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Understanding Genetics Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Dr. Dennis Onks Director Director Middle TN Research Center Middle TN Research Center University of Tennessee University of Tennessee
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Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Dec 24, 2015

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Page 1: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Understanding GeneticsUnderstanding Genetics For Use InFor Use In Goat ProductionGoat Production

Dr. Dennis OnksDr. Dennis OnksDirectorDirectorMiddle TN Research CenterMiddle TN Research CenterUniversity of TennesseeUniversity of Tennessee

Page 2: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

PHENOTYPEPHENOTYPE

AN ANIMAL’S VISUAL EXPRESSION ORAN ANIMAL’S VISUAL EXPRESSION ORPERFORMANCE IN ANY TRAITPERFORMANCE IN ANY TRAIT

The Phenotype is the outcome of The Phenotype is the outcome of Genetic Transfer as developed Genetic Transfer as developed in a production Environmentin a production Environment

Page 3: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

PHENOTYPEPHENOTYPE

Defined as the sum of the genetic Defined as the sum of the genetic and environmental variationand environmental variation

The Genetic variation accounts for 25% ofThe Genetic variation accounts for 25% ofThe Phenotype while the Environment The Phenotype while the Environment Accounts for Accounts for 75%!75%!

Page 4: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Sound Breeding ProgramSound Breeding Program

Maximum Genetic Improvement occurs Maximum Genetic Improvement occurs In a Herd Environment that allows theIn a Herd Environment that allows theImproved Genetics to be Improved Genetics to be ExpressedExpressed

Page 5: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Sources of Sources of Environmental VariationEnvironmental Variation

1.1. WeatherWeather2.2. Land TopographyLand Topography3.3. Structural ResourcesStructural Resources4.4. Forages and FeedingForages and Feeding5.5. Health and SanitationHealth and Sanitation

Page 6: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

How Traits are InheritedHow Traits are Inherited

Genetic Variation is the study ofGenetic Variation is the study of

•All body cells contain “Blueprints” with All body cells contain “Blueprints” with instructions as to how an animal will look or instructions as to how an animal will look or act etc.act etc.

•DNA or Deoxyribonucleic Acid contains the DNA or Deoxyribonucleic Acid contains the genes of traits in the double helix ribbons genes of traits in the double helix ribbons located in every celllocated in every cell

Page 7: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

GENEGENE

The combination of genes are attached to The combination of genes are attached to chromosomes which guide the animal to expresschromosomes which guide the animal to expressA trait or responseA trait or response

http://library.thinkquest.orghttp://library.thinkquest.org

Page 8: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Species differ in chromosomesSpecies differ in chromosomes

Humans Humans 23 pairs of chromosomes23 pairs of chromosomes

Cattle Cattle 30 pairs of chromosomes30 pairs of chromosomes

SheepSheep 27 pairs of chromosomes27 pairs of chromosomes

SwineSwine 19 pairs of chromosomes19 pairs of chromosomes

Chicken Chicken 39 pairs of chromosomes39 pairs of chromosomes

GoatGoat 30 pairs of chromosomes30 pairs of chromosomes

HorseHorse 16 pairs of chromosomes16 pairs of chromosomes

Page 9: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

How Traits are InheritedHow Traits are InheritedThe science of ½’s since each living animal receives a The science of ½’s since each living animal receives a Sample ½ of its genetics from its father and a sample ½Sample ½ of its genetics from its father and a sample ½ of its genetics from its mother.of its genetics from its mother.The process of halving is done by MeiosisThe process of halving is done by Meiosis

Page 10: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Gene DominanceGene Dominance

One Gene One Gene overshadows overshadows The expression of its The expression of its other pair (alleleother pair (allele)

WW and WW and Ww Ww = White = White

We’re heterozygousWe’re heterozygous (different)(different)

Page 11: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Recessive GenesRecessive Genes•The gene that is The gene that is overshadowed by a overshadowed by a dominant gene. dominant gene. Recessive genes can only Recessive genes can only be expressed when they be expressed when they both are presentboth are present

RED COAT COLOR = wwRED COAT COLOR = ww

We’re HomozygousWe’re Homozygous(the same)(the same)

Page 12: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

QUALITATIVE QUALITATIVE TRAITSTRAITS

TRAITS THAT ARE AFFECTEDTRAITS THAT ARE AFFECTEDBY A SINGLE OR A FEWBY A SINGLE OR A FEWPAIR OF GENESPAIR OF GENES

COAT COLORCOAT COLORTEETHTEETHHORNSHORNS

Page 13: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

QUANTITATIVE TRAITSQUANTITATIVE TRAITS

TRAITS AFFECTED BY NUMEROUSTRAITS AFFECTED BY NUMEROUS PAIRS OF GENESPAIRS OF GENES

The thousands of genes present makeThe thousands of genes present makecountless combinations possible in ancountless combinations possible in ananimal. Since genes are too small toanimal. Since genes are too small toidentify individually, they express theiridentify individually, they express theirpresence by such outward effects aspresence by such outward effects asdifferences in growth, carcass or differences in growth, carcass or

reproduction traitsreproduction traits

Page 14: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Quantitative Traits (cont’d)Quantitative Traits (cont’d)Growth traitsGrowth traits

Birth weightBirth weightWeaning weightWeaning weightYearling weightYearling weightGrowth rate (ADG)Growth rate (ADG)Frame sizeFrame size

Carcass traitsCarcass traitsRib eye areaRib eye areaFat thicknessFat thicknessMarblingMarbling

Reproduction traitsReproduction traitsfertility/adaptabilityfertility/adaptability

Page 15: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Is the buck on the left bigger because he had Is the buck on the left bigger because he had better genetics for growth or because he was better genetics for growth or because he was provided a better environment?provided a better environment?

Which buck has the best genetics for growth?Which buck has the best genetics for growth?

Page 16: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

IMPROVEMENT OF ANY IMPROVEMENT OF ANY TRAIT DEPENDS:TRAIT DEPENDS:

MEASURING DIFFERENCES IN A TRAITMEASURING DIFFERENCES IN A TRAIT

ACCURATELY IDENTIFYING SUPERIORACCURATELY IDENTIFYING SUPERIORINDIVIDUALS IN THE TRAITINDIVIDUALS IN THE TRAIT

USING SUPERIOR INDIVIDUALS AS PARENTSUSING SUPERIOR INDIVIDUALS AS PARENTS

HOW HERITABLE THE TRAIT IS (heritability)HOW HERITABLE THE TRAIT IS (heritability)

Page 17: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

What is Selection?What is Selection?• Choosing animals to be parents for the next Choosing animals to be parents for the next

generation to produce certain characteristicsgeneration to produce certain characteristics• Low Birth weightLow Birth weight• Heavier Weaning WeightHeavier Weaning Weight• Gaining FastGaining Fast• Horned or PolledHorned or Polled• TemperamentTemperament• Better Eating QualityBetter Eating Quality

Page 18: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Heritability(hHeritability(h22))

ReproductionReproductionfertilityfertility,etc.,etc.

ReproductionReproductionfertilityfertility,etc.,etc.

ProductionProductiongrowthgrowth

ProductionProductiongrowthgrowth

ProductProductcarcasscarcass

ProductProductcarcasscarcass

LowLowLowLow

ModerateModerateModerateModerate

HighHighHighHigh

((Heritability is a measure of how a trait will Heritability is a measure of how a trait will respond to selectionrespond to selection))

Percentage of the differences (measured or observed) in a trait Percentage of the differences (measured or observed) in a trait between animals that are transmitted to the offspring.between animals that are transmitted to the offspring.

Page 19: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Low Heritable Traits

• Birth Interval 5-10%

• Number Born 15%

• Rear Legs 15%

• Udder Support 20%

• Reproduction 15%

Page 20: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Moderately Heritable Traits

• Birth Weight 30-40%

• Weaning Weight 20-30%

• Yearling Weight 40%

• Feed Conversion 40%

• Quality Grade 40%

• Ribeye Area 40-45%

• Muscling 40-45%

Page 21: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Highly Heritable Traits

• Mature Weight 65%

• Milk Fat 55%

• Stature, Frame 45-50%

• Carcass Weight 45-50%

• Scrotal Circumference 50%

Page 22: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Selection for traits is ImpactedSelection for traits is Impactedby the by the Correlation(rCorrelation(r22))

Between TraitsBetween Traits

• Genetic Correlation measures the genetic association between traits

• Phenotypic Correlation measures the local or environmental association between traits

• Correlation ranges in value of +1.0 to –1.0 (indicates the direction of association)

Page 23: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Phenotypic CorrelationsBodyWT Length Heart Girth Backfat Loin Area

Length

Heart Girth

Backfat

Loin Area

ScrotalCircumference

KiddingDifficulty -.50

+.92

+.97 +.87

+.60 +.45 +.51

+.90 +.74 +.89 +.79

+.86 +.87 +.77 +.51 +.67

Page 24: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Use of Heritability andCorrelations

• Selection for Weight makes moderate progress (h2=40-65%)

• Positive Correlation (r2=+.50) between birth, weaning and carcass traits means Selection will result in increases in all three traits.

Page 25: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Use of Heritability andCorrelations

• Selection for Weight makes moderate progress (h2=40-65%)

• Negative Correlation (r2=-.50) between Weight and Kidding Difficulty means Selection will result with increased Kidding Difficulty and birth, weaning and carcass weight.

Page 26: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

• ConsumerConsumer• PackerPacker• FeederFeeder• Commercial producerCommercial producer• Purebred BreederPurebred Breeder

• Each section may have differing Each section may have differing trait criteriatrait criteria

Selection for the IndustrySelection for the Industry

Page 27: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

CONSUMERCONSUMER

• Price/ ValuePrice/ Value

• ConsistencyConsistency

• HolidaysHolidays

• Taste/ FlavorTaste/ Flavor

• Safety/ HealthSafety/ Health

Page 28: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

PACKERPACKER• Dressing PercentDressing Percent

• Quality GradeQuality Grade

• Yield GradeYield Grade

Page 29: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

FEEDERFEEDER• HealthHealth

• GainGain

• Feed EfficiencyFeed Efficiency

Page 30: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Commercial or Purebred Commercial or Purebred ProducerProducer

• ReproductionReproduction

• Maintenance CostMaintenance Cost

• GrowthGrowth– WeaningWeaning

– YearlingYearling

Page 31: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

ECONOMIC ECONOMIC IMPORTANCEIMPORTANCE

TRAITTRAIT

RELATIVERELATIVE

IMPORTANCEIMPORTANCE

REPRODUCTIONREPRODUCTION 22

PRODUCTIONPRODUCTION 11

PRODUCTPRODUCT 11

Page 32: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

HeritabilityHeritability

ReproductionReproductionReproductionReproduction

ProductionProductionProductionProduction

ProductProductProductProduct

LowLowLowLow

ModerateModerateModerateModerate

HighHighHighHigh

(Heritability is a measure of how a trait will (Heritability is a measure of how a trait will respond to selection)respond to selection)

““or how well the offspring resemble their parents phenotype”or how well the offspring resemble their parents phenotype”

Page 33: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

MEASURABLE TRAITMEASURABLE TRAIT (Phenotype) (Phenotype)

• GENETIC EFFECTSGENETIC EFFECTS– ½ GENETICS FROM BUCK½ GENETICS FROM BUCK– ½ GENETICS FROM DOE½ GENETICS FROM DOE

• ENVIRONMENTAL EFFECTSENVIRONMENTAL EFFECTS– WEATHERWEATHER– NUTRITIONNUTRITION– HEALTHHEALTH– Etc.Etc.

Page 34: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Measures of PhenotypeMeasures of Phenotype

P = G + EP = G + E

Birth weightsWeaning weightsYearling weightsCarcass TraitsReproductive traitsAdaptability

Page 35: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Measures of PhenotypeMeasures of Phenotype

P = G + EP = G + ERequires: 1. Identification of animals

2. Equipment to record trait measure3. Record Keeping System4. Computer with Spreadsheet is economical and recommended

Page 36: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Genetic EvaluationsGenetic Evaluations

Phenotypes and PedigreesPhenotypes and Pedigrees

Objective: convert data into genetic Objective: convert data into genetic information for the purpose of selectioninformation for the purpose of selection

Separate genetic portion of phenotype fromSeparate genetic portion of phenotype from environment. environment.

Page 37: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

• 90 DAYS OLD90 DAYS OLD• ON FARM “A”ON FARM “A”• BUCKBUCK• 2 YR DOE2 YR DOE

• 105 DAYS OLD105 DAYS OLD• ON FARM “A”ON FARM “A”• BUCKBUCK• 4 YR DOE4 YR DOE

WHAT ARE THE WHAT ARE THE KNOWNKNOWN ENVIRONMENTAL EFFECTS? ENVIRONMENTAL EFFECTS?

41 lbs38 lbs

Page 38: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

AGEAGE- 15 DAYS15 DAYS + 15 DAYS+ 15 DAYS

AGE OF DOEAGE OF DOE

2 YR OLD2 YR OLD 4 YEAR 4 YEAR OLDOLD

FARMFARM

SAMESAME SAMESAME

Known Environmental EffectsKnown Environmental Effects

680680 650650

Page 39: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Adjusted 90 day wt.Adjusted 90 day wt.formulaformula

(Actual Wt - Birth wt)(Actual Wt - Birth wt)

Age in daysAge in daysXX 90 90 + doe age adj. + birth wt + doe age adj. + birth wt

Breed associations are calculating adjustments as they accumulate data from the breeders

Page 40: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Adjusted 90 day wt.Adjusted 90 day wt.

(41 –8)(41 –8) 90 days90 days X 90 + 5 + 8X 90 + 5 + 8

(42 – 7)(42 – 7)105 days105 days

X 90 + 0 + 7X 90 + 0 + 7

= 45.999 Lbs.= 45.999 Lbs. = 36.999 Lbs= 36.999 Lbs..

Page 41: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Contemporary Group RatiosContemporary Group Ratios

adj. 90 day wtadj. 90 day wt adj. 90 day wtadj. 90 day wt

Herd Avg. = 36Herd Avg. = 36 Herd Avg.= 36Herd Avg.= 36

Ratio = 39/36Ratio = 39/36 Ratio = 37/36Ratio = 37/36

108108 102.8102.8

3939 3737

Useful for Useful for withinwithin herd selections but not between herds herd selections but not between herds

Buck A Buck B

Page 42: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

We We mustmust expect differences between expect differences between animals across different environmentsanimals across different environments

Page 43: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Future Genetic EvaluationsFuture Genetic Evaluations

Source of dataSource of data

AncestorsAncestors

Collateral relativesCollateral relatives

DescendentsDescendents

Own performanceOwn performance

Correlated traitsCorrelated traits

Page 44: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

(EPD)-Expected Progeny(EPD)-Expected ProgenyDifferenceDifference

• A prediction of the genetics a goat will pass on to his kids, when compared to other goats within the breed

• Takes into account the actual measurements, all ancestral measurements and environment

• Not a perfect science, so use as a risk management tool

Page 45: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

College Football BCSCollege Football BCS

Purpose is to identify best college football teamsPurpose is to identify best college football teams

Source of DataSource of Data :

AP rankingAP rankingUSA RankingUSA RankingRecordRecordStrength of scheduleStrength of scheduleetc.etc.

Ranking changes as more games are playedRanking changes as more games are played

Page 46: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

National Goat EvaluationNational Goat EvaluationBreed SpecificBreed Specific

Breed summaries reportBreed summaries report

EPDsEPDs.

Expected Progeny DifferenceExpected Progeny DifferenceAnd Breeding ValuesAnd Breeding Values

The American Boer Goat Association, American Dairy Goat Association, National DHI Program

Page 47: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Interpreting EPDsInterpreting EPDsProvide a prediction of future progeny performance of Provide a prediction of future progeny performance of one individual compared to future progeny of one individual compared to future progeny of another individual within a breed for a specific trait.another individual within a breed for a specific trait.

Allow one to compare or rank the genetic superiorityAllow one to compare or rank the genetic superiorityof individual animals within a breed for a specificof individual animals within a breed for a specificTrait.Trait.

EPDs are reported in the actual unit that the trait is EPDs are reported in the actual unit that the trait is Measured (Lbs. for growth traits).Measured (Lbs. for growth traits).

They can be positive or negative numbersThey can be positive or negative numbers

Page 48: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Effective EPDs: Examples

• Scrotal Circumference (SC)High SC bucks sire does with earlier Puberty• Birth Weight (BW)Low BW bucks have more live kids• Average Daily Gain (ADG)Allows choice for replacements or sale of

weanlings• Carcass Merit (CM)Allows choice for direct or wholesale Marketing

Page 49: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Array of genetic value of an individualArray of genetic value of an individual

(EPD), adjusted trait performance(EPD), adjusted trait performance

AvgAvg.

Page 50: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Difference in Array for two BucksDifference in Array for two BucksFull Brothers have a sample 1/2 genetics of buck & of the doe butFull Brothers have a sample 1/2 genetics of buck & of the doe butNot necessarily the exact same geneticsNot necessarily the exact same genetics

Page 51: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

HOW ABOUTa

BREAK?

Page 52: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

How do you use genetic tools in a selection program ?

Start by using available informationStart by using available information

Evaluate Goat Breed Characteristics thatEvaluate Goat Breed Characteristics thatAppear to fit your marketing planAppear to fit your marketing plan

Page 53: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Average Breeding Values of SixDairy Goat Breeds

Breed Milk Fat Protein

Alpine 0 0.0 0.0

LaMancha -114 -0.7 -1.3

Nubian -531 4.4 -1.9

Oberhasli -476 -15.7 -14.3

Saanen 60 0.8 1.9

Toggenburg -18 -6.4 -.35

Page 54: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Alpine LaMancha Nubian

You would expect 114 and 531 pounds less milkFrom LaMancha and Nubian as compared to Alpine

Page 55: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Oberhasli Saanen Toggenburg

When compared to Alpine, you would expect 60 lbs moreMilk for Saanen, 476 lbs less milk from Oberhasli and 18 lbs less milk from Toggenburg

Page 56: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Infant Meat Goat Industry

• Breed Associations are growing

• Members are sending data through membership

• Information is increasing

• Most selections must come from individual and herd data

Page 57: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Infant Meat Goat Industry

• Majority of information reports data on Spanish (brush), Boer, Kiko, San Clemente, Myotonic (fainting) and crossbreds

• This data provides ranges for comparison

• Emerging breed associations will help supply needed breeding values

Page 58: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

CommonMeatGoatBreeds

KIKO Spanish

BOERSan Clemente

Page 59: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Boer Buck Performance Test(Langston Univ. & Okla. State Univ., 2004)

Total Gain (lbs) 53.1 27.5-68.2

Average Daily Gain (lbs per day)

0.63 0.33-0.81

Feed Efficiency (lbs of feed per lb of gain)

6.8 5.1-9.3

Loin eye area

(square inches)1.95 1.29-2.54

Page 60: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Growth Performance(Langston Univ., 2003)

DM intake (lb/day)

Avg Daily Gain (lb)

Feed Efficiency (adg/dm feed)

Alpine 1.56 0.13 0.339

Angora 1.05 0.13 0.61

Boer 1.53 0.19 0.559

Spanish 1.13 0.08 0.32

Page 61: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Carcass Performance(Texas A&M Univ, 1999)

Feedlot Range Feedlot Range

Live Wt 83.97 45.12 73.74 40.52

Carcass Wt

47.78 22.0 42.33 19.25

Back Fat .047 .012 .028 .012

Type 11.42 3.25 8.33 1.83

Marbling 3.35 1.70 3.06 1.80

Page 62: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Common FibreGoat Breeds

Angora

Cashmere

Page 63: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Mohair Production & ValueYear Goats

Clipped

(1000 hd)

Production

(1000 lbs)

Price per Unit

(US $)

Value of Production

(1000 $)

2003 283 2,174 1.58 3,435

2002 283 2,174 1.58 3,432

2001 402 2,628 4.00 10,609

2000 444 2,896 3.00 10,016

1999 700 5,045 2.00 12,562

1998 931 6,814 2.00 15,341

Page 64: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Putting it Together at this Point

• Develop Marketing Plan

• Use Breed Characteristics

• Evaluate Breeding Values

• Gather herd performance data

• Compare Animal Performance

• Develop Record System

Page 65: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Genetic Selection orGenetic Selection orBreeding PlansBreeding Plans

Interpreting AdjustedInterpreting Adjusted

Performance TraitsPerformance Traits

These tools predict the average value of These tools predict the average value of genetic ability offered by an animal.genetic ability offered by an animal.

Page 66: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Available Breeding Tools

• First: Pedigree Evaluations

• Second: Use of Heterosis

• Third: Trait Calculation & Indexes

Page 67: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

KidKid87 ½ %87 ½ %

Buck 1 (50%)Buck 1 (50%)

Buck 2 (25%)Buck 2 (25%)

Buck 3 (12.5%)Buck 3 (12.5%)Doe 1 by buck 2Doe 1 by buck 2

Doe 2 by buck 3Doe 2 by buck 3

FIRSTFIRST87 ½ % of genetics of kid crop 87 ½ % of genetics of kid crop is a result of last 3 bucks used!!is a result of last 3 bucks used!!

Page 68: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

KIDKID

Buck (1/2 Trait Buck (1/2 Trait Value )Value )

MG Buck (1/4 Trait MG Buck (1/4 Trait Value)Value)

DoeDoe

FIRSTFIRSTCalculating Pedigree Estimate Calculating Pedigree Estimate

EPDsEPDs

Pedigree Est. = ½ Buck Value + ¼ MGB ValuePedigree Est. = ½ Buck Value + ¼ MGB Value

Page 69: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

KIDKID

Toots (birth value=6.4)Toots (birth value=6.4)

Caesar (birth value=8.8)Caesar (birth value=8.8)

DoeDoe

FIRSTFIRSTCalculating Pedigree Estimate Calculating Pedigree Estimate

EPDsEPDs

Pedigree Est. Birth value= ½ (6.4)+ ¼ (8.8)= 5.4Pedigree Est. Birth value= ½ (6.4)+ ¼ (8.8)= 5.4

Page 70: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Optimizing breed complementarityOptimizing breed complementarity

Capitalizing Heterosis (Hybrid Vigor)Capitalizing Heterosis (Hybrid Vigor)

SECONDSECONDBenefits of CrossbreedingBenefits of Crossbreeding

Page 71: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

HETEROSIS (HYBRID VIGORHETEROSIS (HYBRID VIGOR))

Measure of superior performance of a Measure of superior performance of a trait of the ‘Crossbred individual’ overtrait of the ‘Crossbred individual’ overand above the average performanceand above the average performanceof that trait of the two parental breedsof that trait of the two parental breeds.

Page 72: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

% HETEROSIS% HETEROSIS

Crossbred Avg. Crossbred Avg. –– Parental Breeds AvgParental Breeds Avg. X 100. X 100

Parental Breeds AvgParental Breeds Avg.

Page 73: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

HeterosisHeterosis

Breed ABreed A

F1 CrossF1 Cross

Breed BBreed B

ReproductionReproduction

Growth

Carcass

Cross Bred Boer-Spanish

Page 74: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Example of % heterosis:Example of % heterosis:

Breed Breed AA avg. weaning weight = 45 Lbs.avg. weaning weight = 45 Lbs.

Breed Breed BB avg. weaning weight = 51 Lbsavg. weaning weight = 51 Lbs.

AABB crossbred avg. weaning weight = 50crossbred avg. weaning weight = 50

% Heterosis =% Heterosis = 5050–– 4848 X 100 = 4%X 100 = 4%4848

Page 75: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Response to HeterosisResponse to Heterosis

Inversely related to the heritability of the traitInversely related to the heritability of the trait

The The More diverseMore diverse differences of breeds useddifferences of breeds used

The The greatergreater the responsethe response

Page 76: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Types of HeterosisTypes of Heterosis

IndividualIndividual --expressed in the XB kidexpressed in the XB kid

MaternalMaternal --expressed in the doeexpressed in the doe

PaternalPaternal --expressed in the buckexpressed in the buck

Page 77: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Expected % Heterosis Expected % Heterosis

4.24.24.74.7Wean Wt.Wean Wt.

14.814.88.58.5Lbs. kid/doeLbs. kid/doe

1.61.62.72.7Birth wt.Birth wt.

2.02.01.71.7AdaptabilityAdaptability

6.66.63.43.4Kidding %Kidding %

MaternalMaternalIndividualIndividualTraitTrait

Page 78: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

% of Maximum Heterosis% of Maximum Heterosisrealized in different crossbred realized in different crossbred

percentagespercentages

25257/8 : 1/87/8 : 1/8

37.537.53/16 : 13/163/16 : 13/16

505075 : 2575 : 25

62.562.55/16 : 11/165/16 : 11/16

75753/8 : 5/83/8 : 5/8

87.587.59/16 : 7/169/16 : 7/16

10010050 : 25 : 2550 : 25 : 25

10010050: 5050: 50

% Max. Heterosis% Max. HeterosisCrossbred %Crossbred %

Page 79: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

SECONDSECONDCrossbreeding SystemsCrossbreeding Systems

To improve:To improve:

1.1. Lbs. Calf weaned per cow maintainedLbs. Calf weaned per cow maintained2.2. AdaptabilityAdaptability3.3. Live BirthsLive Births3.3. Other Traits of InterestOther Traits of Interest

Page 80: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

11

A B

AB

Basic Two Way CrossBasic Two Way Cross

+ 8.5% Lbs. Kid/Doe+ 8.5% Lbs. Kid/Doe

Only capture Individual Heterosis in the KidOnly capture Individual Heterosis in the Kid

Page 81: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

10

AA BB

3 Breed2 Breed

CC

AA BB

Heterosis increaseslbs. kid per doe

15%

Heterosis increaseslbs. kid per doe

20%

Rotational CrossbreedingRotational Crossbreeding

Page 82: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

11

A B

T

RotationalRotational--Terminal Sire CrossbreedingTerminal Sire Crossbreeding

+23.3 % Lbs. kid/doe+23.3 % Lbs. kid/doe

Page 83: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Heterosis in different Heterosis in different crossbreeding systemscrossbreeding systems

% Heterosis in XB Population% Heterosis in XB Population

SystemSystem DoesDoes KidsKids lbs kidlbs kidwn/doewn/doe

Two breedTwo breed 00 100100 8.58.52 breed crisscross 672 breed crisscross 67 6767 15.615.63 breed rotation3 breed rotation 8686 8686 20.020.03 brd cross terminal 1003 brd cross terminal 100 100100 23.323.3BackcrossBackcross 100100 5050 19.019.0

Page 84: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

% H e t e r o s i s f o r L b s . W e a n /D o e% H e t e r o s i s f o r L b s . W e a n /D o e

0

5

1 0

1 5

2 0

2 5

% H

eter

osis

I n d . H e t . M a t e r . H e t . I n d + M a t e r

I n d + M a te rM a t e r . H e t .I n d . H e t .

M a t e r n a l & I n d iv id u a l H e t e r o s is i s M a t e r n a l & I n d iv id u a l H e t e r o s is i s a d d i t iv ea d d it iv e

Page 85: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

100DifferentBreeds of

GoatsWorldwide

Page 86: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

4,950 4,950 CombinationsCombinations

• Two Breed Crosses with 100 different Two Breed Crosses with 100 different BreedsBreeds

Page 87: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

161,200161,200CombinationsCombinations

•• Three Breed Crosses with 100 Different Three Breed Crosses with 100 Different BreedsBreeds

Page 88: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Use Genetic Tools and Breeding Values or

EPDsWhen Available

Identify bucks that will contribute toImprovement in economically important traits

Page 89: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

PERFORMANCEPERFORMANCE

BENCHMARKSBENCHMARKS

What is the current level

of herd performance?

What direction (if any) should

the herd move?

Page 90: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Single Most Important Trait Single Most Important Trait In The Goat Industry ??In The Goat Industry ??

Page 91: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

REPRODUCTION

Page 92: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

THIRDMeasure of Production/

Reproduction

Lbs kid weaned / doe exposed= % kid crop weaned X avg. wn. Wt.

Prorates total lbs. kid weaned across all does maintainedProrates total lbs. kid weaned across all does maintained

Best measure of productivity

Page 93: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

THIRDTHIRDLbs. Kid Weaned / Lbs. Kid Weaned /

Doe Doe ExposedExposed

% kid crop% kid crop Avg. W.WAvg. W.W. Lbs. / doeLbs. / doe

120120 3939 46.846.8

105 3939 40.940.9

9595 39 39 37.1 37.1

8585 39 39 33.2 33.2

Page 94: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Where Can I Find Where Can I Find Quality Data ?Quality Data ?

Individual herd OwnersIndividual herd Owners

Breed AssociationsBreed Associations

National Dairy ProgramNational Dairy Program

Page 95: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Establish Benchmark of Establish Benchmark of ProductionProduction

Determine which traits need improvementDetermine which traits need improvement

Select for that trait(s)Select for that trait(s)

BW= birth weightBW= birth weightWW= weaning weightWW= weaning weightSC= scrotal circumferenceSC= scrotal circumferenceAdaptabilityAdaptability

Page 96: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Identify How to Use DifferentBucks for Different Purposes

Produce Replacement Does

Terminal Cross Bucks

Kidding Ease Bucks

Carcass Merit Bucks

Page 97: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Remember

Genetic Correlations

(Antagonisms)Milk production, Growth rate (size)

vs. Fertility

vs. Maintenance requirements

Quality vs. Red Meat Yield

Growth rate and Calving ease

Birth weight vs. Yearling weight

Page 98: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Use Trait Qualities

Heritability Heterosis

Reproduction LOW HIGH(fertility)

Production MODERATE MODERATE(growth)

Product HIGH LOW(carcass)

Page 99: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

-1.1 22 18 43 .48-1.1 22 18 43 .48

AA BB

CC DD

Which is the “BEST Buck”?Which is the “BEST Buck”?

Page 100: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

5. 7 47 11 90 .095. 7 47 11 90 .09-1.1 22 18 43 .48-1.1 22 18 43 .48

Breed Avg. 11.5 42 33 150 Breed Avg. 11.5 42 33 150

AA BB

CC DD

Brth Ww SC M Brth Ww SC M

Pick Your BuckPick Your Buck

B=10, W=35, S=39, M=130

B=12, W=42, S=40, M=155

B=11, W=38, S=33, M=160B=15, W=45, S=41, M=170

Page 101: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

GOOD BUCK?

Don’t Buy a “Billy in a Cart” USEA Source of Quality Information

Page 102: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Preliminary Selection onPerformance

Then FOCUS on:

-Structural Soundness

-Temperament

-Scrotal Circumference

-ect

Page 103: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

STRUCTURAL SOUNDNESS

Skeletal design & how well the bonessupport the animal’s body

Related to Longevity

And Adaptability

FEET

LEGS

Page 104: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Correct Structures

Angle of Pastern is usually the same as Angle of Shoulder

Page 105: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Breeding Systems

Develop your Marketing Plan

Choose your breeds: Breeding Values and Characteristics

In a crossbreeding system, balance the characteristics of the breeds used.

Choose Bucks with performance data. Use EPDs when available.

Page 106: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

•Systematic crossbreeding has benefits.

–Heterosis; Complementarity

•Planning is critical.

–Use EPDs when available.

•Crossbreeding is NOT a substitute for poor management.

Crossbreeding Considerations

Page 107: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Action PlanAction PlanSelection Selection Considerations

Use Breeding Values as a selection tool when available.

Target kidding difficulty, growth and doe size genetics to match environment.

Know your market ---Know your market --- what your herd will “produce”

Adopt a “consumer-focused”“consumer-focused” mindset towards carcass merit (avoid misfits).

Characterize strengths and weaknesses.

Page 108: Understanding Genetics For Use In For Use In Goat Production Goat Production Dr. Dennis Onks Director Middle TN Research Center University of Tennessee.

Consumers Consumers will shape will shape our future our future and set the and set the

Pace!Pace!