-basedd electronic commerce service for music industry In Proceedings of the 11th11th International Conference on Database and Expert Systems Applications (DEXA 2000)2000) pages 869-878 2000

[179]] E C Kaletas A W van Halderen F van der Linden H Afsarmanesh and L O Hertzberger Evaluation of rcube-based switch using a real world application In ProceedingsProceedings of the 8th International Conference and Exhibition on High-Performance ComputingComputing and Networking (HPCN Europe 2000) pages 507-516 2000

[180]] A W van Halderen F van der Linden E C Kaletas and L O Hertzberger Ge applicationn and mpi benchmarking report Technical Report ARCHES II Deliverables 33222 and 3342 University of Amsterdam Informatics Institute 1999

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[119]] A H Buss and L Jackson Distributed simulation modeling A comparison of hla corba and rmi In Proceedings of the Winter Simulation Conference pages 819-826 1998

[120]] High level architecture - web page h t t p s www dmsomi l pub l i c t rans i t ion h la 2004

[121]] High level architecture federation development and execution process (fedep) model versionn 15 Technical report Department of Defense Defense Modeling and Simula-tionn Office 1999

[122]] K Zayac A Tirado-Ramos Z Zhao P Sloot and M Bubak Grid services for hla-basedd distributed simulation frameworks In Proceedings of the First European Across GridsGrids Conference 2003

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[124]] P Koksal I Cingil and A Dogac A component-based workflow system with dy-namicc modifications In Proceedings of Next Generation Information Technologies and SystemsSystems (NGITS99) pages 238-255 1999

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[130]] The wide project Final report Project Final Report 4111-2 ESPRIT Project 20280 1999

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[133]] L M Camarinha-Matos and H Afsarmanesh editors Infrastructures for Virtual EnterprisesEnterprises - Networking Industrial Enterprises Kluwer Academic Publishers 1999

[134]] C Garita Federated Information Management for Virtual Enterprises Phd thesis Universityy of Amsterdam Faculty of Science 2001

[135]] G von Laszewski I Foster J Gawor P Lane N Rehn and M Russell Design-ingg grid-based problem solving environments and portals In Proceedings of the 34th AnnualAnnual Hawaii International Conference on System Sciences (HICSS-34) - Volume 9 2001

[136]] Y E Ioannidis M Livny S Gupta and N Ponnekanti Zoo A desktop experiment managementt environment In Proceedings of the 22nd International Conference on VeryVery Large Data Bases (VLDB 1996) pages 274-285 1996

[137]] Y E Ioannidis and M Livny Conceptual schemas Multi-faceted tools for desktop scientificc experiment management International Journal of Intelligent and Cooperative InformationInformation Systems l(3)451-474 1992

[138]] Pdelab - web page httpwwwwebpdelaborg 2003

[139]] I A Chen and V M Markowitz Modeling scientific experiments with an object dataa model In Proceedings of the 11th International Conference on Data Engineering (ICDE(ICDE 1995) 1995

[140]] I A Chen and V M Markowitz An overview of the object protocol model (opm) andd the opm data management tools Information Systems 20(5) 1995

[141]] Gateway portal - web page http wwwgatewayportal org 2003

[142]] G Fox T Haupt E Akarsu A Kalinichenko K-S Kim P Sheethalnath and C-H Youn The gateway system Uniform web based access to remote resources In ProceedingsProceedings of The ACM Conference on Java Grande pages 1-7 1999

[143]] M Romberg The unicore architecture seamless access to distributed resources In Pro-ceedingsceedings of the 8th IEEE International Symposium on High Performance Distributed ComputingComputing (HPDC-99) 1999

[144]] The cactus code server - web page ht tp wwwcactuscodeorg 2003

[145]] K Schuchardt B Didier and G Black Ecce - a problem solving environments evolutionn toward grid services and a web architecture Concurrency and Computation PracticePractice and Experience 14(13-15)1221-1239 2002

[146]] The virtual laboratory project - web page ht tp wwwgr idbusorgv lab 2003

[147]] V R Watson Supporting scientific analysis within collaborative problem solving environments In Proceedings of the 34th Annual Hawaii International Conference on SystemSystem Sciences (HICSS-34) - Volume 9 2001

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[148]] Fast Flow analysis software toolkit - web page Electronically available at h t t p wwwnasnasagovSoftwareFAST 2003

[149]] Remotefast and fastexpeditions - web page Electronically available at httpwww nasnasagovSoftwareFASTFASTexpeditionsindexhtml 2003

[150]] Virtual lab - web page h t tp p r t f e rnun i -hagen de v i r t l ab i n fo_e h tm l 2003

[151]] M Budhu Virtual laboratories for engineering education In Proceedings of the Inter-nationalnational Conference on Engineering Education 2002

[152]] C Schmid Virtual control laboratories and remote experimentation in control engi-neering In Proceedings of the 11th EAEEIE Annual Conference on Innovations in EducationEducation for Electrical and Information Engineering pages 213-218 2000

[153]] The tele-actor - web page h t t p t e l eac to r be rke ley edu 2003

[154]] Virtual control lab - web page httpwwwesrruhr-uni-bochumdeVCLab 2003

[155]] San diego supercomputer center data intensive computing Storage resource broker -webb page httpwwwsdsceduDICESRBindexhtml 2003

[156]] C Baru R Moore A Rajasekar and M Wan The sdsc storage resource broker In ProceedingsProceedings of the CASCON98 Conference 1998

[157]] A K Rajasekar M Wan and R W Moore Mysrb amp srb - components of a data grid In Proceedings of the 11th IEEE International Symposium on High Performance DistributedDistributed Computing (HPDC-11) 2002

[158]] K Bell A Chien and M Lauria A high-performance cluster storage server In Pro-ceedingsceedings of the 11th IEEE International Symposium on High Performance Distributed ComputingComputing (HPDC-11) 2002

[159]] Griphyn Grid physics network - web page ht tp wwwgriphynorg 2003

[160]] I Foster J Voumlckler M Wilde and Y Zhao Chimera A virtual data system for rep-resenting querying and automating data derivation In Proceedings of the 14th Inter-nationalnational Conference on Scientific and Statistical Database Management (SSDBM02) 2002

[161]] A Chervenak E Deelman C Kesselman L Pearlman and G Singh A metadata catalogg service for data intensive applications Technical Report GriPhyN 2002-11 GriPhyN 2002

[162]] A Choudhary M Kandemir H Nagesh J No X Shen V Taylor S More and R Thakur Data management for large scientific computations in high performance distributedd systems In Proceedings of the 8th IEEE International Symposium on High PerformancePerformance Distributed Computing (HPDC-99) 1999

[163]] E C Kaletas H Afsarmanesh and L O Hertzberger Modelling multi-disciplinary scientificc experiments and information In Proceedings of the Eighteenth International SymposiumSymposium on Computer and Information Sciences (ISCIS03) pages 75-82 2003

262 2 Bibliography y

[164]] E C Kaletas H Afsarmanesh and L O Hertzberger Virtual laboratory experimen-tationn environment data model Technical Report CS-2001-01 University of Amster-dam Informatics Institute 2001

[165]] E C Kaletas H Afsarmanesh and L O Hertzberger A methodology for integrat-ingg new scientific domains and applications in a virtual laboratory environment In ProceedingsProceedings of the 6th International Conference on Enterprise Information Systems (ICEIS(ICEIS 2004) (to appear) 2004

[166]] Jsx-java serialization to xml - web page ht tp wwwobject l ight com 2003

[167]] Electric xml - web page httpwwwthemindelectriccomexii i l indexhtml 2003

[168]] Matisse dbms - web page httpwwwmatissecom 2003

[169]] Miame minimum information about a microarray experiment - web page h t t p wwwmgedorgmiame 2003

[170]] A Brazma P Hingamp J Quackenbush G Sherlock P Spellman C Stoeck-ert J Aach W Ansorge C A Ball H C Causton T Gasterland P Glenisson F C P Holstege I F Kim V Markowitz J C Matese H Parkinson A Robin-son U Sarkans S Schulze-Kremer J Stewart R Taylor J Vilo and M Vingron Minimumm information about a microarray experiment (miame) - towards standards forr microarray data Nature Genetics 29365-371 2001

[171]] E C Kaletas H Afsarmanesh and L O Hertzberger A collaborative experimen-tationn environment for biosciences International Journal of Networking and Virtual OrganizationsOrganizations (to appear) 2004

[172]] L M Camarinha-Matos H Afsarmanesh E C Kaletas and T Cardoso Service federationn in virtual organizations In Proceedings of The Eleventh International IFIP TC5TC5 WG-52-WG-53 Conference (PROL AM AT 2001) pages 305-324 2001

[173]] C Garita E C Kaletas H Afsarmanesh and L O Hertzberger A service inter-facee definitions catalogue for virtual enterprises in tourism In Proceedings of the 5th5th IFIP International Conference on Information Technology for BALANCED AU-TOMATIONTOMATION SYSTEMS In Manufacturing and Services (BASYS 2002) pages 97-108 2002

[174]] A Belloum E C Kaletas and L O Hertzberger The jera final report Technical Reportt JERA-TN13 University of Amsterdam Informatics Institute 1999

[175]] A S Z Belloum E C Kaletas A W van Halderen H Afsarmanesh L OHertzberger and A J H Peddemors A scalable web server architecture World WideWide Web Journal 5(l)5-23 2002

[176]] A J H Peddemors and L O Hertzberger A high performance distributed database systemm for enhanced internet services In Proceedings of the 6th International Confer-enceence and Exhibition on High-Performance Computing and Networking (HPCN Europe 1998)1998) pages 469-478 1998

[177]] A Benabdelkader H Afsarmanesh E C Kaletas and L O Hertzberger Managing largee scientific multi-media data sets In Proceedings of the Workshop on Advanced DataData StorageManagement Techniques for High Performance Computing 2000

Bibliography y 263 3

[178]] A Benabdelkader H Afsarmanesh and L O Hertzberger Megastore Advanced internet-basedd electronic commerce service for music industry In Proceedings of the 11th11th International Conference on Database and Expert Systems Applications (DEXA 2000)2000) pages 869-878 2000

[179]] E C Kaletas A W van Halderen F van der Linden H Afsarmanesh and L O Hertzberger Evaluation of rcube-based switch using a real world application In ProceedingsProceedings of the 8th International Conference and Exhibition on High-Performance ComputingComputing and Networking (HPCN Europe 2000) pages 507-516 2000

[180]] A W van Halderen F van der Linden E C Kaletas and L O Hertzberger Ge applicationn and mpi benchmarking report Technical Report ARCHES II Deliverables 33222 and 3342 University of Amsterdam Informatics Institute 1999

Page 11: UvA-DARE (Digital Academic Repository) Scientific ... · Matthews,, and K. D. O'Neill. A multidisicplinary scientific data portal. In Proceedings ofof the 9th International Conference

260 0 Bibliography y

[132]] L M Camarinha-Matos and H Afsarmanesh The virtual enterprise concept In L M Camarinha-Matos and H Afsarmanesh editors Infrastructures for Virtual En-terprisesterprises - Networking Industrial Enterprises chapter 1 pages 3-14 Kluwer Academic Publishers 1999

[133]] L M Camarinha-Matos and H Afsarmanesh editors Infrastructures for Virtual EnterprisesEnterprises - Networking Industrial Enterprises Kluwer Academic Publishers 1999

[134]] C Garita Federated Information Management for Virtual Enterprises Phd thesis Universityy of Amsterdam Faculty of Science 2001

[135]] G von Laszewski I Foster J Gawor P Lane N Rehn and M Russell Design-ingg grid-based problem solving environments and portals In Proceedings of the 34th AnnualAnnual Hawaii International Conference on System Sciences (HICSS-34) - Volume 9 2001

[136]] Y E Ioannidis M Livny S Gupta and N Ponnekanti Zoo A desktop experiment managementt environment In Proceedings of the 22nd International Conference on VeryVery Large Data Bases (VLDB 1996) pages 274-285 1996

[137]] Y E Ioannidis and M Livny Conceptual schemas Multi-faceted tools for desktop scientificc experiment management International Journal of Intelligent and Cooperative InformationInformation Systems l(3)451-474 1992

[138]] Pdelab - web page httpwwwwebpdelaborg 2003

[139]] I A Chen and V M Markowitz Modeling scientific experiments with an object dataa model In Proceedings of the 11th International Conference on Data Engineering (ICDE(ICDE 1995) 1995

[140]] I A Chen and V M Markowitz An overview of the object protocol model (opm) andd the opm data management tools Information Systems 20(5) 1995

[141]] Gateway portal - web page http wwwgatewayportal org 2003

[142]] G Fox T Haupt E Akarsu A Kalinichenko K-S Kim P Sheethalnath and C-H Youn The gateway system Uniform web based access to remote resources In ProceedingsProceedings of The ACM Conference on Java Grande pages 1-7 1999

[143]] M Romberg The unicore architecture seamless access to distributed resources In Pro-ceedingsceedings of the 8th IEEE International Symposium on High Performance Distributed ComputingComputing (HPDC-99) 1999

[144]] The cactus code server - web page ht tp wwwcactuscodeorg 2003

[145]] K Schuchardt B Didier and G Black Ecce - a problem solving environments evolutionn toward grid services and a web architecture Concurrency and Computation PracticePractice and Experience 14(13-15)1221-1239 2002

[146]] The virtual laboratory project - web page ht tp wwwgr idbusorgv lab 2003

[147]] V R Watson Supporting scientific analysis within collaborative problem solving environments In Proceedings of the 34th Annual Hawaii International Conference on SystemSystem Sciences (HICSS-34) - Volume 9 2001

Bibliography y 261 1

[148]] Fast Flow analysis software toolkit - web page Electronically available at h t t p wwwnasnasagovSoftwareFAST 2003

[149]] Remotefast and fastexpeditions - web page Electronically available at httpwww nasnasagovSoftwareFASTFASTexpeditionsindexhtml 2003

[150]] Virtual lab - web page h t tp p r t f e rnun i -hagen de v i r t l ab i n fo_e h tm l 2003

[151]] M Budhu Virtual laboratories for engineering education In Proceedings of the Inter-nationalnational Conference on Engineering Education 2002

[152]] C Schmid Virtual control laboratories and remote experimentation in control engi-neering In Proceedings of the 11th EAEEIE Annual Conference on Innovations in EducationEducation for Electrical and Information Engineering pages 213-218 2000

[153]] The tele-actor - web page h t t p t e l eac to r be rke ley edu 2003

[154]] Virtual control lab - web page httpwwwesrruhr-uni-bochumdeVCLab 2003

[155]] San diego supercomputer center data intensive computing Storage resource broker -webb page httpwwwsdsceduDICESRBindexhtml 2003

[156]] C Baru R Moore A Rajasekar and M Wan The sdsc storage resource broker In ProceedingsProceedings of the CASCON98 Conference 1998

[157]] A K Rajasekar M Wan and R W Moore Mysrb amp srb - components of a data grid In Proceedings of the 11th IEEE International Symposium on High Performance DistributedDistributed Computing (HPDC-11) 2002

[158]] K Bell A Chien and M Lauria A high-performance cluster storage server In Pro-ceedingsceedings of the 11th IEEE International Symposium on High Performance Distributed ComputingComputing (HPDC-11) 2002

[159]] Griphyn Grid physics network - web page ht tp wwwgriphynorg 2003

[160]] I Foster J Voumlckler M Wilde and Y Zhao Chimera A virtual data system for rep-resenting querying and automating data derivation In Proceedings of the 14th Inter-nationalnational Conference on Scientific and Statistical Database Management (SSDBM02) 2002

[161]] A Chervenak E Deelman C Kesselman L Pearlman and G Singh A metadata catalogg service for data intensive applications Technical Report GriPhyN 2002-11 GriPhyN 2002

[162]] A Choudhary M Kandemir H Nagesh J No X Shen V Taylor S More and R Thakur Data management for large scientific computations in high performance distributedd systems In Proceedings of the 8th IEEE International Symposium on High PerformancePerformance Distributed Computing (HPDC-99) 1999

[163]] E C Kaletas H Afsarmanesh and L O Hertzberger Modelling multi-disciplinary scientificc experiments and information In Proceedings of the Eighteenth International SymposiumSymposium on Computer and Information Sciences (ISCIS03) pages 75-82 2003

262 2 Bibliography y

[164]] E C Kaletas H Afsarmanesh and L O Hertzberger Virtual laboratory experimen-tationn environment data model Technical Report CS-2001-01 University of Amster-dam Informatics Institute 2001

[165]] E C Kaletas H Afsarmanesh and L O Hertzberger A methodology for integrat-ingg new scientific domains and applications in a virtual laboratory environment In ProceedingsProceedings of the 6th International Conference on Enterprise Information Systems (ICEIS(ICEIS 2004) (to appear) 2004

[166]] Jsx-java serialization to xml - web page ht tp wwwobject l ight com 2003

[167]] Electric xml - web page httpwwwthemindelectriccomexii i l indexhtml 2003

[168]] Matisse dbms - web page httpwwwmatissecom 2003

[169]] Miame minimum information about a microarray experiment - web page h t t p wwwmgedorgmiame 2003

[170]] A Brazma P Hingamp J Quackenbush G Sherlock P Spellman C Stoeck-ert J Aach W Ansorge C A Ball H C Causton T Gasterland P Glenisson F C P Holstege I F Kim V Markowitz J C Matese H Parkinson A Robin-son U Sarkans S Schulze-Kremer J Stewart R Taylor J Vilo and M Vingron Minimumm information about a microarray experiment (miame) - towards standards forr microarray data Nature Genetics 29365-371 2001

[171]] E C Kaletas H Afsarmanesh and L O Hertzberger A collaborative experimen-tationn environment for biosciences International Journal of Networking and Virtual OrganizationsOrganizations (to appear) 2004

[172]] L M Camarinha-Matos H Afsarmanesh E C Kaletas and T Cardoso Service federationn in virtual organizations In Proceedings of The Eleventh International IFIP TC5TC5 WG-52-WG-53 Conference (PROL AM AT 2001) pages 305-324 2001

[173]] C Garita E C Kaletas H Afsarmanesh and L O Hertzberger A service inter-facee definitions catalogue for virtual enterprises in tourism In Proceedings of the 5th5th IFIP International Conference on Information Technology for BALANCED AU-TOMATIONTOMATION SYSTEMS In Manufacturing and Services (BASYS 2002) pages 97-108 2002

[174]] A Belloum E C Kaletas and L O Hertzberger The jera final report Technical Reportt JERA-TN13 University of Amsterdam Informatics Institute 1999

[175]] A S Z Belloum E C Kaletas A W van Halderen H Afsarmanesh L OHertzberger and A J H Peddemors A scalable web server architecture World WideWide Web Journal 5(l)5-23 2002

[176]] A J H Peddemors and L O Hertzberger A high performance distributed database systemm for enhanced internet services In Proceedings of the 6th International Confer-enceence and Exhibition on High-Performance Computing and Networking (HPCN Europe 1998)1998) pages 469-478 1998

[177]] A Benabdelkader H Afsarmanesh E C Kaletas and L O Hertzberger Managing largee scientific multi-media data sets In Proceedings of the Workshop on Advanced DataData StorageManagement Techniques for High Performance Computing 2000

Bibliography y 263 3

[178]] A Benabdelkader H Afsarmanesh and L O Hertzberger Megastore Advanced internet-basedd electronic commerce service for music industry In Proceedings of the 11th11th International Conference on Database and Expert Systems Applications (DEXA 2000)2000) pages 869-878 2000

[179]] E C Kaletas A W van Halderen F van der Linden H Afsarmanesh and L O Hertzberger Evaluation of rcube-based switch using a real world application In ProceedingsProceedings of the 8th International Conference and Exhibition on High-Performance ComputingComputing and Networking (HPCN Europe 2000) pages 507-516 2000

[180]] A W van Halderen F van der Linden E C Kaletas and L O Hertzberger Ge applicationn and mpi benchmarking report Technical Report ARCHES II Deliverables 33222 and 3342 University of Amsterdam Informatics Institute 1999

Page 12: UvA-DARE (Digital Academic Repository) Scientific ... · Matthews,, and K. D. O'Neill. A multidisicplinary scientific data portal. In Proceedings ofof the 9th International Conference

Bibliography y 261 1

[148]] Fast Flow analysis software toolkit - web page Electronically available at h t t p wwwnasnasagovSoftwareFAST 2003

[149]] Remotefast and fastexpeditions - web page Electronically available at httpwww nasnasagovSoftwareFASTFASTexpeditionsindexhtml 2003

[150]] Virtual lab - web page h t tp p r t f e rnun i -hagen de v i r t l ab i n fo_e h tm l 2003

[151]] M Budhu Virtual laboratories for engineering education In Proceedings of the Inter-nationalnational Conference on Engineering Education 2002

[152]] C Schmid Virtual control laboratories and remote experimentation in control engi-neering In Proceedings of the 11th EAEEIE Annual Conference on Innovations in EducationEducation for Electrical and Information Engineering pages 213-218 2000

[153]] The tele-actor - web page h t t p t e l eac to r be rke ley edu 2003

[154]] Virtual control lab - web page httpwwwesrruhr-uni-bochumdeVCLab 2003

[155]] San diego supercomputer center data intensive computing Storage resource broker -webb page httpwwwsdsceduDICESRBindexhtml 2003

[156]] C Baru R Moore A Rajasekar and M Wan The sdsc storage resource broker In ProceedingsProceedings of the CASCON98 Conference 1998

[157]] A K Rajasekar M Wan and R W Moore Mysrb amp srb - components of a data grid In Proceedings of the 11th IEEE International Symposium on High Performance DistributedDistributed Computing (HPDC-11) 2002

[158]] K Bell A Chien and M Lauria A high-performance cluster storage server In Pro-ceedingsceedings of the 11th IEEE International Symposium on High Performance Distributed ComputingComputing (HPDC-11) 2002

[159]] Griphyn Grid physics network - web page ht tp wwwgriphynorg 2003

[160]] I Foster J Voumlckler M Wilde and Y Zhao Chimera A virtual data system for rep-resenting querying and automating data derivation In Proceedings of the 14th Inter-nationalnational Conference on Scientific and Statistical Database Management (SSDBM02) 2002

[161]] A Chervenak E Deelman C Kesselman L Pearlman and G Singh A metadata catalogg service for data intensive applications Technical Report GriPhyN 2002-11 GriPhyN 2002

[162]] A Choudhary M Kandemir H Nagesh J No X Shen V Taylor S More and R Thakur Data management for large scientific computations in high performance distributedd systems In Proceedings of the 8th IEEE International Symposium on High PerformancePerformance Distributed Computing (HPDC-99) 1999

[163]] E C Kaletas H Afsarmanesh and L O Hertzberger Modelling multi-disciplinary scientificc experiments and information In Proceedings of the Eighteenth International SymposiumSymposium on Computer and Information Sciences (ISCIS03) pages 75-82 2003

262 2 Bibliography y

[164]] E C Kaletas H Afsarmanesh and L O Hertzberger Virtual laboratory experimen-tationn environment data model Technical Report CS-2001-01 University of Amster-dam Informatics Institute 2001

[165]] E C Kaletas H Afsarmanesh and L O Hertzberger A methodology for integrat-ingg new scientific domains and applications in a virtual laboratory environment In ProceedingsProceedings of the 6th International Conference on Enterprise Information Systems (ICEIS(ICEIS 2004) (to appear) 2004

[166]] Jsx-java serialization to xml - web page ht tp wwwobject l ight com 2003

[167]] Electric xml - web page httpwwwthemindelectriccomexii i l indexhtml 2003

[168]] Matisse dbms - web page httpwwwmatissecom 2003

[169]] Miame minimum information about a microarray experiment - web page h t t p wwwmgedorgmiame 2003

[170]] A Brazma P Hingamp J Quackenbush G Sherlock P Spellman C Stoeck-ert J Aach W Ansorge C A Ball H C Causton T Gasterland P Glenisson F C P Holstege I F Kim V Markowitz J C Matese H Parkinson A Robin-son U Sarkans S Schulze-Kremer J Stewart R Taylor J Vilo and M Vingron Minimumm information about a microarray experiment (miame) - towards standards forr microarray data Nature Genetics 29365-371 2001

[171]] E C Kaletas H Afsarmanesh and L O Hertzberger A collaborative experimen-tationn environment for biosciences International Journal of Networking and Virtual OrganizationsOrganizations (to appear) 2004

[172]] L M Camarinha-Matos H Afsarmanesh E C Kaletas and T Cardoso Service federationn in virtual organizations In Proceedings of The Eleventh International IFIP TC5TC5 WG-52-WG-53 Conference (PROL AM AT 2001) pages 305-324 2001

[173]] C Garita E C Kaletas H Afsarmanesh and L O Hertzberger A service inter-facee definitions catalogue for virtual enterprises in tourism In Proceedings of the 5th5th IFIP International Conference on Information Technology for BALANCED AU-TOMATIONTOMATION SYSTEMS In Manufacturing and Services (BASYS 2002) pages 97-108 2002

[174]] A Belloum E C Kaletas and L O Hertzberger The jera final report Technical Reportt JERA-TN13 University of Amsterdam Informatics Institute 1999

[175]] A S Z Belloum E C Kaletas A W van Halderen H Afsarmanesh L OHertzberger and A J H Peddemors A scalable web server architecture World WideWide Web Journal 5(l)5-23 2002

[176]] A J H Peddemors and L O Hertzberger A high performance distributed database systemm for enhanced internet services In Proceedings of the 6th International Confer-enceence and Exhibition on High-Performance Computing and Networking (HPCN Europe 1998)1998) pages 469-478 1998

[177]] A Benabdelkader H Afsarmanesh E C Kaletas and L O Hertzberger Managing largee scientific multi-media data sets In Proceedings of the Workshop on Advanced DataData StorageManagement Techniques for High Performance Computing 2000

Bibliography y 263 3

[178]] A Benabdelkader H Afsarmanesh and L O Hertzberger Megastore Advanced internet-basedd electronic commerce service for music industry In Proceedings of the 11th11th International Conference on Database and Expert Systems Applications (DEXA 2000)2000) pages 869-878 2000

[179]] E C Kaletas A W van Halderen F van der Linden H Afsarmanesh and L O Hertzberger Evaluation of rcube-based switch using a real world application In ProceedingsProceedings of the 8th International Conference and Exhibition on High-Performance ComputingComputing and Networking (HPCN Europe 2000) pages 507-516 2000

[180]] A W van Halderen F van der Linden E C Kaletas and L O Hertzberger Ge applicationn and mpi benchmarking report Technical Report ARCHES II Deliverables 33222 and 3342 University of Amsterdam Informatics Institute 1999

Page 13: UvA-DARE (Digital Academic Repository) Scientific ... · Matthews,, and K. D. O'Neill. A multidisicplinary scientific data portal. In Proceedings ofof the 9th International Conference

262 2 Bibliography y

[164]] E C Kaletas H Afsarmanesh and L O Hertzberger Virtual laboratory experimen-tationn environment data model Technical Report CS-2001-01 University of Amster-dam Informatics Institute 2001

[165]] E C Kaletas H Afsarmanesh and L O Hertzberger A methodology for integrat-ingg new scientific domains and applications in a virtual laboratory environment In ProceedingsProceedings of the 6th International Conference on Enterprise Information Systems (ICEIS(ICEIS 2004) (to appear) 2004

[166]] Jsx-java serialization to xml - web page ht tp wwwobject l ight com 2003

[167]] Electric xml - web page httpwwwthemindelectriccomexii i l indexhtml 2003

[168]] Matisse dbms - web page httpwwwmatissecom 2003

[169]] Miame minimum information about a microarray experiment - web page h t t p wwwmgedorgmiame 2003

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