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Unit 3: Genetics • The Cell Cycle + DNA structure/function • Mitosis and Meiosis • Mendelian Genetics (aka - fun with Punnett squares) • DNA replication
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Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

Dec 15, 2015

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Page 1: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

Unit 3: Genetics

• The Cell Cycle + DNA structure/function• Mitosis and Meiosis• Mendelian Genetics (aka - fun with Punnett squares)

• DNA replication

Page 2: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

MITOSIS MEIOSIS

preceded by replication of chromosomes?

yes yes

# of rounds of cell division 1 2

# of daughter cells 2 4

# of chromosomes in daughter cells compared to parent cell

same as parent cell half of parent cell

daughter cells genetically identical to parent cell?

yes no

sister cells thus produced identical to one another?

yes no

happens in diploid cells, haploid cells, both, or neither?

both(depending on organism)

diploid

crossing over (synapsis)? no yes

Yesterday’s Exit Ticket

Page 3: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.
Page 4: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

Today’s Agenda

• Where does variation come from?• Mendelian Genetics, Part One

Page 5: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

• Mutations (changes in an organism’s DNA) are the original source of all genetic variation

• Mutations create different versions of genes called alleles

Sources of genetic variation

Page 6: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

Clarity check: homologous chromosomes

SAME gene, different ALLELES

Gene for hair color;Allele for blonde hair

Gene for hair color;Allele for blonde hair

Gene for hair color; allelefor brown hair

Gene for hair color; allelefor brown hair

Page 7: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

• The behavior of chromosomes during meiosis and fertilization reshuffles alleles and chromosomes every generation

• Three mechanisms contribute to genetic variation:a) Independent assortment of chromosomesb) Crossing overc) Random fertilization

Sources of genetic variation

Page 8: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

Fig. 13-8b

Metaphase Iof meiosis I

a) Independent assortmentSources of genetic variation

• Homologous pairs of chromosomes orient randomly during Meiosis I

maternal and paternal homologs assort into daughter cells independently of the other pairs

Blue can be on top or bottom

Page 9: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

Fig. 13-11-2

Possibility 1 Possibility 2

with n = 2there are

4 possibilitiesfor the lineupduring

Meiosis II

4 possible assortments of chromosomes in the gametes

a) Independent assortmentSources of genetic variation

Page 10: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

Fig. 13-11-3

Possibility 1 Possibility 2

Metaphase II

Daughtercells

Combination 1 Combination 2 Combination 3 Combination 4

a) Independent assortmentSources of genetic variation

Page 11: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

• “2n rule”: the number of possible chromosome sorting combinations = 2n

For humans (n = 23), there are 223 = 8,388,608 possible combinations of chromosomes based on independent assortment alone!

a) Independent assortmentSources of genetic variation

Page 12: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

• homologous chromosomes pair up gene by gene and exchange homologous segments

• This combines alleles that originated from two (grand)parents into a single chromosome

b) Crossing over (Prophase of Meiosis I)

Sources of genetic variation

blond hair from G’pa

blue eyes from G’pa Mom’s

ovary cell

red hair from G’ma

brown eyes from G’ma

red hair from G’ma

blue eyes from G’pa

red hair from G’pa

brown eyes from G’ma

Page 13: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

Pair ofhomologs

Nonsisterchromatidsheld togetherduring synapsis

during Meiosis I(at anaphase I)

during Meiosis II(at anaphase II)

Daughtercells

Recombinant chromosomes

A single crossing over event leads to 4 genetically unique daughter cells!

b) crossing overSources of genetic variation

Early inMeiosis I

Page 14: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

What is n for the cells shown here?A.1B.2C.3D.4E.5

Human cells → n = 23

Page 15: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

Which cells in this picture are haploid?A.allB.noneC.those above line #1D.those below line #1E.only those below line #2

1

2

Page 16: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

A detailed look at meiosis

FIRST CELL DIVISION = “MEIOSIS I”

2nd CELL DIVISION = “MEIOSIS II”

Page 17: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

c) Random fertilization

Sources of genetic variation

8.4 million possible gametes

8.4 million possible gametes

> 70 trillion possible offspring!!!

Page 18: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

Today’s Agenda

• Where does variation come from?• Mendelian Genetics, Part One

Page 19: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

Foundations of GeneticsChapter 14

Page 20: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

Outline

1. The work of Gregor Mendel2. Probability and genetic outcomes3. Ah, if only it were so simple: complications

on genes and traits

Page 21: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

Fig. 14-2a

StamensCarpel

Parentalgeneration(P)

TECHNIQUE: “crossing” or “hybridizing” true-breeding varieties

1

2

3

4

a) The scientific method1. Mendel

Page 22: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

Fig. 14-3-3

EXPERIMENT

P Generation

(true-breeding parents) Purple

flowers Whiteflowers

F1 Generation

(hybrids) All plants hadpurple flowers

F2 Generation

705 purple-floweredplants

224 white-floweredplants

1. Mendel

Page 23: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

1. Mendel

Making sense of the data:

Why were ALL the F1 flowers purple?

Why were some F2 flowers white?

Why was the ratio in the F2 generation 3:1?

To explain the data, Mendel developed a model

Page 24: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

Mendel’s Model: 4 related hypotheses(remember, DNA had not yet been discovered!)

1. Alternative versions of heritable “particles” (i.e., different alleles of the same gene)

Mendel’s explanatory frameworkMendel’s explanatory framework1. Mendel

Page 25: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

Mendel’s Model: 4 related hypotheses

1. Alternative versions of heritable “factors” (i.e., alleles)

2. For each character an organism inherits two alleles, one from each parent

Mendel’s explanatory frameworkMendel’s explanatory framework1. Mendel

Page 26: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

Fig. 14-4

Allele for purple flowers

Homologouspair ofchromosomes

Location of lower color gene

Allele for white flowers

Diploid organisms

Mendel’s explanatory frameworkMendel’s explanatory framework1. Mendel

Page 27: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

Mendel’s Model: 4 related hypotheses

1. Alternative versions of heritable “factors” (i.e., alleles)

2. For each character an organism inherits two alleles, one from each parent

(i) all F1 purple (ii) some F2 white,

(iii) F2 purple:white ratio 3:1

(i) all F1 purple (ii) some F2 white,

(iii) F2 purple:white ratio 3:1

Mendel’s explanatory frameworkMendel’s explanatory framework1. Mendel

Page 28: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

Mendel’s Model: 4 related hypotheses

1. Alternative versions of heritable “factors” (i.e., alleles)

2. For each character an organism inherits two alleles, one from each parent

3. If the two alleles at a locus differ, then one (the dominant allele) determines the organism’s appearance, and the other (the recessive allele) has no noticeable effect on appearance

(i) all F1 purple (ii) some F2 white,

(iii) F2 purple:white ratio 3:1

(i) all F1 purple (ii) some F2 white,

(iii) F2 purple:white ratio 3:1

Mendel’s explanatory frameworkMendel’s explanatory framework1. Mendel

Page 29: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

Mendel’s Model: 4 related hypotheses

1. Alternative versions of heritable “factors” (i.e., alleles)

2. For each character an organism inherits two alleles, one from each parent

3. Some alleles are “dominant”, others “recessive”

Mendel’s explanatory frameworkMendel’s explanatory framework1. Mendel

4. “Law of segregation” = the two alleles for a character are separated (segregated) during gamete formation and end up in different gametes

Page 30: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

Mendel’s Model: 4 related hypotheses1. Alternative versions of heritable “factors” (i.e., alleles) account for

variations in inherited characters

2. For each character an organism inherits two alleles, one from each parent

3. Some alleles are “dominant”, others “recessive”

b) Mendel’s explanatory frameworkb) Mendel’s explanatory framework1. Mendel

4. “Law of segregation”

(i) all F1 purple (ii) some F2 white,

(iii) F2 purple:white ratio 3:1

(i) all F1 purple (ii) some F2 white,

(iii) F2 purple:white ratio 3:1

Page 31: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

Outline

1. The work of Gregor Mendel2. Probability and genetic outcomes3. Ah, if only it were so simple: complications

on genes and traits

Page 32: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

F1 individuals and their gametes

2. Probability and genetic outcomes2. Probability and genetic outcomes

EXPERIMENT

P Generation

(true-breeding parents) Purple

flowers Whiteflowers

F1 Generation

(hybrids) All plants hadpurple flowers

RR rr

homozygous

Page 33: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

F1 individuals and their gametes

2. Probability and genetic outcomes2. Probability and genetic outcomes

F1 Generation

(hybrids) All plants hadpurple flowers

Possible gamete types (with respect to flower color)?

Page 34: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

Fig. 14-5-3

P Generation

Appearance:Genetic makeup:

Gametes:

Purple flowers White flowersRR

R

rr

r

F1 Generation

Gametes:

Genetic makeup:Appearance: Purple flowers

Rr

R r1/21/2

F2 Generation

Sperm

Eggs

R

RRR Rr

r

rRr rr

3 1

R R

r

r

Rr Rr

Rr Rr

heterozygous

Page 35: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

Fig. 14-5-3

Mendel’s “Law” of segregation is used to construct a “Punnett square”

this simple square tells you the expected frequencies of genotypes and phenotypes from a particular cross

Page 36: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

Fig. 14-5-3

P Generation

Appearance:Genetic makeup:

Gametes:

Purple flowers White flowersRR

R

rr

r

F1 Generation

Gametes:

Genetic makeup:Appearance: Purple flowers

Rr

R r1/21/2

F2 Generation

Sperm

Eggs

R

RRR Rr

r

rRr rr

3 1

Reviewing the numbers with respect to this flower color gene: 2 alleles x 2 alleles = 4 outcomes only 3 distinct genetic types, or genotypes, 1:2:1 only two distinct traits, or phenotypes, 3:1

Page 37: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

Testcross: a useful toolHow can we figure out the GENOTYPE of a purple flower?

could be PP or Pp

Page 38: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

Testcross: a useful toolHow can we figure out the GENOTYPE of a purple

flower?

x

PP or Pp?

PP

Pp

pp

(A)

(B)

(C)What do we cross the purple flower with?

Page 39: Unit 3: Genetics The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication.

Today’s Exit Ticket

• Create and complete two Punnet squares:1) A testcross of a heterozygote (rr x Rr)2) A testcross of a homozygous dominant individual

(rr x RR)

• Explain why using a homozygous recessive individual is useful for distinguishing between Rr and RR.